Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 189083737
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|189083737 peroxisome biogenesis factor 26 [Homo sapiens]
(305 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|189083737 peroxisome biogenesis factor 26 [Homo sapiens] 603 e-173
gi|8923625 peroxisome biogenesis factor 26 [Homo sapiens] 603 e-173
gi|19923790 rab3 GTPase-activating protein, non-catalytic subuni... 31 1.2
gi|94538366 transient receptor potential cation channel, subfami... 31 1.6
gi|47174859 tripartite motif-containing 46 [Homo sapiens] 30 2.0
gi|167830436 DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 2... 30 2.7
gi|167830433 DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 1... 30 2.7
gi|89276769 mitogen-activated protein kinase 4 [Homo sapiens] 30 2.7
gi|13129060 transmembrane protein 38A [Homo sapiens] 30 3.5
gi|4504341 histone acetyltransferase 1 [Homo sapiens] 29 4.5
gi|154091312 transient receptor potential cation channel, subfam... 29 4.5
gi|154091308 transient receptor potential cation channel, subfam... 29 4.5
gi|154091310 transient receptor potential cation channel, subfam... 29 4.5
gi|154091320 transient receptor potential cation channel, subfam... 29 4.5
gi|154091318 transient receptor potential cation channel, subfam... 29 4.5
gi|154091316 transient receptor potential cation channel, subfam... 29 4.5
gi|154091314 transient receptor potential cation channel, subfam... 29 4.5
gi|16418391 zinc finger, imprinted 3 [Homo sapiens] 29 4.5
gi|57242796 jumonji, AT rich interactive domain 1B [Homo sapiens] 29 5.9
gi|50658082 centrosomal protein 70 kDa [Homo sapiens] 29 5.9
gi|55749779 DENN/MADD domain containing 1A isoform 1 [Homo sapiens] 29 5.9
gi|164607124 Fanconi anemia, complementation group I isoform 1 [... 28 7.7
gi|82830440 Fanconi anemia, complementation group I isoform 2 [H... 28 7.7
>gi|189083737 peroxisome biogenesis factor 26 [Homo sapiens]
Length = 305
Score = 603 bits (1554), Expect = e-173
Identities = 305/305 (100%), Positives = 305/305 (100%)
Query: 1 MKSDSSTSAAPLRGLGGPLRSSEPVRAVPARAPAVDLLEEAADLLVVHLDFRAALETCER 60
MKSDSSTSAAPLRGLGGPLRSSEPVRAVPARAPAVDLLEEAADLLVVHLDFRAALETCER
Sbjct: 1 MKSDSSTSAAPLRGLGGPLRSSEPVRAVPARAPAVDLLEEAADLLVVHLDFRAALETCER 60
Query: 61 AWQSLANHAVAEEPAGTSLEVKCSLCVVGIQALAEMDRWQEVLSWVLQYYQVPEKLPPKV 120
AWQSLANHAVAEEPAGTSLEVKCSLCVVGIQALAEMDRWQEVLSWVLQYYQVPEKLPPKV
Sbjct: 61 AWQSLANHAVAEEPAGTSLEVKCSLCVVGIQALAEMDRWQEVLSWVLQYYQVPEKLPPKV 120
Query: 121 LELCILLYSKMQEPGAVLDVVGAWLQDPANQNLPEYGALAEFHVQRVLLPLGCLSEAEEL 180
LELCILLYSKMQEPGAVLDVVGAWLQDPANQNLPEYGALAEFHVQRVLLPLGCLSEAEEL
Sbjct: 121 LELCILLYSKMQEPGAVLDVVGAWLQDPANQNLPEYGALAEFHVQRVLLPLGCLSEAEEL 180
Query: 181 VVGSAAFGEERRLDVLQAIHTARQQQKQEHSGSEEAQKPNLEGSVSHKFLSLPMLVRQLW 240
VVGSAAFGEERRLDVLQAIHTARQQQKQEHSGSEEAQKPNLEGSVSHKFLSLPMLVRQLW
Sbjct: 181 VVGSAAFGEERRLDVLQAIHTARQQQKQEHSGSEEAQKPNLEGSVSHKFLSLPMLVRQLW 240
Query: 241 DSAVSHFFSLPFKKSLLAALILCLLVVRFDPASPSSLHFLYKLAQLFRWIRKAAFSRLYQ 300
DSAVSHFFSLPFKKSLLAALILCLLVVRFDPASPSSLHFLYKLAQLFRWIRKAAFSRLYQ
Sbjct: 241 DSAVSHFFSLPFKKSLLAALILCLLVVRFDPASPSSLHFLYKLAQLFRWIRKAAFSRLYQ 300
Query: 301 LRIRD 305
LRIRD
Sbjct: 301 LRIRD 305
>gi|8923625 peroxisome biogenesis factor 26 [Homo sapiens]
Length = 305
Score = 603 bits (1554), Expect = e-173
Identities = 305/305 (100%), Positives = 305/305 (100%)
Query: 1 MKSDSSTSAAPLRGLGGPLRSSEPVRAVPARAPAVDLLEEAADLLVVHLDFRAALETCER 60
MKSDSSTSAAPLRGLGGPLRSSEPVRAVPARAPAVDLLEEAADLLVVHLDFRAALETCER
Sbjct: 1 MKSDSSTSAAPLRGLGGPLRSSEPVRAVPARAPAVDLLEEAADLLVVHLDFRAALETCER 60
Query: 61 AWQSLANHAVAEEPAGTSLEVKCSLCVVGIQALAEMDRWQEVLSWVLQYYQVPEKLPPKV 120
AWQSLANHAVAEEPAGTSLEVKCSLCVVGIQALAEMDRWQEVLSWVLQYYQVPEKLPPKV
Sbjct: 61 AWQSLANHAVAEEPAGTSLEVKCSLCVVGIQALAEMDRWQEVLSWVLQYYQVPEKLPPKV 120
Query: 121 LELCILLYSKMQEPGAVLDVVGAWLQDPANQNLPEYGALAEFHVQRVLLPLGCLSEAEEL 180
LELCILLYSKMQEPGAVLDVVGAWLQDPANQNLPEYGALAEFHVQRVLLPLGCLSEAEEL
Sbjct: 121 LELCILLYSKMQEPGAVLDVVGAWLQDPANQNLPEYGALAEFHVQRVLLPLGCLSEAEEL 180
Query: 181 VVGSAAFGEERRLDVLQAIHTARQQQKQEHSGSEEAQKPNLEGSVSHKFLSLPMLVRQLW 240
VVGSAAFGEERRLDVLQAIHTARQQQKQEHSGSEEAQKPNLEGSVSHKFLSLPMLVRQLW
Sbjct: 181 VVGSAAFGEERRLDVLQAIHTARQQQKQEHSGSEEAQKPNLEGSVSHKFLSLPMLVRQLW 240
Query: 241 DSAVSHFFSLPFKKSLLAALILCLLVVRFDPASPSSLHFLYKLAQLFRWIRKAAFSRLYQ 300
DSAVSHFFSLPFKKSLLAALILCLLVVRFDPASPSSLHFLYKLAQLFRWIRKAAFSRLYQ
Sbjct: 241 DSAVSHFFSLPFKKSLLAALILCLLVVRFDPASPSSLHFLYKLAQLFRWIRKAAFSRLYQ 300
Query: 301 LRIRD 305
LRIRD
Sbjct: 301 LRIRD 305
>gi|19923790 rab3 GTPase-activating protein, non-catalytic subunit
[Homo sapiens]
Length = 1393
Score = 31.2 bits (69), Expect = 1.2
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 68 HAVAEEPAGTSLEVKCSLCVVGIQALAEMDRWQEVLSWVLQYYQVPEKLPPKVLELCILL 127
H+VA + + E K S V+G + A D W E LS +Y+ KL K LE C++L
Sbjct: 845 HSVAAQISNNMTEKKFSQTVLGADSEALTDSW-EALSLDTEYW----KLLLKQLEDCLIL 899
Query: 128 YSKMQEPG 135
+ + G
Sbjct: 900 QTLLHSKG 907
>gi|94538366 transient receptor potential cation channel, subfamily
M, member 1 [Homo sapiens]
Length = 1603
Score = 30.8 bits (68), Expect = 1.6
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 9/76 (11%)
Query: 93 LAEMDRWQEVLSWVLQYYQVPEKLPPKVLELCILLYSKMQEPGAVLDVVGAWLQDPANQN 152
L MD W + W++ Y V L K+ E+ M EPG + + WLQ+ N
Sbjct: 850 LVRMDGWPSLQEWIVISYIVSLALE-KIREIL------MSEPGKLSQKIKVWLQE--YWN 900
Query: 153 LPEYGALAEFHVQRVL 168
+ + A++ F + +L
Sbjct: 901 ITDLVAISTFMIGAIL 916
>gi|47174859 tripartite motif-containing 46 [Homo sapiens]
Length = 759
Score = 30.4 bits (67), Expect = 2.0
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 176 EAEELVVGSAAFGEERRLDVLQAIHTARQQQKQEHSGSEEAQKPNLEGS 224
E +LV G A EE+R +LQAI +Q++ S + + L+GS
Sbjct: 312 EVSQLVRGLGAVLEEKRASLLQAIEECQQERLARLSAQIQEHRSLLDGS 360
>gi|167830436 DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 2
[Homo sapiens]
Length = 994
Score = 30.0 bits (66), Expect = 2.7
Identities = 34/132 (25%), Positives = 52/132 (39%), Gaps = 24/132 (18%)
Query: 48 HLDFRAALETCERAWQSLANHAVAEEPAGTSLEVKCSLCVVGIQALAEMDRWQEVLSWVL 107
H D + + T W S AN + AG C G++A +L
Sbjct: 562 HFDTQNNISTMSAEWVSKANAKQRKGRAGRVQPGHCYHLYNGLRAS------------LL 609
Query: 108 QYYQVPEKLPPKVLELCILLYSKMQEPGAVLDVVGAWLQDPANQ-------NLPEYGALA 160
YQ+PE L + ELC+ + K+ G + + + P+N+ +L E AL
Sbjct: 610 DDYQLPEILRTPLEELCLQI--KILRLGGIAYFLSRLMDPPSNEAVLLSIRHLMELNALD 667
Query: 161 EFHVQRVLLPLG 172
+ Q L PLG
Sbjct: 668 K---QEELTPLG 676
>gi|167830433 DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 1
[Homo sapiens]
Length = 1008
Score = 30.0 bits (66), Expect = 2.7
Identities = 34/132 (25%), Positives = 52/132 (39%), Gaps = 24/132 (18%)
Query: 48 HLDFRAALETCERAWQSLANHAVAEEPAGTSLEVKCSLCVVGIQALAEMDRWQEVLSWVL 107
H D + + T W S AN + AG C G++A +L
Sbjct: 576 HFDTQNNISTMSAEWVSKANAKQRKGRAGRVQPGHCYHLYNGLRAS------------LL 623
Query: 108 QYYQVPEKLPPKVLELCILLYSKMQEPGAVLDVVGAWLQDPANQ-------NLPEYGALA 160
YQ+PE L + ELC+ + K+ G + + + P+N+ +L E AL
Sbjct: 624 DDYQLPEILRTPLEELCLQI--KILRLGGIAYFLSRLMDPPSNEAVLLSIRHLMELNALD 681
Query: 161 EFHVQRVLLPLG 172
+ Q L PLG
Sbjct: 682 K---QEELTPLG 690
>gi|89276769 mitogen-activated protein kinase 4 [Homo sapiens]
Length = 587
Score = 30.0 bits (66), Expect = 2.7
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 183 GSAAFGEERRLDVLQAIHTARQQ-QKQEHSGSEEAQKPNLEGSVSHKFLSLPMLVRQLWD 241
GSA E+ ++D + H++ ++ +Q HS E A + + S +K S L + LW
Sbjct: 385 GSAPLAEDVQVDPRKDSHSSSERFLEQSHSSMERAFEADYGRSCDYKVGSPSYLDKLLWR 444
Query: 242 SAVSHFFSLP 251
H +S P
Sbjct: 445 DNKPHHYSEP 454
>gi|13129060 transmembrane protein 38A [Homo sapiens]
Length = 299
Score = 29.6 bits (65), Expect = 3.5
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 221 LEGSVSHKFLSLPMLVRQLWDSAVSHFF--SLPFKKSLLAALILCLLVVRFDPASPSSLH 278
++GS + L+R +W + S P K SL A++ L R+ P S +SL
Sbjct: 154 VKGSGVALMSNFEQLLRGVWKPETNEILHMSFPTKASLYGAILFTLQQTRWLPVSKASLI 213
Query: 279 FLYKL 283
F++ L
Sbjct: 214 FIFTL 218
>gi|4504341 histone acetyltransferase 1 [Homo sapiens]
Length = 419
Score = 29.3 bits (64), Expect = 4.5
Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 12/111 (10%)
Query: 106 VLQYYQVPEKLPPKVLELCILLYSKMQEPGA-VLDVVGAW-------LQDPANQNLPEYG 157
V YY P+K P+V ++ IL + Q GA +L+ V + L A Y
Sbjct: 224 VYNYYVYPDKTRPRVSQMLILTPFQGQGHGAQLLETVHRYYTEFPTVLDITAEDPSKSYV 283
Query: 158 ALAEFHVQRVLLPLGCLSEAEELVVGSAAFGEERRLDVLQAIHTARQQQKQ 208
L +F + ++ L C S E+L+ G F E+ ++ Q +Q ++
Sbjct: 284 KLRDFVLVKLCQDLPCFSR-EKLMQG---FNEDMAIEAQQKFKINKQHARR 330
>gi|154091312 transient receptor potential cation channel, subfamily
M, member 3 isoform b [Homo sapiens]
Length = 1566
Score = 29.3 bits (64), Expect = 4.5
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 9/76 (11%)
Query: 93 LAEMDRWQEVLSWVLQYYQVPEKLPPKVLELCILLYSKMQEPGAVLDVVGAWLQDPANQN 152
L +M+RW W++ Y + K+ E+ M EPG +L V WLQ+ N
Sbjct: 751 LVKMERWPSTQEWIVISYIFTLGIE-KMREIL------MSEPGKLLQKVKVWLQE--YWN 801
Query: 153 LPEYGALAEFHVQRVL 168
+ + A+ F V +L
Sbjct: 802 VTDLIAILLFSVGMIL 817
>gi|154091308 transient receptor potential cation channel, subfamily
M, member 3 isoform f [Homo sapiens]
Length = 1579
Score = 29.3 bits (64), Expect = 4.5
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 9/76 (11%)
Query: 93 LAEMDRWQEVLSWVLQYYQVPEKLPPKVLELCILLYSKMQEPGAVLDVVGAWLQDPANQN 152
L +M+RW W++ Y + K+ E+ M EPG +L V WLQ+ N
Sbjct: 764 LVKMERWPSTQEWIVISYIFTLGIE-KMREIL------MSEPGKLLQKVKVWLQE--YWN 814
Query: 153 LPEYGALAEFHVQRVL 168
+ + A+ F V +L
Sbjct: 815 VTDLIAILLFSVGMIL 830
>gi|154091310 transient receptor potential cation channel, subfamily
M, member 3 isoform g [Homo sapiens]
Length = 1569
Score = 29.3 bits (64), Expect = 4.5
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 9/76 (11%)
Query: 93 LAEMDRWQEVLSWVLQYYQVPEKLPPKVLELCILLYSKMQEPGAVLDVVGAWLQDPANQN 152
L +M+RW W++ Y + K+ E+ M EPG +L V WLQ+ N
Sbjct: 754 LVKMERWPSTQEWIVISYIFTLGIE-KMREIL------MSEPGKLLQKVKVWLQE--YWN 804
Query: 153 LPEYGALAEFHVQRVL 168
+ + A+ F V +L
Sbjct: 805 VTDLIAILLFSVGMIL 820
>gi|154091320 transient receptor potential cation channel, subfamily
M, member 3 isoform a [Homo sapiens]
Length = 1554
Score = 29.3 bits (64), Expect = 4.5
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 9/76 (11%)
Query: 93 LAEMDRWQEVLSWVLQYYQVPEKLPPKVLELCILLYSKMQEPGAVLDVVGAWLQDPANQN 152
L +M+RW W++ Y + K+ E+ M EPG +L V WLQ+ N
Sbjct: 739 LVKMERWPSTQEWIVISYIFTLGIE-KMREIL------MSEPGKLLQKVKVWLQE--YWN 789
Query: 153 LPEYGALAEFHVQRVL 168
+ + A+ F V +L
Sbjct: 790 VTDLIAILLFSVGMIL 805
>gi|154091318 transient receptor potential cation channel, subfamily
M, member 3 isoform d [Homo sapiens]
Length = 1544
Score = 29.3 bits (64), Expect = 4.5
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 9/76 (11%)
Query: 93 LAEMDRWQEVLSWVLQYYQVPEKLPPKVLELCILLYSKMQEPGAVLDVVGAWLQDPANQN 152
L +M+RW W++ Y + K+ E+ M EPG +L V WLQ+ N
Sbjct: 729 LVKMERWPSTQEWIVISYIFTLGIE-KMREIL------MSEPGKLLQKVKVWLQE--YWN 779
Query: 153 LPEYGALAEFHVQRVL 168
+ + A+ F V +L
Sbjct: 780 VTDLIAILLFSVGMIL 795
>gi|154091316 transient receptor potential cation channel, subfamily
M, member 3 isoform e [Homo sapiens]
Length = 1556
Score = 29.3 bits (64), Expect = 4.5
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 9/76 (11%)
Query: 93 LAEMDRWQEVLSWVLQYYQVPEKLPPKVLELCILLYSKMQEPGAVLDVVGAWLQDPANQN 152
L +M+RW W++ Y + K+ E+ M EPG +L V WLQ+ N
Sbjct: 741 LVKMERWPSTQEWIVISYIFTLGIE-KMREIL------MSEPGKLLQKVKVWLQE--YWN 791
Query: 153 LPEYGALAEFHVQRVL 168
+ + A+ F V +L
Sbjct: 792 VTDLIAILLFSVGMIL 807
>gi|154091314 transient receptor potential cation channel, subfamily
M, member 3 isoform k [Homo sapiens]
Length = 1707
Score = 29.3 bits (64), Expect = 4.5
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 9/76 (11%)
Query: 93 LAEMDRWQEVLSWVLQYYQVPEKLPPKVLELCILLYSKMQEPGAVLDVVGAWLQDPANQN 152
L +M+RW W++ Y + K+ E+ M EPG +L V WLQ+ N
Sbjct: 892 LVKMERWPSTQEWIVISYIFTLGIE-KMREIL------MSEPGKLLQKVKVWLQE--YWN 942
Query: 153 LPEYGALAEFHVQRVL 168
+ + A+ F V +L
Sbjct: 943 VTDLIAILLFSVGMIL 958
>gi|16418391 zinc finger, imprinted 3 [Homo sapiens]
Length = 472
Score = 29.3 bits (64), Expect = 4.5
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 186 AFGEERRLDVLQAIHTARQQQKQEHSGSEEAQKPNL 221
AFGE+ +LD Q H + K E+ G+ QK NL
Sbjct: 203 AFGEKWKLDKHQKTHAEERPYKCENCGNAYKQKSNL 238
>gi|57242796 jumonji, AT rich interactive domain 1B [Homo sapiens]
Length = 1544
Score = 28.9 bits (63), Expect = 5.9
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 31 RAPAVDLLEEAADL---LVVHLDFRAALETCE---RAWQSLA-NHAVAEEPAGTSLEVKC 83
R P +D L E + VHL+ LET +AW+ A N + E + LEV C
Sbjct: 1032 RVPVLDTLIELVTRGRSIPVHLNSLPRLETLVAEVQAWKECAVNTFLTENSPYSLLEVLC 1091
Query: 84 SLCVVGIQALAEMDR 98
C +G+ L R
Sbjct: 1092 PRCDIGLLGLKRKQR 1106
>gi|50658082 centrosomal protein 70 kDa [Homo sapiens]
Length = 597
Score = 28.9 bits (63), Expect = 5.9
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 196 LQAIHTARQQQKQEHSGSEEAQKPNLEGSVSHKFLSLPMLVRQLWDS 242
++ IHT RQ ++ E EE NL+ S ++K L L L QL +S
Sbjct: 224 IRKIHTQRQYKEDESQSEEENDYRNLDASPTYKGL-LMSLQNQLKES 269
>gi|55749779 DENN/MADD domain containing 1A isoform 1 [Homo sapiens]
Length = 1009
Score = 28.9 bits (63), Expect = 5.9
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Query: 20 RSSEPVRAVPARAPAVDLLEEAADLLVVHLDFRAALETCERA 61
+S+ PV A P RA ++DLLE+ + +LD AAL+ +A
Sbjct: 553 KSTGPVPAPPDRAASIDLLED----VFSNLDMEAALQPLGQA 590
>gi|164607124 Fanconi anemia, complementation group I isoform 1
[Homo sapiens]
Length = 1328
Score = 28.5 bits (62), Expect = 7.7
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 100 QEVLSWVLQYYQV-PEKLPPKVLELCILLYS---KMQEP 134
Q +LS + Q+Y+ P+ LPP LE CIL +QEP
Sbjct: 625 QTLLSQLKQFYEPKPDLLPPLKLEACILTQGDKISLQEP 663
>gi|82830440 Fanconi anemia, complementation group I isoform 2 [Homo
sapiens]
Length = 1268
Score = 28.5 bits (62), Expect = 7.7
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 100 QEVLSWVLQYYQV-PEKLPPKVLELCILLYS---KMQEP 134
Q +LS + Q+Y+ P+ LPP LE CIL +QEP
Sbjct: 625 QTLLSQLKQFYEPKPDLLPPLKLEACILTQGDKISLQEP 663
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.134 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,874,316
Number of Sequences: 37866
Number of extensions: 521993
Number of successful extensions: 1685
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1673
Number of HSP's gapped (non-prelim): 23
length of query: 305
length of database: 18,247,518
effective HSP length: 102
effective length of query: 203
effective length of database: 14,385,186
effective search space: 2920192758
effective search space used: 2920192758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.