Guide to the Human Genome
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Name: OAT Sequence: fasta or formatted (439aa) NCBI GI: 4557809
Description:

ornithine aminotransferase precursor

Referenced in:

Amino Acid Catabolism
Urea Cycle, Nitric Oxide, and Polyamines

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         37           2
 C cysteine            1.4          6           1
 D aspartate           5.5         24           3
 E glutamate           6.2         27           3
 F phenylalanine       3.6         16           1
 G glycine             8.2         36           2
 H histidine           2.3         10           1
 I isoleucine          6.2         27           2
 K lysine              6.4         28           2
 L leucine            10.5         46           2
 M methionine          1.6          7           1
 N asparagine          4.1         18           2
 P proline             5.2         23           2
 Q glutamine           2.1          9           1
 R arginine            4.8         21           1
 S serine              5.2         23           3
 T threonine           5.0         22           1
 V valine              8.0         35           3
 W tryptophan          1.4          6           1
 Y tyrosine            4.1         18           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ornithine aminotransferase precursor 
AGXT2L2               0.121   alanine-glyoxylate aminotransferase 2-like 2 
AGXT2L1               0.118   alanine-glyoxylate aminotransferase 2-like 1 isoform...
AGXT2L1               0.103   alanine-glyoxylate aminotransferase 2-like 1 isofor...
AGXT2L1               0.099   alanine-glyoxylate aminotransferase 2-like 1 isofor...
AGXT2                 0.093   alanine-glyoxylate aminotransferase 2 precursor [Hom...
ABAT                  0.051   4-aminobutyrate aminotransferase precursor 
ABAT                  0.051   4-aminobutyrate aminotransferase precursor 
ABAT                  0.051   4-aminobutyrate aminotransferase precursor 
ACSS3                 0.009   acyl-CoA synthetase short-chain family member 3 [Hom...
TMEM146               0.005   transmembrane protein 146 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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