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Search of human proteins with 187608508
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|187608508 centromere protein L isoform 1 [Homo sapiens]
(390 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|187608508 centromere protein L isoform 1 [Homo sapiens] 796 0.0
gi|58743363 centromere protein L isoform 2 [Homo sapiens] 681 0.0
gi|148839316 NIMA-related kinase 4 [Homo sapiens] 55 8e-08
gi|231571356 nitric oxide synthase 3 isoform 4 [Homo sapiens] 52 9e-07
gi|148236061 hypothetical protein LOC285501 [Homo sapiens] 50 3e-06
gi|239744440 PREDICTED: hypothetical protein XP_002343124 [Homo ... 48 1e-05
gi|78000165 sorbin and SH3 domain containing 1 isoform 4 [Homo s... 48 1e-05
gi|118442834 RPGRIP1-like isoform a [Homo sapiens] 46 5e-05
gi|239755619 PREDICTED: hypothetical protein [Homo sapiens] 45 9e-05
gi|239750132 PREDICTED: hypothetical protein XP_002347267 [Homo ... 45 9e-05
gi|239735607 nucleoredoxin-like 2 isoform 2 [Homo sapiens] 44 2e-04
gi|226342962 synaptotagmin XIV isoform 2 [Homo sapiens] 44 2e-04
gi|226342955 synaptotagmin XIV isoform 1 [Homo sapiens] 44 2e-04
gi|111118986 alpha-1A-adrenergic receptor isoform 2 [Homo sapiens] 43 4e-04
gi|58331120 hypothetical protein LOC29058 isoform 1 [Homo sapiens] 42 0.001
gi|34147403 intraflagellar transport 81-like isoform 2 [Homo sap... 42 0.001
gi|28372523 intraflagellar transport protein IFT20 [Homo sapiens] 41 0.002
gi|6005810 mitogen-activated protein kinase kinase kinase kinase... 41 0.002
gi|122939204 parkin co-regulated gene protein isoform 1 [Homo sa... 41 0.002
gi|237858664 hypothetical protein LOC123207 isoform b [Homo sapi... 40 0.003
gi|34147532 myosin, light chain 10, regulatory [Homo sapiens] 39 0.010
gi|24497440 interleukin 12 receptor, beta 1 isoform 2 precursor ... 39 0.010
gi|170932471 hypothetical protein LOC79703 [Homo sapiens] 39 0.010
gi|156231351 Niemann-Pick C1-like protein 1 isoform 1 [Homo sapi... 37 0.023
gi|58533176 zinc finger, matrin type 1 isoform 1 [Homo sapiens] 36 0.068
gi|239757631 PREDICTED: hypothetical protein XP_002345506 [Homo ... 35 0.089
gi|239752121 PREDICTED: hypothetical protein XP_002348120 [Homo ... 35 0.089
gi|239746631 PREDICTED: hypothetical protein XP_002344231 [Homo ... 35 0.089
gi|222446642 solute carrier family 36, member 3 isoform 1 [Homo ... 35 0.12
gi|66348062 fumarylacetoacetate hydrolase domain containing 1 is... 35 0.15
>gi|187608508 centromere protein L isoform 1 [Homo sapiens]
Length = 390
Score = 796 bits (2057), Expect = 0.0
Identities = 390/390 (100%), Positives = 390/390 (100%)
Query: 1 MDSYSAPESTPSASSRPEDYFIGATPLQKRLESVRKQSSFILTPPRRKIPQCSQLQEDVD 60
MDSYSAPESTPSASSRPEDYFIGATPLQKRLESVRKQSSFILTPPRRKIPQCSQLQEDVD
Sbjct: 1 MDSYSAPESTPSASSRPEDYFIGATPLQKRLESVRKQSSFILTPPRRKIPQCSQLQEDVD 60
Query: 61 PQKVAFLLHKQWTLYSLTPLYKFSYSNLKEYSRLLNAFIVAEKQKGLAVEVGEDFNIKVI 120
PQKVAFLLHKQWTLYSLTPLYKFSYSNLKEYSRLLNAFIVAEKQKGLAVEVGEDFNIKVI
Sbjct: 61 PQKVAFLLHKQWTLYSLTPLYKFSYSNLKEYSRLLNAFIVAEKQKGLAVEVGEDFNIKVI 120
Query: 121 FSTLLGMKGTQRDPEAFLVQGLILSPRLEYSGTILVDCNLCLLGSSDPSTLAFQVAGTAG 180
FSTLLGMKGTQRDPEAFLVQGLILSPRLEYSGTILVDCNLCLLGSSDPSTLAFQVAGTAG
Sbjct: 121 FSTLLGMKGTQRDPEAFLVQGLILSPRLEYSGTILVDCNLCLLGSSDPSTLAFQVAGTAG 180
Query: 181 ACHHTRIVSKSQLPSENREGKVLWTGWFCCVFGDSLLETVSEDFTCLPLFLANGAESNTA 240
ACHHTRIVSKSQLPSENREGKVLWTGWFCCVFGDSLLETVSEDFTCLPLFLANGAESNTA
Sbjct: 181 ACHHTRIVSKSQLPSENREGKVLWTGWFCCVFGDSLLETVSEDFTCLPLFLANGAESNTA 240
Query: 241 IIGTWFQKTFDCYFSPLAINAFNLSWMAAMWTACKMDHYVATTEFLWSVPCSPQSLDISF 300
IIGTWFQKTFDCYFSPLAINAFNLSWMAAMWTACKMDHYVATTEFLWSVPCSPQSLDISF
Sbjct: 241 IIGTWFQKTFDCYFSPLAINAFNLSWMAAMWTACKMDHYVATTEFLWSVPCSPQSLDISF 300
Query: 301 AIHPEDAKALWDSVHKTPGEVTQEEVDLFMDCLYSHFHRHFKIHLSATRLVRVSTSVASA 360
AIHPEDAKALWDSVHKTPGEVTQEEVDLFMDCLYSHFHRHFKIHLSATRLVRVSTSVASA
Sbjct: 301 AIHPEDAKALWDSVHKTPGEVTQEEVDLFMDCLYSHFHRHFKIHLSATRLVRVSTSVASA 360
Query: 361 HTDGKIKILCHKYLIGVLAYLTELAIFQIE 390
HTDGKIKILCHKYLIGVLAYLTELAIFQIE
Sbjct: 361 HTDGKIKILCHKYLIGVLAYLTELAIFQIE 390
>gi|58743363 centromere protein L isoform 2 [Homo sapiens]
Length = 344
Score = 681 bits (1758), Expect = 0.0
Identities = 344/390 (88%), Positives = 344/390 (88%), Gaps = 46/390 (11%)
Query: 1 MDSYSAPESTPSASSRPEDYFIGATPLQKRLESVRKQSSFILTPPRRKIPQCSQLQEDVD 60
MDSYSAPESTPSASSRPEDYFIGATPLQKRLESVRKQSSFILTPPRRKIPQCSQLQEDVD
Sbjct: 1 MDSYSAPESTPSASSRPEDYFIGATPLQKRLESVRKQSSFILTPPRRKIPQCSQLQEDVD 60
Query: 61 PQKVAFLLHKQWTLYSLTPLYKFSYSNLKEYSRLLNAFIVAEKQKGLAVEVGEDFNIKVI 120
PQKVAFLLHKQWTLYSLTPLYKFSYSNLKEYSRLLNAFIVAEKQKGLAVEVGEDFNIKVI
Sbjct: 61 PQKVAFLLHKQWTLYSLTPLYKFSYSNLKEYSRLLNAFIVAEKQKGLAVEVGEDFNIKVI 120
Query: 121 FSTLLGMKGTQRDPEAFLVQGLILSPRLEYSGTILVDCNLCLLGSSDPSTLAFQVAGTAG 180
FSTLLGMKGTQRDPEAFLVQ
Sbjct: 121 FSTLLGMKGTQRDPEAFLVQ---------------------------------------- 140
Query: 181 ACHHTRIVSKSQLPSENREGKVLWTGWFCCVFGDSLLETVSEDFTCLPLFLANGAESNTA 240
IVSKSQLPSENREGKVLWTGWFCCVFGDSLLETVSEDFTCLPLFLANGAESNTA
Sbjct: 141 ------IVSKSQLPSENREGKVLWTGWFCCVFGDSLLETVSEDFTCLPLFLANGAESNTA 194
Query: 241 IIGTWFQKTFDCYFSPLAINAFNLSWMAAMWTACKMDHYVATTEFLWSVPCSPQSLDISF 300
IIGTWFQKTFDCYFSPLAINAFNLSWMAAMWTACKMDHYVATTEFLWSVPCSPQSLDISF
Sbjct: 195 IIGTWFQKTFDCYFSPLAINAFNLSWMAAMWTACKMDHYVATTEFLWSVPCSPQSLDISF 254
Query: 301 AIHPEDAKALWDSVHKTPGEVTQEEVDLFMDCLYSHFHRHFKIHLSATRLVRVSTSVASA 360
AIHPEDAKALWDSVHKTPGEVTQEEVDLFMDCLYSHFHRHFKIHLSATRLVRVSTSVASA
Sbjct: 255 AIHPEDAKALWDSVHKTPGEVTQEEVDLFMDCLYSHFHRHFKIHLSATRLVRVSTSVASA 314
Query: 361 HTDGKIKILCHKYLIGVLAYLTELAIFQIE 390
HTDGKIKILCHKYLIGVLAYLTELAIFQIE
Sbjct: 315 HTDGKIKILCHKYLIGVLAYLTELAIFQIE 344
>gi|148839316 NIMA-related kinase 4 [Homo sapiens]
Length = 841
Score = 55.5 bits (132), Expect = 8e-08
Identities = 28/47 (59%), Positives = 31/47 (65%)
Query: 140 QGLILSPRLEYSGTILVDCNLCLLGSSDPSTLAFQVAGTAGACHHTR 186
Q L LSP+LE SGTIL NL LLGSSD A +VAG G CHH +
Sbjct: 456 QSLALSPKLECSGTILAHSNLRLLGSSDSPASASRVAGITGVCHHAQ 502
>gi|231571356 nitric oxide synthase 3 isoform 4 [Homo sapiens]
Length = 629
Score = 52.0 bits (123), Expect = 9e-07
Identities = 26/44 (59%), Positives = 29/44 (65%)
Query: 140 QGLILSPRLEYSGTILVDCNLCLLGSSDPSTLAFQVAGTAGACH 183
+GL L PRLE S TI C+L LL SS+P T QV GT GACH
Sbjct: 584 EGLTLWPRLECSSTITAHCSLNLLDSSNPPTSTSQVVGTTGACH 627
>gi|148236061 hypothetical protein LOC285501 [Homo sapiens]
Length = 109
Score = 50.1 bits (118), Expect = 3e-06
Identities = 27/48 (56%), Positives = 28/48 (58%), Gaps = 10/48 (20%)
Query: 147 RLEYSGTILVDCNLCLLGSSDPSTLAFQVAGTAGA----------CHH 184
+LE SG IL CNLCLLGS PST A QVAGT G CHH
Sbjct: 21 KLECSGPILAHCNLCLLGSRHPSTSASQVAGTTGEKTMRSARMMDCHH 68
>gi|239744440 PREDICTED: hypothetical protein XP_002343124 [Homo
sapiens]
Length = 261
Score = 48.1 bits (113), Expect = 1e-05
Identities = 25/38 (65%), Positives = 27/38 (71%)
Query: 140 QGLILSPRLEYSGTILVDCNLCLLGSSDPSTLAFQVAG 177
+GL L PRLE+SGTI CNL LLGSSD A QVAG
Sbjct: 6 EGLALYPRLEFSGTISARCNLRLLGSSDSPASASQVAG 43
>gi|78000165 sorbin and SH3 domain containing 1 isoform 4 [Homo
sapiens]
Length = 1151
Score = 48.1 bits (113), Expect = 1e-05
Identities = 23/37 (62%), Positives = 29/37 (78%)
Query: 143 ILSPRLEYSGTILVDCNLCLLGSSDPSTLAFQVAGTA 179
++SPRLE SGT++ C+L LL SS+P T A QVAGTA
Sbjct: 439 VMSPRLECSGTVIAHCSLKLLDSSNPPTSASQVAGTA 475
>gi|118442834 RPGRIP1-like isoform a [Homo sapiens]
Length = 1315
Score = 46.2 bits (108), Expect = 5e-05
Identities = 26/54 (48%), Positives = 29/54 (53%)
Query: 140 QGLILSPRLEYSGTILVDCNLCLLGSSDPSTLAFQVAGTAGACHHTRIVSKSQL 193
Q L LSP L S I CN L GSSD A QV G GACHHT+ K ++
Sbjct: 1098 QSLALSPGLGCSSAISAHCNFRLPGSSDFPASASQVDGITGACHHTQPSEKIRI 1151
>gi|239755619 PREDICTED: hypothetical protein [Homo sapiens]
Length = 261
Score = 45.4 bits (106), Expect = 9e-05
Identities = 24/38 (63%), Positives = 26/38 (68%)
Query: 140 QGLILSPRLEYSGTILVDCNLCLLGSSDPSTLAFQVAG 177
+GL PRLE+SGTI CNL LLGSSD A QVAG
Sbjct: 6 EGLAPYPRLEFSGTISARCNLRLLGSSDSPASASQVAG 43
>gi|239750132 PREDICTED: hypothetical protein XP_002347267 [Homo
sapiens]
Length = 261
Score = 45.4 bits (106), Expect = 9e-05
Identities = 24/38 (63%), Positives = 26/38 (68%)
Query: 140 QGLILSPRLEYSGTILVDCNLCLLGSSDPSTLAFQVAG 177
+GL PRLE+SGTI CNL LLGSSD A QVAG
Sbjct: 6 EGLAPYPRLEFSGTISARCNLRLLGSSDSPASASQVAG 43
>gi|239735607 nucleoredoxin-like 2 isoform 2 [Homo sapiens]
Length = 135
Score = 44.3 bits (103), Expect = 2e-04
Identities = 22/33 (66%), Positives = 23/33 (69%)
Query: 140 QGLILSPRLEYSGTILVDCNLCLLGSSDPSTLA 172
+ L L PRLE SG IL CNLCLLGSSD LA
Sbjct: 102 RSLALLPRLECSGVILAHCNLCLLGSSDSLALA 134
>gi|226342962 synaptotagmin XIV isoform 2 [Homo sapiens]
Length = 600
Score = 44.3 bits (103), Expect = 2e-04
Identities = 22/32 (68%), Positives = 23/32 (71%)
Query: 147 RLEYSGTILVDCNLCLLGSSDPSTLAFQVAGT 178
RLEYSGTIL CN LLGS+D S A QV GT
Sbjct: 33 RLEYSGTILAHCNFRLLGSNDSSASASQVTGT 64
>gi|226342955 synaptotagmin XIV isoform 1 [Homo sapiens]
Length = 619
Score = 44.3 bits (103), Expect = 2e-04
Identities = 22/32 (68%), Positives = 23/32 (71%)
Query: 147 RLEYSGTILVDCNLCLLGSSDPSTLAFQVAGT 178
RLEYSGTIL CN LLGS+D S A QV GT
Sbjct: 33 RLEYSGTILAHCNFRLLGSNDSSASASQVTGT 64
>gi|111118986 alpha-1A-adrenergic receptor isoform 2 [Homo sapiens]
Length = 475
Score = 43.1 bits (100), Expect = 4e-04
Identities = 22/37 (59%), Positives = 22/37 (59%)
Query: 147 RLEYSGTILVDCNLCLLGSSDPSTLAFQVAGTAGACH 183
RLE SG IL CNL L GS D A Q AGT G CH
Sbjct: 431 RLECSGMILAHCNLRLPGSRDSPASASQAAGTTGMCH 467
>gi|58331120 hypothetical protein LOC29058 isoform 1 [Homo sapiens]
Length = 183
Score = 42.0 bits (97), Expect = 0.001
Identities = 28/72 (38%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 134 PEAFLVQGLILSPRLEYSGTILVDCNLCLLGSSDPSTLAFQVAGTAGACHHTRIVSKSQL 193
P A L L+LSPRLE SG I CNL LL SSD S A + C + S++ L
Sbjct: 18 PGAALRWSLVLSPRLEPSGVISAHCNLHLLASSDSS------ASASRLCQRVMMPSRTNL 71
Query: 194 PSENREGKVLWT 205
+ KV ++
Sbjct: 72 ATGIPSSKVKYS 83
>gi|34147403 intraflagellar transport 81-like isoform 2 [Homo
sapiens]
Length = 431
Score = 41.6 bits (96), Expect = 0.001
Identities = 24/46 (52%), Positives = 28/46 (60%), Gaps = 7/46 (15%)
Query: 127 MKGTQRDPEAFLVQGLILSPRLEYSGTILVDCNLCLLGSSDPSTLA 172
+KG +R Q L LSPRLE G I+ C+L LLGSSDP T A
Sbjct: 392 LKGDER-------QDLTLSPRLECGGVIMAYCSLKLLGSSDPPTSA 430
>gi|28372523 intraflagellar transport protein IFT20 [Homo sapiens]
Length = 148
Score = 41.2 bits (95), Expect = 0.002
Identities = 21/49 (42%), Positives = 28/49 (57%)
Query: 132 RDPEAFLVQGLILSPRLEYSGTILVDCNLCLLGSSDPSTLAFQVAGTAG 180
++ E ++ L +SPRLE +G I C LCL SSD T +V GT G
Sbjct: 63 KEAENEKMKSLAVSPRLECTGAISAHCKLCLSDSSDSPTSPSRVGGTTG 111
>gi|6005810 mitogen-activated protein kinase kinase kinase kinase 1
isoform 2 [Homo sapiens]
Length = 833
Score = 40.8 bits (94), Expect = 0.002
Identities = 26/49 (53%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 132 RDPEAFLVQGLILSPRLEYSGTILVDCNLCLLGSSDPSTLAFQVAGTAG 180
RDP L L+ SPRLE SGTI CNL L GSS+ A +VAG G
Sbjct: 786 RDPT--LTFRLLGSPRLECSGTISPHCNLLLPGSSNSPASASRVAGITG 832
>gi|122939204 parkin co-regulated gene protein isoform 1 [Homo
sapiens]
Length = 296
Score = 40.8 bits (94), Expect = 0.002
Identities = 21/31 (67%), Positives = 22/31 (70%)
Query: 146 PRLEYSGTILVDCNLCLLGSSDPSTLAFQVA 176
PRLE SG I+ CNL LGSSDP T A QVA
Sbjct: 210 PRLECSGAIMARCNLDHLGSSDPPTSASQVA 240
>gi|237858664 hypothetical protein LOC123207 isoform b [Homo
sapiens]
Length = 167
Score = 40.4 bits (93), Expect = 0.003
Identities = 20/30 (66%), Positives = 22/30 (73%)
Query: 137 FLVQGLILSPRLEYSGTILVDCNLCLLGSS 166
FL Q L LSP+LE SG +L CNL LLGSS
Sbjct: 131 FLRQNLALSPKLECSGVVLAHCNLHLLGSS 160
>gi|34147532 myosin, light chain 10, regulatory [Homo sapiens]
Length = 226
Score = 38.5 bits (88), Expect = 0.010
Identities = 19/35 (54%), Positives = 22/35 (62%)
Query: 140 QGLILSPRLEYSGTILVDCNLCLLGSSDPSTLAFQ 174
+ L LSPRLE +G I CNLCL GSS+ A Q
Sbjct: 57 ESLALSPRLERNGMISAHCNLCLTGSSNSPASASQ 91
>gi|24497440 interleukin 12 receptor, beta 1 isoform 2 precursor
[Homo sapiens]
Length = 381
Score = 38.5 bits (88), Expect = 0.010
Identities = 18/37 (48%), Positives = 21/37 (56%)
Query: 152 GTILVDCNLCLLGSSDPSTLAFQVAGTAGACHHTRIV 188
G I CNL L S D A +VAG G CHHTR++
Sbjct: 342 GMISAHCNLRLPDSRDSPASASRVAGITGICHHTRLI 378
>gi|170932471 hypothetical protein LOC79703 [Homo sapiens]
Length = 677
Score = 38.5 bits (88), Expect = 0.010
Identities = 21/47 (44%), Positives = 25/47 (53%)
Query: 142 LILSPRLEYSGTILVDCNLCLLGSSDPSTLAFQVAGTAGACHHTRIV 188
L L PR E SG + CNL L GSSD +VAG A HH ++
Sbjct: 109 LTLLPRPECSGAVSAHCNLHLPGSSDSHASVPRVAGITDAHHHAWLI 155
>gi|156231351 Niemann-Pick C1-like protein 1 isoform 1 [Homo sapiens]
Length = 1359
Score = 37.4 bits (85), Expect = 0.023
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 143 ILSPRLEYSGTILVDCNLCLLGSS 166
ILSPRLEYSGTI CNL LL S+
Sbjct: 1050 ILSPRLEYSGTISAHCNLYLLDST 1073
>gi|58533176 zinc finger, matrin type 1 isoform 1 [Homo sapiens]
Length = 638
Score = 35.8 bits (81), Expect = 0.068
Identities = 26/67 (38%), Positives = 31/67 (46%), Gaps = 12/67 (17%)
Query: 147 RLEYSGTILVDCNLCLLGSSDPSTLAFQVAGTAGACHHTRIVSKSQLPSENREGKVLWTG 206
RLE SG I C+L L GSSD A Q+AGT A + +E L+T
Sbjct: 8 RLECSGAISAHCSLHLPGSSDSPASASQIAGTTDAIWN------------EQEKAELFTD 55
Query: 207 WFCCVFG 213
FC V G
Sbjct: 56 KFCQVCG 62
>gi|239757631 PREDICTED: hypothetical protein XP_002345506 [Homo
sapiens]
Length = 127
Score = 35.4 bits (80), Expect = 0.089
Identities = 19/49 (38%), Positives = 26/49 (53%)
Query: 141 GLILSPRLEYSGTILVDCNLCLLGSSDPSTLAFQVAGTAGACHHTRIVS 189
GL LS RLE G I + L+GS +P T Q+A +HT ++S
Sbjct: 63 GLTLSSRLECCGAITAQGSFDLMGSGNPFTSVDQIAEITNVGNHTLLIS 111
>gi|239752121 PREDICTED: hypothetical protein XP_002348120 [Homo
sapiens]
Length = 127
Score = 35.4 bits (80), Expect = 0.089
Identities = 19/49 (38%), Positives = 26/49 (53%)
Query: 141 GLILSPRLEYSGTILVDCNLCLLGSSDPSTLAFQVAGTAGACHHTRIVS 189
GL LS RLE G I + L+GS +P T Q+A +HT ++S
Sbjct: 63 GLTLSSRLECCGAITAQGSFDLMGSGNPFTSVDQIAEITNVGNHTLLIS 111
>gi|239746631 PREDICTED: hypothetical protein XP_002344231 [Homo
sapiens]
Length = 127
Score = 35.4 bits (80), Expect = 0.089
Identities = 19/49 (38%), Positives = 26/49 (53%)
Query: 141 GLILSPRLEYSGTILVDCNLCLLGSSDPSTLAFQVAGTAGACHHTRIVS 189
GL LS RLE G I + L+GS +P T Q+A +HT ++S
Sbjct: 63 GLTLSSRLECCGAITAQGSFDLMGSGNPFTSVDQIAEITNVGNHTLLIS 111
>gi|222446642 solute carrier family 36, member 3 isoform 1 [Homo
sapiens]
Length = 511
Score = 35.0 bits (79), Expect = 0.12
Identities = 20/36 (55%), Positives = 22/36 (61%)
Query: 142 LILSPRLEYSGTILVDCNLCLLGSSDPSTLAFQVAG 177
L LSPRLE SG I CN L GSS+ A +VAG
Sbjct: 138 LALSPRLECSGKISAHCNPHLQGSSNSPAQASRVAG 173
>gi|66348062 fumarylacetoacetate hydrolase domain containing 1
isoform 1 [Homo sapiens]
Length = 248
Score = 34.7 bits (78), Expect = 0.15
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 138 LVQGLILSPRLEYSGTILVDCNLCLLGSSDP 168
L QGL LSP+LE S I C+L L GSS+P
Sbjct: 212 LRQGLTLSPKLECSSAITAHCSLELPGSSNP 242
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.134 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,175,967
Number of Sequences: 37866
Number of extensions: 654894
Number of successful extensions: 1613
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1568
Number of HSP's gapped (non-prelim): 53
length of query: 390
length of database: 18,247,518
effective HSP length: 104
effective length of query: 286
effective length of database: 14,309,454
effective search space: 4092503844
effective search space used: 4092503844
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.