Search of human proteins with 18104973

Search of human proteins with 18104973

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|18104973 protein tyrosine phosphatase type IVA, member 2
isoform 2 [Homo sapiens]
         (82 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|18104973 protein tyrosine phosphatase type IVA, member 2 isof...   168   7e-43
gi|18104971 protein tyrosine phosphatase type IVA, member 2 isof...   132   8e-32
gi|4506283 protein tyrosine phosphatase type IVA, member 1 [Homo...   116   3e-27
gi|169162376 PREDICTED: similar to protein tyrosine phosphatase ...   107   2e-24
gi|14589856 protein tyrosine phosphatase type IVA, member 3 isof...   105   6e-24
gi|14589854 protein tyrosine phosphatase type IVA, member 3 isof...   105   6e-24
gi|239753025 PREDICTED: similar to protein tyrosine phosphatase ...    58   2e-09
gi|94536807 U2 small nuclear RNA auxiliary factor 1-like 4 isofo...    28   2.1  
gi|94536809 U2 small nuclear RNA auxiliary factor 1-like 4 isofo...    27   4.6  
gi|145580590 hepatitis C virus F protein-binding protein 2 [Homo...    26   6.0  

>gi|18104973 protein tyrosine phosphatase type IVA, member 2
          isoform 2 [Homo sapiens]
          Length = 82

 Score =  168 bits (426), Expect = 7e-43
 Identities = 82/82 (100%), Positives = 82/82 (100%)

Query: 1  MNRPAPVEISYENMRFLITHNPTNATLNKFTEELKKYGVTTLVRVCDATYDKAPVEKEGI 60
          MNRPAPVEISYENMRFLITHNPTNATLNKFTEELKKYGVTTLVRVCDATYDKAPVEKEGI
Sbjct: 1  MNRPAPVEISYENMRFLITHNPTNATLNKFTEELKKYGVTTLVRVCDATYDKAPVEKEGI 60

Query: 61 HVLKKKGSVQFQTAALFGEIPT 82
          HVLKKKGSVQFQTAALFGEIPT
Sbjct: 61 HVLKKKGSVQFQTAALFGEIPT 82


>gi|18104971 protein tyrosine phosphatase type IVA, member 2
          isoform 1 [Homo sapiens]
          Length = 167

 Score =  132 bits (331), Expect = 8e-32
 Identities = 63/63 (100%), Positives = 63/63 (100%)

Query: 1  MNRPAPVEISYENMRFLITHNPTNATLNKFTEELKKYGVTTLVRVCDATYDKAPVEKEGI 60
          MNRPAPVEISYENMRFLITHNPTNATLNKFTEELKKYGVTTLVRVCDATYDKAPVEKEGI
Sbjct: 1  MNRPAPVEISYENMRFLITHNPTNATLNKFTEELKKYGVTTLVRVCDATYDKAPVEKEGI 60

Query: 61 HVL 63
          HVL
Sbjct: 61 HVL 63


>gi|4506283 protein tyrosine phosphatase type IVA, member 1 [Homo
          sapiens]
          Length = 173

 Score =  116 bits (291), Expect = 3e-27
 Identities = 54/63 (85%), Positives = 59/63 (93%)

Query: 1  MNRPAPVEISYENMRFLITHNPTNATLNKFTEELKKYGVTTLVRVCDATYDKAPVEKEGI 60
          MNRPAPVE++Y+NMRFLITHNPTNATLNKF EELKKYGVTT+VRVC+ATYD   VEKEGI
Sbjct: 4  MNRPAPVEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATYDTTLVEKEGI 63

Query: 61 HVL 63
          HVL
Sbjct: 64 HVL 66


>gi|169162376 PREDICTED: similar to protein tyrosine phosphatase
          4a1 isoform 1 [Homo sapiens]
          Length = 170

 Score =  107 bits (267), Expect = 2e-24
 Identities = 49/63 (77%), Positives = 55/63 (87%)

Query: 1  MNRPAPVEISYENMRFLITHNPTNATLNKFTEELKKYGVTTLVRVCDATYDKAPVEKEGI 60
          MN PAPV+++Y+NMRF ITHNPTN TLNKF EELKKYG TT+VRVC+ATYD   VEKEGI
Sbjct: 1  MNHPAPVKVTYKNMRFPITHNPTNVTLNKFIEELKKYGATTIVRVCEATYDTTLVEKEGI 60

Query: 61 HVL 63
          HVL
Sbjct: 61 HVL 63


>gi|14589856 protein tyrosine phosphatase type IVA, member 3
          isoform 1 [Homo sapiens]
          Length = 173

 Score =  105 bits (263), Expect = 6e-24
 Identities = 47/63 (74%), Positives = 57/63 (90%)

Query: 1  MNRPAPVEISYENMRFLITHNPTNATLNKFTEELKKYGVTTLVRVCDATYDKAPVEKEGI 60
          MNRPAPVE+SY++MRFLITHNPTNATL+ F E+LKKYG TT+VRVC+ TYDK P+EK+GI
Sbjct: 4  MNRPAPVEVSYKHMRFLITHNPTNATLSTFIEDLKKYGATTVVRVCEVTYDKTPLEKDGI 63

Query: 61 HVL 63
           V+
Sbjct: 64 TVV 66


>gi|14589854 protein tyrosine phosphatase type IVA, member 3
          isoform 2 [Homo sapiens]
          Length = 148

 Score =  105 bits (263), Expect = 6e-24
 Identities = 47/63 (74%), Positives = 57/63 (90%)

Query: 1  MNRPAPVEISYENMRFLITHNPTNATLNKFTEELKKYGVTTLVRVCDATYDKAPVEKEGI 60
          MNRPAPVE+SY++MRFLITHNPTNATL+ F E+LKKYG TT+VRVC+ TYDK P+EK+GI
Sbjct: 4  MNRPAPVEVSYKHMRFLITHNPTNATLSTFIEDLKKYGATTVVRVCEVTYDKTPLEKDGI 63

Query: 61 HVL 63
           V+
Sbjct: 64 TVV 66


>gi|239753025 PREDICTED: similar to protein tyrosine phosphatase
          4a1 isoform 2 [Homo sapiens]
          Length = 139

 Score = 57.8 bits (138), Expect = 2e-09
 Identities = 24/33 (72%), Positives = 29/33 (87%)

Query: 1  MNRPAPVEISYENMRFLITHNPTNATLNKFTEE 33
          MN PAPV+++Y+NMRF ITHNPTN TLNKF E+
Sbjct: 1  MNHPAPVKVTYKNMRFPITHNPTNVTLNKFIED 33


>gi|94536807 U2 small nuclear RNA auxiliary factor 1-like 4 isoform
           2 [Homo sapiens]
          Length = 202

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 8/70 (11%)

Query: 20  HNPTNATLNKFTEELKKYGVTTLVRVCD--------ATYDKAPVEKEGIHVLKKKGSVQF 71
           HN    +   FTE  +KYG    + VCD          Y K   E++G   + +  +  F
Sbjct: 37  HNKPTFSQEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDGERAVAELSNRWF 96

Query: 72  QTAALFGEIP 81
              A+ G +P
Sbjct: 97  NGQAVHGNVP 106


>gi|94536809 U2 small nuclear RNA auxiliary factor 1-like 4 isoform
           1 [Homo sapiens]
          Length = 181

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 8/69 (11%)

Query: 20  HNPTNATLNKFTEELKKYGVTTLVRVCD--------ATYDKAPVEKEGIHVLKKKGSVQF 71
           HN    +   FTE  +KYG    + VCD          Y K   E++G   + +  +  F
Sbjct: 37  HNKPTFSQEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDGERAVAELSNRWF 96

Query: 72  QTAALFGEI 80
              A+ GE+
Sbjct: 97  NGQAVHGEL 105


>gi|145580590 hepatitis C virus F protein-binding protein 2 [Homo
           sapiens]
          Length = 938

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 4/71 (5%)

Query: 6   PVEISYENMRFLITHNPTNATLNKFTEELKKYGVTTLVRVCDATYDKAPVEKEGIHVLKK 65
           PV++  +    L     ++  L +F  +L K  V  LV+ C     K P  KE +H  + 
Sbjct: 498 PVKLYSDARNVLSGIIDSHENLKEFKGDLIKVLVWILVQYCS----KRPGMKENVHNTEN 553

Query: 66  KGSVQFQTAAL 76
           KG       AL
Sbjct: 554 KGKAPLMLPAL 564


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.132    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,845,347
Number of Sequences: 37866
Number of extensions: 92266
Number of successful extensions: 230
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 223
Number of HSP's gapped (non-prelim): 10
length of query: 82
length of database: 18,247,518
effective HSP length: 54
effective length of query: 28
effective length of database: 16,202,754
effective search space: 453677112
effective search space used: 453677112
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.