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Search of human proteins with 17998700
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|17998700 phosphatidylinositol glycan anchor biosynthesis,
class U [Homo sapiens]
(435 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|17998700 phosphatidylinositol glycan anchor biosynthesis, cla... 865 0.0
gi|21553315 phosphatidylinositol glycan anchor biosynthesis, cla... 49 7e-06
gi|190194386 transmembrane 9 superfamily member 3 [Homo sapiens] 33 0.39
gi|189571654 leptin receptor overlapping transcript-like 1 isofo... 32 0.86
gi|189571652 leptin receptor overlapping transcript-like 1 isofo... 32 1.1
gi|183979982 chemokine (C-C motif) receptor 2 isoform B [Homo sa... 30 3.3
gi|183979980 chemokine (C-C motif) receptor 2 isoform A [Homo sa... 30 3.3
gi|42558246 lysocardiolipin acyltransferase 1 isoform 1 [Homo sa... 30 4.3
gi|50659059 lysocardiolipin acyltransferase 1 isoform 2 [Homo sa... 30 4.3
gi|32469495 potassium channel, subfamily K, member 18 [Homo sapi... 30 4.3
gi|33457301 glycerophosphodiester phosphodiesterase domain conta... 30 4.3
gi|196123589 NADH dehydrogenase subunit 5 [Homo sapiens neandert... 30 5.6
gi|251831117 NADH dehydrogenase subunit 5 [Homo sapiens] 30 5.6
gi|14277677 protocadherin gamma subfamily C, 3 isoform 2 precurs... 29 7.3
gi|14277675 protocadherin gamma subfamily C, 3 isoform 1 precurs... 29 7.3
gi|55749804 aminopeptidase Fxna [Homo sapiens] 29 7.3
gi|117168248 protein tyrosine phosphatase-like A domain containi... 29 7.3
gi|28373078 sialyltransferase 6 isoform f [Homo sapiens] 29 9.6
gi|28373076 sialyltransferase 6 isoform e [Homo sapiens] 29 9.6
gi|28373074 sialyltransferase 6 isoform d [Homo sapiens] 29 9.6
gi|5454060 sialyltransferase 6 isoform j [Homo sapiens] 29 9.6
>gi|17998700 phosphatidylinositol glycan anchor biosynthesis, class
U [Homo sapiens]
Length = 435
Score = 865 bits (2235), Expect = 0.0
Identities = 435/435 (100%), Positives = 435/435 (100%)
Query: 1 MAAPLVLVLVVAVTVRAALFRSSLAEFISERVEVVSPLSSWKRVVEGLSLLDLGVSPYSG 60
MAAPLVLVLVVAVTVRAALFRSSLAEFISERVEVVSPLSSWKRVVEGLSLLDLGVSPYSG
Sbjct: 1 MAAPLVLVLVVAVTVRAALFRSSLAEFISERVEVVSPLSSWKRVVEGLSLLDLGVSPYSG 60
Query: 61 AVFHETPLIIYLFHFLIDYAELVFMITDALTAIALYFAIQDFNKVVFKKQKLLLELDQYA 120
AVFHETPLIIYLFHFLIDYAELVFMITDALTAIALYFAIQDFNKVVFKKQKLLLELDQYA
Sbjct: 61 AVFHETPLIIYLFHFLIDYAELVFMITDALTAIALYFAIQDFNKVVFKKQKLLLELDQYA 120
Query: 121 PDVAELIRTPMEMRYIPLKVALFYLLNPYTILSCVAKSTCAINNTLIAFFILTTIKGSAF 180
PDVAELIRTPMEMRYIPLKVALFYLLNPYTILSCVAKSTCAINNTLIAFFILTTIKGSAF
Sbjct: 121 PDVAELIRTPMEMRYIPLKVALFYLLNPYTILSCVAKSTCAINNTLIAFFILTTIKGSAF 180
Query: 181 LSAIFLALATYQSLYPLTLFVPGLLYLLQRQYIPVKMKSKAFWIFSWEYAMMYVGSLVVI 240
LSAIFLALATYQSLYPLTLFVPGLLYLLQRQYIPVKMKSKAFWIFSWEYAMMYVGSLVVI
Sbjct: 181 LSAIFLALATYQSLYPLTLFVPGLLYLLQRQYIPVKMKSKAFWIFSWEYAMMYVGSLVVI 240
Query: 241 ICLSFFLLSSWDFIPAVYGFILSVPDLTPNIGLFWYFFAEMFEHFSLFFVCVFQINVFFY 300
ICLSFFLLSSWDFIPAVYGFILSVPDLTPNIGLFWYFFAEMFEHFSLFFVCVFQINVFFY
Sbjct: 241 ICLSFFLLSSWDFIPAVYGFILSVPDLTPNIGLFWYFFAEMFEHFSLFFVCVFQINVFFY 300
Query: 301 TIPLAIKLKEHPIFFMFIQIAVIAIFKSYPTVGDVALYMAFFPVWNHLYRFLRNIFVLTC 360
TIPLAIKLKEHPIFFMFIQIAVIAIFKSYPTVGDVALYMAFFPVWNHLYRFLRNIFVLTC
Sbjct: 301 TIPLAIKLKEHPIFFMFIQIAVIAIFKSYPTVGDVALYMAFFPVWNHLYRFLRNIFVLTC 360
Query: 361 IIIVCSLLFPVLWHLWIYAGSANSNFFYAITLTFNVGQILLISDYFYAFLRREYYLTHGL 420
IIIVCSLLFPVLWHLWIYAGSANSNFFYAITLTFNVGQILLISDYFYAFLRREYYLTHGL
Sbjct: 361 IIIVCSLLFPVLWHLWIYAGSANSNFFYAITLTFNVGQILLISDYFYAFLRREYYLTHGL 420
Query: 421 YLTAKDGTEAMLVLK 435
YLTAKDGTEAMLVLK
Sbjct: 421 YLTAKDGTEAMLVLK 435
>gi|21553315 phosphatidylinositol glycan anchor biosynthesis, class
M [Homo sapiens]
Length = 423
Score = 49.3 bits (116), Expect = 7e-06
Identities = 74/322 (22%), Positives = 118/322 (36%), Gaps = 60/322 (18%)
Query: 54 GVSPYSGAVFHETPLIIYLFHFLIDYAEL----VFMITDALTAIALYFAIQDFNKVVFKK 109
G SPY A + TPL+ +L I +EL +F+ D LTA LY +
Sbjct: 65 GRSPYLRATYRYTPLLGWLLTPNIYLSELFGKFLFISCDLLTAFLLYRLL---------- 114
Query: 110 QKLLLELDQYAPDVAELIRTPMEMRYIPLKVALFYLLNPYTILSCVAKSTCAINNTLIAF 169
LL L R +F+LLNP + + +I +L+
Sbjct: 115 --LLKGLG----------------RRQACGYCVFWLLNPLPMAVSSRGNADSIVASLVLM 156
Query: 170 FILTTIKGSAFLSAIFLALATYQSLYPLTLFVPGLLYLLQRQYIPVKMKSKAFWIFSWEY 229
+ K +A+F A + +YP+T +P L+LL P + K+ F + +
Sbjct: 157 VLYLIKKRLVACAAVFYGFAVHMKIYPVTYILPITLHLL-----PDRDNDKSLRQFRYTF 211
Query: 230 -AMMY----------VGSLVVIICLSFFLLS-------SWDFIPAVYGFILSVPDLTPNI 271
A +Y V V + L+FF LS W+F+ Y + L+ D+ N
Sbjct: 212 QACLYELLKRLCNRAVLLFVAVAGLTFFALSFGFYYEYGWEFLEHTYFYHLTRRDIRHNF 271
Query: 272 GLFWYFF---AEMFEHFSLFFVCVFQINVFFYTIPLAIKLKEHPIFFMFIQIAVIAIFKS 328
++Y AE FSL + + A +F F+ ++ F
Sbjct: 272 SPYFYMLYLTAESKWSFSLGIAAFLPQLILLSAVSFA--YYRDLVFCCFLHTSIFVTFNK 329
Query: 329 YPTVGDVALYMAFFPVWNHLYR 350
T Y+ P+ L R
Sbjct: 330 VCTSQYFLWYLCLLPLVMPLVR 351
>gi|190194386 transmembrane 9 superfamily member 3 [Homo sapiens]
Length = 589
Score = 33.5 bits (75), Expect = 0.39
Identities = 62/279 (22%), Positives = 108/279 (38%), Gaps = 71/279 (25%)
Query: 172 LTTIKGSAFLSAIFLALATYQSLYPLTLFVPGLLYLLQ--RQYI----------PVKMKS 219
L T +GS +AIF+ AT P+ + G LY Q R++I P +
Sbjct: 317 LYTERGSMLSTAIFVYAATS----PVNGYFGGSLYARQGGRRWIKQMFIGAFLIPAMVCG 372
Query: 220 KAFWIFSWEYAMMYV--------GSLVVIICLSFFLLSSWDFIPAVYGFILSVPDLTPNI 271
AF+I + +Y G++V + C+ FF++ + + + G LS PN
Sbjct: 373 TAFFI---NFIAIYYHASRAIPFGTMVAVCCICFFVILPLNLVGTILGRNLSGQ---PN- 425
Query: 272 GLFWYFFAEMFEHFSLFFVCVFQINVFFYTIPLAIKLKEHPIFFMFIQIAVIAIFKSYPT 331
F C ++N +P I K+ F++ AVI
Sbjct: 426 -----------------FPC--RVNA----VPRPIPEKK-----WFMEPAVIVCLGGILP 457
Query: 332 VGDV--ALYMAFFPVWNH----LYRFLRNIFVLTCIIIVCSLLFPVLWHLWIYAGSANSN 385
G + +Y F W + +Y F+ + V+ CI+ VC + V + + A
Sbjct: 458 FGSIFIEMYFIFTSFWAYKIYYVYGFMMLVLVILCIVTVCVTI--VCTYFLLNAEDYRWQ 515
Query: 386 FFYAITLTFNVGQILLISDYFYAFLRREYYLTHGLYLTA 424
+ ++ + + S Y+Y F + Y GL+ T+
Sbjct: 516 WTSFLSAASTAIYVYMYSFYYYFFKTKMY----GLFQTS 550
>gi|189571654 leptin receptor overlapping transcript-like 1 isoform
2 [Homo sapiens]
Length = 169
Score = 32.3 bits (72), Expect = 0.86
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 130 PMEMRYIPLKVALFYLLN--PYTILSCVAKSTCAINNTL--IAFFILTTIKGSAFLSAIF 185
P+ +Y PL V FY+L+ PY I + T A++N +A F+ T I SAF I
Sbjct: 28 PIYNKYWPLFVLFFYILSPIPYCIARRLVDDTDAMSNACKELAIFLTTGIVVSAFGLPIV 87
Query: 186 LALATYQSLYP 196
A A P
Sbjct: 88 FARAHLMGRLP 98
>gi|189571652 leptin receptor overlapping transcript-like 1 isoform
1 [Homo sapiens]
Length = 131
Score = 32.0 bits (71), Expect = 1.1
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 130 PMEMRYIPLKVALFYLLN--PYTILSCVAKSTCAINNTL--IAFFILTTIKGSAFLSAIF 185
P+ +Y PL V FY+L+ PY I + T A++N +A F+ T I SAF I
Sbjct: 28 PIYNKYWPLFVLFFYILSPIPYCIARRLVDDTDAMSNACKELAIFLTTGIVVSAFGLPIV 87
Query: 186 LALA 189
A A
Sbjct: 88 FARA 91
>gi|183979982 chemokine (C-C motif) receptor 2 isoform B [Homo
sapiens]
Length = 360
Score = 30.4 bits (67), Expect = 3.3
Identities = 34/176 (19%), Positives = 73/176 (41%), Gaps = 36/176 (20%)
Query: 224 IFSWEYAMMYVGSLVVII---------CLSFFLLSSWDFIPAVYGFILSVPDLTPNIGLF 274
++S + +VG+++V++ CL+ L + + F++++P +
Sbjct: 48 LYSLVFIFGFVGNMLVVLILINCKKLKCLTDIYLLNLAISDLL--FLITLPLWAHSAANE 105
Query: 275 WYFFAEMFEHFS----------LFFVCVFQINVFFYTIPLAIKLKEHPIFFMFIQIAV-- 322
W F M + F+ +FF+ + I+ + + LK + F + +
Sbjct: 106 WVFGNAMCKLFTGLYHIGYFGGIFFIILLTIDRYLAIVHAVFALKARTVTFGVVTSVITW 165
Query: 323 -IAIFKSYPTV--------GDVALYMAFFPV-WNHLYRFLRNIFVLT---CIIIVC 365
+A+F S P + V + +FP WN+ + +RNI L I+++C
Sbjct: 166 LVAVFASVPGIIFTKCQKEDSVYVCGPYFPRGWNNFHTIMRNILGLVLPLLIMVIC 221
>gi|183979980 chemokine (C-C motif) receptor 2 isoform A [Homo
sapiens]
Length = 374
Score = 30.4 bits (67), Expect = 3.3
Identities = 34/176 (19%), Positives = 73/176 (41%), Gaps = 36/176 (20%)
Query: 224 IFSWEYAMMYVGSLVVII---------CLSFFLLSSWDFIPAVYGFILSVPDLTPNIGLF 274
++S + +VG+++V++ CL+ L + + F++++P +
Sbjct: 48 LYSLVFIFGFVGNMLVVLILINCKKLKCLTDIYLLNLAISDLL--FLITLPLWAHSAANE 105
Query: 275 WYFFAEMFEHFS----------LFFVCVFQINVFFYTIPLAIKLKEHPIFFMFIQIAV-- 322
W F M + F+ +FF+ + I+ + + LK + F + +
Sbjct: 106 WVFGNAMCKLFTGLYHIGYFGGIFFIILLTIDRYLAIVHAVFALKARTVTFGVVTSVITW 165
Query: 323 -IAIFKSYPTV--------GDVALYMAFFPV-WNHLYRFLRNIFVLT---CIIIVC 365
+A+F S P + V + +FP WN+ + +RNI L I+++C
Sbjct: 166 LVAVFASVPGIIFTKCQKEDSVYVCGPYFPRGWNNFHTIMRNILGLVLPLLIMVIC 221
>gi|42558246 lysocardiolipin acyltransferase 1 isoform 1 [Homo
sapiens]
Length = 414
Score = 30.0 bits (66), Expect = 4.3
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 17/123 (13%)
Query: 144 YLLNPYTILSCVAKSTCA-INNTLIAFFILTTIKGSAFLSAIFLALATYQSLYPLTLFVP 202
++L+P+ L V S INN L+A ++ + A L +F + + FVP
Sbjct: 61 FMLSPFLPLMFVNPSWYRWINNRLVATWLTLPV---ALLETMF----GVKVIITGDAFVP 113
Query: 203 GLLYLLQRQYIPVKMKSKAFWIFSWEYAMMYVGSLVVIICLSFFLLS----SWDFIPAVY 258
G +R I + +++ W+F W M Y + ICL L W A Y
Sbjct: 114 G-----ERSVIIMNHRTRMDWMFLWNCLMRYSYLRLEKICLKASLKGVPGFGWAMQAAAY 168
Query: 259 GFI 261
FI
Sbjct: 169 IFI 171
>gi|50659059 lysocardiolipin acyltransferase 1 isoform 2 [Homo
sapiens]
Length = 376
Score = 30.0 bits (66), Expect = 4.3
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 17/123 (13%)
Query: 144 YLLNPYTILSCVAKSTCA-INNTLIAFFILTTIKGSAFLSAIFLALATYQSLYPLTLFVP 202
++L+P+ L V S INN L+A ++ + A L +F + + FVP
Sbjct: 23 FMLSPFLPLMFVNPSWYRWINNRLVATWLTLPV---ALLETMF----GVKVIITGDAFVP 75
Query: 203 GLLYLLQRQYIPVKMKSKAFWIFSWEYAMMYVGSLVVIICLSFFLLS----SWDFIPAVY 258
G +R I + +++ W+F W M Y + ICL L W A Y
Sbjct: 76 G-----ERSVIIMNHRTRMDWMFLWNCLMRYSYLRLEKICLKASLKGVPGFGWAMQAAAY 130
Query: 259 GFI 261
FI
Sbjct: 131 IFI 133
>gi|32469495 potassium channel, subfamily K, member 18 [Homo
sapiens]
Length = 384
Score = 30.0 bits (66), Expect = 4.3
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 12/81 (14%)
Query: 277 FFAEMFEHFSLFFVCVFQINVFFYTIPLAIKLKEHPIFFMFIQIAVIAIFKSYPTVGDVA 336
F+ + + F+ C + TI + EHP FF+F I +I VG
Sbjct: 303 FWETQLDFENAFYFCFVTLT----TIGFGDTVLEHPNFFLFFSIYII--------VGMEI 350
Query: 337 LYMAFFPVWNHLYRFLRNIFV 357
+++AF V N L +N+ +
Sbjct: 351 VFIAFKLVQNRLIDIYKNVML 371
>gi|33457301 glycerophosphodiester phosphodiesterase domain
containing 4 [Homo sapiens]
Length = 520
Score = 30.0 bits (66), Expect = 4.3
Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 13/118 (11%)
Query: 314 FFMFIQIAVIAIFKSYPTVGDVALYMAFFPVWNH--LYRFLRNIFVLTCIIIVCSLLFPV 371
++ F I ++++ + + L + F +W LY L + ++ +I++C +L +
Sbjct: 26 YWFFWSIFILSLARILTAYSSLLLLLGFLLLWERIELYLHLCHKILILLVILLCVILMFI 85
Query: 372 L---W-HLWIYAGSANSNFF-YAITLTFNVGQILLISDYFY-AFLRRE-----YYLTH 418
+ W W+ AG + F Y ++ V IL FY A L RE Y +TH
Sbjct: 86 ICKFWKERWLVAGLSMQIFAPYVHLVSITVMVILFWPVAFYVACLEREVRMRRYRMTH 143
>gi|196123589 NADH dehydrogenase subunit 5 [Homo sapiens
neanderthalensis]
Length = 603
Score = 29.6 bits (65), Expect = 5.6
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 13/66 (19%)
Query: 221 AFWIFSWEYA-----------MMY--VGSLVVIICLSFFLLSSWDFIPAVYGFILSVPDL 267
+F + SW YA ++Y +G + I+ L++F+L S + P + + P L
Sbjct: 151 SFLLISWWYARADANTAAIQAILYNRIGDIGFILALAWFILHSNSWDPQQMALLNANPSL 210
Query: 268 TPNIGL 273
TP +GL
Sbjct: 211 TPLLGL 216
>gi|251831117 NADH dehydrogenase subunit 5 [Homo sapiens]
Length = 603
Score = 29.6 bits (65), Expect = 5.6
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 13/66 (19%)
Query: 221 AFWIFSWEYA-----------MMY--VGSLVVIICLSFFLLSSWDFIPAVYGFILSVPDL 267
+F + SW YA ++Y +G + I+ L++F+L S + P + + P L
Sbjct: 151 SFLLISWWYARADANTAAIQAILYNRIGDIGFILALAWFILHSNSWDPQQMALLNANPSL 210
Query: 268 TPNIGL 273
TP +GL
Sbjct: 211 TPLLGL 216
>gi|14277677 protocadherin gamma subfamily C, 3 isoform 2 precursor
[Homo sapiens]
Length = 863
Score = 29.3 bits (64), Expect = 7.3
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 82 LVFMITDALTAIALYFAIQDFNKVVFKKQKLLLELDQYAPDVAELIRTP 130
L F + +L +++ F + F ++FK K D Y V+ L RTP
Sbjct: 690 LTFYLLLSLILVSVGFVVTVFGVIIFKVYKWKQSRDLYRAPVSSLYRTP 738
>gi|14277675 protocadherin gamma subfamily C, 3 isoform 1 precursor
[Homo sapiens]
Length = 934
Score = 29.3 bits (64), Expect = 7.3
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 82 LVFMITDALTAIALYFAIQDFNKVVFKKQKLLLELDQYAPDVAELIRTP 130
L F + +L +++ F + F ++FK K D Y V+ L RTP
Sbjct: 690 LTFYLLLSLILVSVGFVVTVFGVIIFKVYKWKQSRDLYRAPVSSLYRTP 738
>gi|55749804 aminopeptidase Fxna [Homo sapiens]
Length = 904
Score = 29.3 bits (64), Expect = 7.3
Identities = 31/153 (20%), Positives = 59/153 (38%), Gaps = 20/153 (13%)
Query: 277 FFAEMFEHFSLFFVCVFQINVFFYTI------------PLAIKL------KEHPIFFMFI 318
+ E+F SLF C F + + + + PL KL K+H FI
Sbjct: 522 YLGEVFFDISLFVHCCFLVTLTYQGLCSAFISAVWVAFPLLTKLCVHKDFKQHGAQGKFI 581
Query: 319 QIAVIAIFKSYPTVGDV--ALYMAFFPVWNHLYRFLRNIFVLTCIIIVCSLLFPVLWHLW 376
++ +F Y + A++ F P+ + VL I+ C+++ + +
Sbjct: 582 AFYLLGMFIPYLYALYLIWAVFEMFTPILGRSGSEIPPDVVLASILAGCTMILSSYFINF 641
Query: 377 IYAGSANSNFFYAITLTFNVGQILLISDYFYAF 409
IY + +TL + +L+ S F+ +
Sbjct: 642 IYLAKSTKKTMLTLTLVCAITFLLVCSGTFFPY 674
>gi|117168248 protein tyrosine phosphatase-like A domain containing
1 [Homo sapiens]
Length = 362
Score = 29.3 bits (64), Expect = 7.3
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 301 TIPLAIKLKEHPIFFMFIQIA-----VIAIFKSYPTVGDVALYMAFFPVWNHLYRFLRNI 355
TI AI + P+ IQ+ + IF + + + A+ F +W+ + F +
Sbjct: 202 TINAAIGVTTSPVLPSLIQLLGRNFILFIIFGTMEEMQNKAVVFFVFYLWSAIEIFRYSF 261
Query: 356 FVLTCIIIVCSLLFPVLWHLWI 377
++LTCI + +L + + LWI
Sbjct: 262 YMLTCIDMDWKVLTWLRYTLWI 283
>gi|28373078 sialyltransferase 6 isoform f [Homo sapiens]
Length = 429
Score = 28.9 bits (63), Expect = 9.6
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 351 FLRNIFVLTCIIIVCSLLFPVLWHLWIYAGSANSNFFYAITLTFNVGQILLISDY 405
F+RN+ + C+ +V L+ W L + +SN ++ L+F+ L S+Y
Sbjct: 6 FVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDSN---SVVLSFDSAGQTLGSEY 57
>gi|28373076 sialyltransferase 6 isoform e [Homo sapiens]
Length = 155
Score = 28.9 bits (63), Expect = 9.6
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 351 FLRNIFVLTCIIIVCSLLFPVLWHLWIYAGSANSNFFYAITLTFNVGQILLISDY 405
F+RN+ + C+ +V L+ W L + +SN ++ L+F+ L S+Y
Sbjct: 6 FVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDSN---SVVLSFDSAGQTLGSEY 57
>gi|28373074 sialyltransferase 6 isoform d [Homo sapiens]
Length = 277
Score = 28.9 bits (63), Expect = 9.6
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 351 FLRNIFVLTCIIIVCSLLFPVLWHLWIYAGSANSNFFYAITLTFNVGQILLISDY 405
F+RN+ + C+ +V L+ W L + +SN ++ L+F+ L S+Y
Sbjct: 6 FVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDSN---SVVLSFDSAGQTLGSEY 57
>gi|5454060 sialyltransferase 6 isoform j [Homo sapiens]
Length = 375
Score = 28.9 bits (63), Expect = 9.6
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 351 FLRNIFVLTCIIIVCSLLFPVLWHLWIYAGSANSNFFYAITLTFNVGQILLISDY 405
F+RN+ + C+ +V L+ W L + +SN ++ L+F+ L S+Y
Sbjct: 6 FVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDSN---SVVLSFDSAGQTLGSEY 57
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.334 0.146 0.454
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,849,611
Number of Sequences: 37866
Number of extensions: 545686
Number of successful extensions: 2128
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 2114
Number of HSP's gapped (non-prelim): 28
length of query: 435
length of database: 18,247,518
effective HSP length: 105
effective length of query: 330
effective length of database: 14,271,588
effective search space: 4709624040
effective search space used: 4709624040
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.