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Search of human proteins with 169217473
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169217473 PREDICTED: similar to anaphase promoting complex
subunit 1 [Homo sapiens]
(168 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169217473 PREDICTED: similar to anaphase promoting complex su... 342 7e-95
gi|12056971 anaphase promoting complex subunit 1 [Homo sapiens] 302 1e-82
gi|14196451 protocadherin gamma subfamily A, 11 isoform 2 precur... 30 0.97
gi|11128039 protocadherin gamma subfamily A, 11 isoform 1 precur... 30 0.97
gi|14196455 protocadherin gamma subfamily A, 11 isoform 3 precur... 30 0.97
gi|38505226 E2F family member 8 [Homo sapiens] 29 2.2
gi|110347568 centrosomal protein 152kDa [Homo sapiens] 29 2.2
gi|109637791 transcription factor-like nuclear regulator [Homo s... 28 2.8
gi|239742426 PREDICTED: hypothetical protein XP_002342512, parti... 27 6.3
gi|42716287 WD repeat domain 41 [Homo sapiens] 27 6.3
>gi|169217473 PREDICTED: similar to anaphase promoting complex
subunit 1 [Homo sapiens]
Length = 168
Score = 342 bits (878), Expect = 7e-95
Identities = 168/168 (100%), Positives = 168/168 (100%)
Query: 1 MGQKQEILDLFSSVLYECVTQETPEMLPAYIAMDQAIRRLGRREMSETSELWQIKLVLEF 60
MGQKQEILDLFSSVLYECVTQETPEMLPAYIAMDQAIRRLGRREMSETSELWQIKLVLEF
Sbjct: 1 MGQKQEILDLFSSVLYECVTQETPEMLPAYIAMDQAIRRLGRREMSETSELWQIKLVLEF 60
Query: 61 FSSRSHQERLQNHPKRGLFMNSEFLPVVKCTIDNTLDQWLQVGGDMCVHAYLSGQPLEES 120
FSSRSHQERLQNHPKRGLFMNSEFLPVVKCTIDNTLDQWLQVGGDMCVHAYLSGQPLEES
Sbjct: 61 FSSRSHQERLQNHPKRGLFMNSEFLPVVKCTIDNTLDQWLQVGGDMCVHAYLSGQPLEES 120
Query: 121 QLSMLACFLVYHSVPAPQHLPPIGLEGFQLGFLESHIILISNITKLYN 168
QLSMLACFLVYHSVPAPQHLPPIGLEGFQLGFLESHIILISNITKLYN
Sbjct: 121 QLSMLACFLVYHSVPAPQHLPPIGLEGFQLGFLESHIILISNITKLYN 168
>gi|12056971 anaphase promoting complex subunit 1 [Homo sapiens]
Length = 1944
Score = 302 bits (773), Expect = 1e-82
Identities = 147/147 (100%), Positives = 147/147 (100%)
Query: 1 MGQKQEILDLFSSVLYECVTQETPEMLPAYIAMDQAIRRLGRREMSETSELWQIKLVLEF 60
MGQKQEILDLFSSVLYECVTQETPEMLPAYIAMDQAIRRLGRREMSETSELWQIKLVLEF
Sbjct: 1761 MGQKQEILDLFSSVLYECVTQETPEMLPAYIAMDQAIRRLGRREMSETSELWQIKLVLEF 1820
Query: 61 FSSRSHQERLQNHPKRGLFMNSEFLPVVKCTIDNTLDQWLQVGGDMCVHAYLSGQPLEES 120
FSSRSHQERLQNHPKRGLFMNSEFLPVVKCTIDNTLDQWLQVGGDMCVHAYLSGQPLEES
Sbjct: 1821 FSSRSHQERLQNHPKRGLFMNSEFLPVVKCTIDNTLDQWLQVGGDMCVHAYLSGQPLEES 1880
Query: 121 QLSMLACFLVYHSVPAPQHLPPIGLEG 147
QLSMLACFLVYHSVPAPQHLPPIGLEG
Sbjct: 1881 QLSMLACFLVYHSVPAPQHLPPIGLEG 1907
>gi|14196451 protocadherin gamma subfamily A, 11 isoform 2 precursor
[Homo sapiens]
Length = 837
Score = 30.0 bits (66), Expect = 0.97
Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 16/104 (15%)
Query: 46 SETSELWQIKLVLEFFSSRSHQERLQNHPKRGLFMNSEFLPVV--------KCTIDNTLD 97
S+T E+ Q++ L+F R ++ +Q GLF + L V + TI ++++
Sbjct: 297 SQTGEV-QVRGSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSIN 355
Query: 98 QWLQVGGDMCVHAYLSGQPLEESQLSMLACFLVYHSVPAPQHLP 141
L+ V A L+ Q + + ++CF+ P HLP
Sbjct: 356 SILENSPPGTVIALLNVQDQDSGENGQVSCFI-------PNHLP 392
>gi|11128039 protocadherin gamma subfamily A, 11 isoform 1 precursor
[Homo sapiens]
Length = 935
Score = 30.0 bits (66), Expect = 0.97
Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 16/104 (15%)
Query: 46 SETSELWQIKLVLEFFSSRSHQERLQNHPKRGLFMNSEFLPVV--------KCTIDNTLD 97
S+T E+ Q++ L+F R ++ +Q GLF + L V + TI ++++
Sbjct: 297 SQTGEV-QVRGSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSIN 355
Query: 98 QWLQVGGDMCVHAYLSGQPLEESQLSMLACFLVYHSVPAPQHLP 141
L+ V A L+ Q + + ++CF+ P HLP
Sbjct: 356 SILENSPPGTVIALLNVQDQDSGENGQVSCFI-------PNHLP 392
>gi|14196455 protocadherin gamma subfamily A, 11 isoform 3 precursor
[Homo sapiens]
Length = 750
Score = 30.0 bits (66), Expect = 0.97
Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 16/104 (15%)
Query: 46 SETSELWQIKLVLEFFSSRSHQERLQNHPKRGLFMNSEFLPVV--------KCTIDNTLD 97
S+T E+ Q++ L+F R ++ +Q GLF + L V + TI ++++
Sbjct: 297 SQTGEV-QVRGSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSIN 355
Query: 98 QWLQVGGDMCVHAYLSGQPLEESQLSMLACFLVYHSVPAPQHLP 141
L+ V A L+ Q + + ++CF+ P HLP
Sbjct: 356 SILENSPPGTVIALLNVQDQDSGENGQVSCFI-------PNHLP 392
>gi|38505226 E2F family member 8 [Homo sapiens]
Length = 867
Score = 28.9 bits (63), Expect = 2.2
Identities = 23/74 (31%), Positives = 27/74 (36%), Gaps = 16/74 (21%)
Query: 50 ELWQIKLVLEFFSSRSHQERLQNHPKRGLFMNSEFLPVVKCTIDNTLDQWLQVGGDMCVH 109
E W L+ S E KRGLF N LP K C+H
Sbjct: 55 EPWTPTANLKMLISAVSPEIRNRDQKRGLFDNRSGLPEAKD----------------CIH 98
Query: 110 AYLSGQPLEESQLS 123
+LSG E+SQ S
Sbjct: 99 EHLSGDEFEKSQPS 112
>gi|110347568 centrosomal protein 152kDa [Homo sapiens]
Length = 1654
Score = 28.9 bits (63), Expect = 2.2
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 69 RLQNHPKRGLFMNSEFLPVVKCTIDNTLDQWLQVGGDMCVHAYLSGQPLEESQL 122
RL++H K+ L N E + + K I N L + L+ C H SG E +QL
Sbjct: 397 RLKDHVKQ-LERNQEAIKLEKTEIINKLTRSLEESQKQCAHLLQSGSVQEVAQL 449
>gi|109637791 transcription factor-like nuclear regulator [Homo
sapiens]
Length = 2624
Score = 28.5 bits (62), Expect = 2.8
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 18 CVTQETPEMLPAYIAMDQAIRRLGRREMS 46
C+ ++TPE++ A +D+ + GRRE+S
Sbjct: 910 CLREKTPEVIDATEEIDKDLEEAGRREIS 938
>gi|239742426 PREDICTED: hypothetical protein XP_002342512, partial
[Homo sapiens]
Length = 201
Score = 27.3 bits (59), Expect = 6.3
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Query: 58 LEFFSSRSHQERLQNHPKRGLFMNS--EFLPVVKCTIDNTLDQWLQVGGDMCVHAYLSGQ 115
+ + SR +ER + P G NS PVV T+D L+ W + GG L Q
Sbjct: 79 VRWLRSRLLEERERVGP--GALKNSLKSSRPVVNLTVDVFLEWWEEYGGGQGARRLLEAQ 136
Query: 116 ---PLEES 120
PLE+S
Sbjct: 137 AEEPLEKS 144
>gi|42716287 WD repeat domain 41 [Homo sapiens]
Length = 459
Score = 27.3 bits (59), Expect = 6.3
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 84 FLPVVKC-TIDNTLDQWLQVGGDMCV 108
F VKC T+ LD WL G D+CV
Sbjct: 132 FQSTVKCLTVLQRLDVWLSGGNDLCV 157
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.137 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,364,609
Number of Sequences: 37866
Number of extensions: 262663
Number of successful extensions: 535
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 529
Number of HSP's gapped (non-prelim): 12
length of query: 168
length of database: 18,247,518
effective HSP length: 95
effective length of query: 73
effective length of database: 14,650,248
effective search space: 1069468104
effective search space used: 1069468104
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.