Guide to the Human Genome
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Name: LOC100134261 Sequence: fasta or formatted (168aa) NCBI GI: 169217473
Description:

PREDICTED: similar to anaphase promoting complex subunit 1

Referenced in:

Anaphase-promoting Complex

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.6          6           1
 C cysteine            2.4          4           1
 D aspartate           3.0          5           1
 E glutamate           8.3         14           2
 F phenylalanine       4.8          8           2
 G glycine             5.4          9           2
 H histidine           3.6          6           1
 I isoleucine          6.0         10           2
 K lysine              3.0          5           1
 L leucine            14.3         24           1
 M methionine          4.2          7           1
 N asparagine          3.0          5           1
 P proline             5.4          9           2
 Q glutamine           7.7         13           1
 R arginine            4.2          7           2
 S serine              8.3         14           2
 T threonine           3.6          6           1
 V valine              5.4          9           2
 W tryptophan          1.2          2           1
 Y tyrosine            3.0          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to anaphase promoting complex su... 
ANAPC1                0.874   anaphase promoting complex subunit 1 
PCDHGA11              0.016   protocadherin gamma subfamily A, 11 isoform 2 precur...
PCDHGA11              0.016   protocadherin gamma subfamily A, 11 isoform 1 precur...
PCDHGA11              0.016   protocadherin gamma subfamily A, 11 isoform 3 precur...
E2F8                  0.013   E2F family member 8 
CEP152                0.013   centrosomal protein 152kDa 
BDP1                  0.009   transcription factor-like nuclear regulator 
LOC100287219          0.006   PREDICTED: hypothetical protein XP_002342512, parti...
WDR41                 0.006   WD repeat domain 41 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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