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Search of human proteins with 169216983
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169216983 PREDICTED: similar to hCG2040277 [Homo sapiens]
(70 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169216983 PREDICTED: similar to hCG2040277 [Homo sapiens] 145 9e-36
gi|239752276 PREDICTED: similar to hCG2040277 [Homo sapiens] 145 9e-36
gi|239746789 PREDICTED: similar to hCG2040277 [Homo sapiens] 145 9e-36
gi|51944950 phosducin-like 2 [Homo sapiens] 135 7e-33
gi|13129044 phosducin-like 3 [Homo sapiens] 75 8e-15
gi|7706657 cell division cycle 40 homolog [Homo sapiens] 27 2.7
gi|190341068 forkhead-associated (FHA) phosphopeptide binding do... 27 3.5
gi|33391150 nucleoplasmin 2 [Homo sapiens] 27 3.5
gi|4502835 cholinergic receptor, nicotinic, beta polypeptide 3 [... 27 4.5
gi|154354987 hook homolog 2 isoform 2 [Homo sapiens] 27 4.5
gi|154354985 hook homolog 2 isoform 1 [Homo sapiens] 27 4.5
gi|118421085 leucine-rich repeat kinase 1 [Homo sapiens] 26 5.9
gi|239750384 PREDICTED: hypothetical protein XP_002347385 [Homo ... 26 7.7
gi|148612838 hypothetical protein LOC158358 [Homo sapiens] 26 7.7
>gi|169216983 PREDICTED: similar to hCG2040277 [Homo sapiens]
Length = 70
Score = 145 bits (365), Expect = 9e-36
Identities = 70/70 (100%), Positives = 70/70 (100%)
Query: 1 MQDPNEDTEWNDILRDFGILPPKEESKDEIEEMVLCLQKEAMVKPFEKMTLAQLKEAEDE 60
MQDPNEDTEWNDILRDFGILPPKEESKDEIEEMVLCLQKEAMVKPFEKMTLAQLKEAEDE
Sbjct: 1 MQDPNEDTEWNDILRDFGILPPKEESKDEIEEMVLCLQKEAMVKPFEKMTLAQLKEAEDE 60
Query: 61 FDEDMQAIET 70
FDEDMQAIET
Sbjct: 61 FDEDMQAIET 70
>gi|239752276 PREDICTED: similar to hCG2040277 [Homo sapiens]
Length = 70
Score = 145 bits (365), Expect = 9e-36
Identities = 70/70 (100%), Positives = 70/70 (100%)
Query: 1 MQDPNEDTEWNDILRDFGILPPKEESKDEIEEMVLCLQKEAMVKPFEKMTLAQLKEAEDE 60
MQDPNEDTEWNDILRDFGILPPKEESKDEIEEMVLCLQKEAMVKPFEKMTLAQLKEAEDE
Sbjct: 1 MQDPNEDTEWNDILRDFGILPPKEESKDEIEEMVLCLQKEAMVKPFEKMTLAQLKEAEDE 60
Query: 61 FDEDMQAIET 70
FDEDMQAIET
Sbjct: 61 FDEDMQAIET 70
>gi|239746789 PREDICTED: similar to hCG2040277 [Homo sapiens]
Length = 70
Score = 145 bits (365), Expect = 9e-36
Identities = 70/70 (100%), Positives = 70/70 (100%)
Query: 1 MQDPNEDTEWNDILRDFGILPPKEESKDEIEEMVLCLQKEAMVKPFEKMTLAQLKEAEDE 60
MQDPNEDTEWNDILRDFGILPPKEESKDEIEEMVLCLQKEAMVKPFEKMTLAQLKEAEDE
Sbjct: 1 MQDPNEDTEWNDILRDFGILPPKEESKDEIEEMVLCLQKEAMVKPFEKMTLAQLKEAEDE 60
Query: 61 FDEDMQAIET 70
FDEDMQAIET
Sbjct: 61 FDEDMQAIET 70
>gi|51944950 phosducin-like 2 [Homo sapiens]
Length = 241
Score = 135 bits (340), Expect = 7e-33
Identities = 68/71 (95%), Positives = 69/71 (97%), Gaps = 1/71 (1%)
Query: 1 MQDPNEDTEWNDILRDFGILPPKEESKDEIEEMVLCLQKEAMVKPFEKMTLAQLKEAEDE 60
MQDPNEDTEWNDILRDFGILPPKEESKDEIEEMVL LQKEAMVKPFEKMTLAQLKEAEDE
Sbjct: 1 MQDPNEDTEWNDILRDFGILPPKEESKDEIEEMVLRLQKEAMVKPFEKMTLAQLKEAEDE 60
Query: 61 FD-EDMQAIET 70
FD EDMQA+ET
Sbjct: 61 FDEEDMQAVET 71
>gi|13129044 phosducin-like 3 [Homo sapiens]
Length = 239
Score = 75.5 bits (184), Expect = 8e-15
Identities = 43/73 (58%), Positives = 54/73 (73%), Gaps = 5/73 (6%)
Query: 1 MQDPNEDTEWNDILRDFGILPPKE---ESKDEIEEMVLCLQKEAMVKPFEKMTLAQLKEA 57
MQDPN DTEWNDILR GILPPKE E ++E EE LQ +++VK +E MTL +L++
Sbjct: 1 MQDPNADTEWNDILRKKGILPPKESLKELEEEAEEEQRILQ-QSVVKTYEDMTLEELEDH 59
Query: 58 EDEF-DEDMQAIE 69
EDEF +ED +AIE
Sbjct: 60 EDEFNEEDERAIE 72
>gi|7706657 cell division cycle 40 homolog [Homo sapiens]
Length = 579
Score = 27.3 bits (59), Expect = 2.7
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 10 WNDILRDFGILPPKEESKDEIEEMVLCLQKEAM---VKPFEKMTLAQLKEAED 59
W + + + P EE + E++E+ QK+ KP E+ T+ +KE D
Sbjct: 196 WAKYVDEKDVAKPSEEEQKELDEITAKRQKKGKQEEEKPGEEKTILHVKEMYD 248
>gi|190341068 forkhead-associated (FHA) phosphopeptide binding domain
1 [Homo sapiens]
Length = 1412
Score = 26.9 bits (58), Expect = 3.5
Identities = 12/46 (26%), Positives = 28/46 (60%)
Query: 24 EESKDEIEEMVLCLQKEAMVKPFEKMTLAQLKEAEDEFDEDMQAIE 69
E+ K E+E+ V+ +Q+++ K +AQ+ ++ D +++A+E
Sbjct: 1034 EKQKMELEQNVVLVQQQSKELSVLKEKMAQMSSLVEKKDRELKALE 1079
>gi|33391150 nucleoplasmin 2 [Homo sapiens]
Length = 214
Score = 26.9 bits (58), Expect = 3.5
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 7 DTEWNDILRDFGILPPKEESKDEIEEMVLCLQKEAMVK------PFEKMTLAQLKEAEDE 60
D W + + G +EE DE E+ + L++++ VK P ++ ++A+ K+ E E
Sbjct: 125 DLTWEEEEEEEGEEEEEEEEDDEDEDADISLEEQSPVKQVKRLVPQKQASVAKKKKLEKE 184
Query: 61 FDE 63
+E
Sbjct: 185 EEE 187
>gi|4502835 cholinergic receptor, nicotinic, beta polypeptide 3
[Homo sapiens]
Length = 458
Score = 26.6 bits (57), Expect = 4.5
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 21 PPKEESKDEIEEMVLCLQKEAMVKPFEKMTLAQLKEAED 59
P KEES+ ++ VL +K+ + EK+ +A L++A D
Sbjct: 359 PEKEESQPVVKGKVLEKKKQKQLSDGEKVLVAFLEKAAD 397
>gi|154354987 hook homolog 2 isoform 2 [Homo sapiens]
Length = 717
Score = 26.6 bits (57), Expect = 4.5
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 15 RDFGILPPKEESKDEIEEMVLCLQKEAMVKPFEKMTLAQ 53
R + L + E DE+++ L L+++ M+ EK +LAQ
Sbjct: 175 RRYYFLSEEAEEGDELQQRCLDLERQLMLLSEEKQSLAQ 213
>gi|154354985 hook homolog 2 isoform 1 [Homo sapiens]
Length = 719
Score = 26.6 bits (57), Expect = 4.5
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 15 RDFGILPPKEESKDEIEEMVLCLQKEAMVKPFEKMTLAQ 53
R + L + E DE+++ L L+++ M+ EK +LAQ
Sbjct: 175 RRYYFLSEEAEEGDELQQRCLDLERQLMLLSEEKQSLAQ 213
>gi|118421085 leucine-rich repeat kinase 1 [Homo sapiens]
Length = 1910
Score = 26.2 bits (56), Expect = 5.9
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 11 NDILRDFGILPP----KEESKDEIEEMVLCLQKEAMVKPFEKMTLAQLKEAE 58
+D++ FG+L KEES E++ CL + K E+ T+A ++++
Sbjct: 507 SDLMESFGLLQAASANKEESSKTEGELIHCLAELYQRKSREESTIAHQEDSK 558
>gi|239750384 PREDICTED: hypothetical protein XP_002347385 [Homo
sapiens]
Length = 175
Score = 25.8 bits (55), Expect = 7.7
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 2 QDPNEDTEWNDILRDFGILPPKEESKDEIEEMVLCLQKEAMV 43
+DP+ + ++ G+ PP+EE E+ L Q+EA V
Sbjct: 59 RDPDWEAPFDQCACALGLCPPQEERSRELRRWWLGHQREAGV 100
>gi|148612838 hypothetical protein LOC158358 [Homo sapiens]
Length = 2103
Score = 25.8 bits (55), Expect = 7.7
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 21 PPKEESKDEIEEMVLCLQKEAMVKPFEKMTLAQLKEAEDEFDEDMQAI 68
PP E +D+ EE+ Q P + + L++A+D+ +E+M+A+
Sbjct: 20 PPAAEGEDDEEEVAAAAQTSG---PAHGRSASSLEDADDQ-EEEMEAM 63
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.131 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,836,252
Number of Sequences: 37866
Number of extensions: 104091
Number of successful extensions: 340
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 329
Number of HSP's gapped (non-prelim): 14
length of query: 70
length of database: 18,247,518
effective HSP length: 43
effective length of query: 27
effective length of database: 16,619,280
effective search space: 448720560
effective search space used: 448720560
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.