Search of human proteins with 169211944

Search of human proteins with 169211944

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169211944 PREDICTED: hypothetical protein [Homo sapiens]
         (123 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169211538 PREDICTED: hypothetical protein [Homo sapiens]           269   5e-73
gi|169211944 PREDICTED: hypothetical protein [Homo sapiens]           269   5e-73
gi|169210722 PREDICTED: hypothetical protein [Homo sapiens]           269   5e-73
gi|29789379 sphingomyelin synthase 1 [Homo sapiens]                    29   0.79 
gi|32526915 StAR-related lipid transfer protein 5 [Homo sapiens]       27   3.9  
gi|4758502 hyaluronan binding protein 2 preproprotein [Homo sapi...    26   8.7  
gi|222537759 plasminogen activator, urokinase isoform 2 [Homo sa...    26   8.7  
gi|4505863 plasminogen activator, urokinase isoform 1 preproprot...    26   8.7  
gi|149192845 ubiquitin specific protease 24 [Homo sapiens]             26   8.7  

>gi|169211538 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 123

 Score =  269 bits (687), Expect = 5e-73
 Identities = 123/123 (100%), Positives = 123/123 (100%)

Query: 1   MLLLPLGWDVAREHRNLPVNKENSVLYPWNHRGAGICFREGQPLASPCWEWSFWLLKKLV 60
           MLLLPLGWDVAREHRNLPVNKENSVLYPWNHRGAGICFREGQPLASPCWEWSFWLLKKLV
Sbjct: 1   MLLLPLGWDVAREHRNLPVNKENSVLYPWNHRGAGICFREGQPLASPCWEWSFWLLKKLV 60

Query: 61  TIGSLCALACLDVFCCSQVEKADFVAAYLLKTRMEWSYLLGTFLKRACVFWNQGLLMHEN 120
           TIGSLCALACLDVFCCSQVEKADFVAAYLLKTRMEWSYLLGTFLKRACVFWNQGLLMHEN
Sbjct: 61  TIGSLCALACLDVFCCSQVEKADFVAAYLLKTRMEWSYLLGTFLKRACVFWNQGLLMHEN 120

Query: 121 QGS 123
           QGS
Sbjct: 121 QGS 123


>gi|169211944 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 123

 Score =  269 bits (687), Expect = 5e-73
 Identities = 123/123 (100%), Positives = 123/123 (100%)

Query: 1   MLLLPLGWDVAREHRNLPVNKENSVLYPWNHRGAGICFREGQPLASPCWEWSFWLLKKLV 60
           MLLLPLGWDVAREHRNLPVNKENSVLYPWNHRGAGICFREGQPLASPCWEWSFWLLKKLV
Sbjct: 1   MLLLPLGWDVAREHRNLPVNKENSVLYPWNHRGAGICFREGQPLASPCWEWSFWLLKKLV 60

Query: 61  TIGSLCALACLDVFCCSQVEKADFVAAYLLKTRMEWSYLLGTFLKRACVFWNQGLLMHEN 120
           TIGSLCALACLDVFCCSQVEKADFVAAYLLKTRMEWSYLLGTFLKRACVFWNQGLLMHEN
Sbjct: 61  TIGSLCALACLDVFCCSQVEKADFVAAYLLKTRMEWSYLLGTFLKRACVFWNQGLLMHEN 120

Query: 121 QGS 123
           QGS
Sbjct: 121 QGS 123


>gi|169210722 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 123

 Score =  269 bits (687), Expect = 5e-73
 Identities = 123/123 (100%), Positives = 123/123 (100%)

Query: 1   MLLLPLGWDVAREHRNLPVNKENSVLYPWNHRGAGICFREGQPLASPCWEWSFWLLKKLV 60
           MLLLPLGWDVAREHRNLPVNKENSVLYPWNHRGAGICFREGQPLASPCWEWSFWLLKKLV
Sbjct: 1   MLLLPLGWDVAREHRNLPVNKENSVLYPWNHRGAGICFREGQPLASPCWEWSFWLLKKLV 60

Query: 61  TIGSLCALACLDVFCCSQVEKADFVAAYLLKTRMEWSYLLGTFLKRACVFWNQGLLMHEN 120
           TIGSLCALACLDVFCCSQVEKADFVAAYLLKTRMEWSYLLGTFLKRACVFWNQGLLMHEN
Sbjct: 61  TIGSLCALACLDVFCCSQVEKADFVAAYLLKTRMEWSYLLGTFLKRACVFWNQGLLMHEN 120

Query: 121 QGS 123
           QGS
Sbjct: 121 QGS 123


>gi|29789379 sphingomyelin synthase 1 [Homo sapiens]
          Length = 413

 Score = 29.3 bits (64), Expect = 0.79
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 6/48 (12%)

Query: 51  WSFWLLKKLVTIGSLCALACLDVFCCSQVEKADFVAAYLLKTRMEWSY 98
           W  W+   L  +G  C L   D +        D V AY + TR+ W Y
Sbjct: 306 WYHWICWLLSVVGIFCILLAHDHYT------VDVVVAYYITTRLFWWY 347


>gi|32526915 StAR-related lipid transfer protein 5 [Homo sapiens]
          Length = 213

 Score = 26.9 bits (58), Expect = 3.9
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 7  GWDVAREHRNLPVNKENSVLYPWN-HRGAGICF 38
          GW + RE   + V+   SV +P N +RG GI +
Sbjct: 26 GWKICREGNGVSVSWRPSVEFPGNLYRGEGIVY 58


>gi|4758502 hyaluronan binding protein 2 preproprotein [Homo
           sapiens]
          Length = 560

 Score = 25.8 bits (55), Expect = 8.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 102 TFLKRACVFWNQGLLMHEN 120
           T  + AC++WN  LL+ EN
Sbjct: 209 TVNQHACLYWNSHLLLQEN 227


>gi|222537759 plasminogen activator, urokinase isoform 2 [Homo
           sapiens]
          Length = 414

 Score = 25.8 bits (55), Expect = 8.7
 Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 6/28 (21%)

Query: 28  PW------NHRGAGICFREGQPLASPCW 49
           PW       HRG  + +  G  L SPCW
Sbjct: 174 PWFAAIYRRHRGGSVTYVCGGSLISPCW 201


>gi|4505863 plasminogen activator, urokinase isoform 1 preproprotein
           [Homo sapiens]
          Length = 431

 Score = 25.8 bits (55), Expect = 8.7
 Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 6/28 (21%)

Query: 28  PW------NHRGAGICFREGQPLASPCW 49
           PW       HRG  + +  G  L SPCW
Sbjct: 191 PWFAAIYRRHRGGSVTYVCGGSLISPCW 218


>gi|149192845 ubiquitin specific protease 24 [Homo sapiens]
          Length = 2460

 Score = 25.8 bits (55), Expect = 8.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 63   GSLCALACLDVFCCSQVEKADFVAAYLLKTRME 95
            GSL AL  + V+CC   E   F   + +K ++E
Sbjct: 2250 GSLLALIEMVVYCCFCNEHFSFTMLHFIKNQLE 2282


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.327    0.139    0.496 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,149,457
Number of Sequences: 37866
Number of extensions: 218307
Number of successful extensions: 438
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 433
Number of HSP's gapped (non-prelim): 9
length of query: 123
length of database: 18,247,518
effective HSP length: 89
effective length of query: 34
effective length of database: 14,877,444
effective search space: 505833096
effective search space used: 505833096
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.