Guide to the Human Genome
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Name: LOC100128672 Sequence: fasta or formatted (123aa) NCBI GI: 169211538
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {123aa} PREDICTED: hypothetical protein
alt mRNA {123aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3          9           2
 C cysteine            5.7          7           2
 D aspartate           2.4          3           1
 E glutamate           5.7          7           1
 F phenylalanine       4.9          6           1
 G glycine             6.5          8           1
 H histidine           2.4          3           1
 I isoleucine          1.6          2           1
 K lysine              4.9          6           2
 L leucine            16.3         20           3
 M methionine          2.4          3           1
 N asparagine          4.9          6           1
 P proline             4.1          5           1
 Q glutamine           3.3          4           1
 R arginine            4.9          6           1
 S serine              5.7          7           1
 T threonine           2.4          3           1
 V valine              6.5          8           1
 W tryptophan          5.7          7           1
 Y tyrosine            2.4          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100128672          1.000   PREDICTED: hypothetical protein 
LOC100128672          1.000   PREDICTED: hypothetical protein 
SGMS1                 0.016   sphingomyelin synthase 1 
STARD5                0.008   StAR-related lipid transfer protein 5 
HABP2                 0.004   hyaluronan binding protein 2 preproprotein 
PLAU                  0.004   plasminogen activator, urokinase isoform 2 
PLAU                  0.004   plasminogen activator, urokinase isoform 1 preproprot...
USP24                 0.004   ubiquitin specific protease 24 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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