Search of human proteins with 169205475

Search of human proteins with 169205475

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169205475 PREDICTED: similar to peroxiredoxin 6 [Homo
sapiens]
         (137 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169205475 PREDICTED: similar to peroxiredoxin 6 [Homo sapiens]     281   2e-76
gi|4758638 peroxiredoxin 6 [Homo sapiens]                             167   3e-42
gi|5802974 peroxiredoxin 3 isoform a precursor [Homo sapiens]          37   0.007
gi|32483377 peroxiredoxin 3 isoform b [Homo sapiens]                   37   0.007
gi|32455266 peroxiredoxin 1 [Homo sapiens]                             35   0.025
gi|32455264 peroxiredoxin 1 [Homo sapiens]                             35   0.025
gi|4505591 peroxiredoxin 1 [Homo sapiens]                              35   0.025
gi|239757765 PREDICTED: similar to thioredoxin peroxidase [Homo ...    35   0.025
gi|33188454 peroxiredoxin 2 isoform c [Homo sapiens]                   34   0.033
gi|32189392 peroxiredoxin 2 isoform a [Homo sapiens]                   34   0.033
gi|5453549 peroxiredoxin 4 [Homo sapiens]                              33   0.073
gi|21264363 mannan-binding lectin serine protease 2 isoform 1 pr...    29   1.1  
gi|23308579 prostaglandin-E synthase 3 [Homo sapiens]                  28   2.4  
gi|5032281 dystrophin Dp427c isoform [Homo sapiens]                    27   5.3  
gi|5032315 dystrophin Dp427p2 isoform [Homo sapiens]                   27   5.3  
gi|5032287 dystrophin Dp427p1 isoform [Homo sapiens]                   27   5.3  
gi|5032285 dystrophin Dp427l isoform [Homo sapiens]                    27   5.3  
gi|5032283 dystrophin Dp427m isoform [Homo sapiens]                    27   5.3  
gi|218082953 autophagy-related protein 13 isoform 1 [Homo sapiens]     26   9.0  
gi|74272287 matrix metalloproteinase 9 preproprotein [Homo sapiens]    26   9.0  

>gi|169205475 PREDICTED: similar to peroxiredoxin 6 [Homo sapiens]
          Length = 137

 Score =  281 bits (718), Expect = 2e-76
 Identities = 137/137 (100%), Positives = 137/137 (100%)

Query: 1   MSLLLPSTRLPTRRLIALLAVICSHDFLGDSCGILFSHPRDSKPVCTMELGRAAKLAPEF 60
           MSLLLPSTRLPTRRLIALLAVICSHDFLGDSCGILFSHPRDSKPVCTMELGRAAKLAPEF
Sbjct: 1   MSLLLPSTRLPTRRLIALLAVICSHDFLGDSCGILFSHPRDSKPVCTMELGRAAKLAPEF 60

Query: 61  TKSNVKLIALATDSAEDHLAWSKDINAYNSDERTEKCPFPNIDGKDQDLAVLLGMLDPPE 120
           TKSNVKLIALATDSAEDHLAWSKDINAYNSDERTEKCPFPNIDGKDQDLAVLLGMLDPPE
Sbjct: 61  TKSNVKLIALATDSAEDHLAWSKDINAYNSDERTEKCPFPNIDGKDQDLAVLLGMLDPPE 120

Query: 121 LEEKGMGVRAYGVYFCS 137
           LEEKGMGVRAYGVYFCS
Sbjct: 121 LEEKGMGVRAYGVYFCS 137


>gi|4758638 peroxiredoxin 6 [Homo sapiens]
          Length = 224

 Score =  167 bits (422), Expect = 3e-42
 Identities = 82/110 (74%), Positives = 91/110 (82%)

Query: 25  HDFLGDSCGILFSHPRDSKPVCTMELGRAAKLAPEFTKSNVKLIALATDSAEDHLAWSKD 84
           HDFLGDS GILFSHPRD  PVCT ELGRAAKLAPEF K NVKLIAL+ DS EDHLAWSKD
Sbjct: 26  HDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHLAWSKD 85

Query: 85  INAYNSDERTEKCPFPNIDGKDQDLAVLLGMLDPPELEEKGMGVRAYGVY 134
           INAYN +E TEK PFP ID ++++LA+LLGMLDP E +EKGM V A  V+
Sbjct: 86  INAYNCEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVF 135


>gi|5802974 peroxiredoxin 3 isoform a precursor [Homo sapiens]
          Length = 256

 Score = 36.6 bits (83), Expect = 0.007
 Identities = 18/48 (37%), Positives = 27/48 (56%)

Query: 34  ILFSHPRDSKPVCTMELGRAAKLAPEFTKSNVKLIALATDSAEDHLAW 81
           +LF +P D   VC  E+   +  A EF   N +++A++ DS   HLAW
Sbjct: 96  VLFFYPLDFTFVCPTEIVAFSDKANEFHDVNCEVVAVSVDSHFSHLAW 143


>gi|32483377 peroxiredoxin 3 isoform b [Homo sapiens]
          Length = 238

 Score = 36.6 bits (83), Expect = 0.007
 Identities = 18/48 (37%), Positives = 27/48 (56%)

Query: 34  ILFSHPRDSKPVCTMELGRAAKLAPEFTKSNVKLIALATDSAEDHLAW 81
           +LF +P D   VC  E+   +  A EF   N +++A++ DS   HLAW
Sbjct: 78  VLFFYPLDFTFVCPTEIVAFSDKANEFHDVNCEVVAVSVDSHFSHLAW 125


>gi|32455266 peroxiredoxin 1 [Homo sapiens]
          Length = 199

 Score = 34.7 bits (78), Expect = 0.025
 Identities = 18/48 (37%), Positives = 25/48 (52%)

Query: 34 ILFSHPRDSKPVCTMELGRAAKLAPEFTKSNVKLIALATDSAEDHLAW 81
          + F +P D   VC  E+   +  A EF K N ++I  + DS   HLAW
Sbjct: 40 VFFFYPLDFTFVCPTEIIAFSDRAEEFKKLNCQVIGASVDSHFCHLAW 87


>gi|32455264 peroxiredoxin 1 [Homo sapiens]
          Length = 199

 Score = 34.7 bits (78), Expect = 0.025
 Identities = 18/48 (37%), Positives = 25/48 (52%)

Query: 34 ILFSHPRDSKPVCTMELGRAAKLAPEFTKSNVKLIALATDSAEDHLAW 81
          + F +P D   VC  E+   +  A EF K N ++I  + DS   HLAW
Sbjct: 40 VFFFYPLDFTFVCPTEIIAFSDRAEEFKKLNCQVIGASVDSHFCHLAW 87


>gi|4505591 peroxiredoxin 1 [Homo sapiens]
          Length = 199

 Score = 34.7 bits (78), Expect = 0.025
 Identities = 18/48 (37%), Positives = 25/48 (52%)

Query: 34 ILFSHPRDSKPVCTMELGRAAKLAPEFTKSNVKLIALATDSAEDHLAW 81
          + F +P D   VC  E+   +  A EF K N ++I  + DS   HLAW
Sbjct: 40 VFFFYPLDFTFVCPTEIIAFSDRAEEFKKLNCQVIGASVDSHFCHLAW 87


>gi|239757765 PREDICTED: similar to thioredoxin peroxidase [Homo
           sapiens]
          Length = 233

 Score = 34.7 bits (78), Expect = 0.025
 Identities = 17/49 (34%), Positives = 24/49 (48%)

Query: 34  ILFSHPRDSKPVCTMELGRAAKLAPEFTKSNVKLIALATDSAEDHLAWS 82
           + F +P D   VC  E+        EF   N +++A + DS   HLAWS
Sbjct: 112 VFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWS 160


>gi|33188454 peroxiredoxin 2 isoform c [Homo sapiens]
          Length = 142

 Score = 34.3 bits (77), Expect = 0.033
 Identities = 16/48 (33%), Positives = 26/48 (54%)

Query: 34 ILFSHPRDSKPVCTMELGRAAKLAPEFTKSNVKLIALATDSAEDHLAW 81
          +LF +P D   VC  E+   +  A +F K   +++ ++ DS   HLAW
Sbjct: 39 VLFFYPLDFTFVCPTEIIAFSNRAEDFRKLGCEVLGVSVDSQFTHLAW 86


>gi|32189392 peroxiredoxin 2 isoform a [Homo sapiens]
          Length = 198

 Score = 34.3 bits (77), Expect = 0.033
 Identities = 16/48 (33%), Positives = 26/48 (54%)

Query: 34 ILFSHPRDSKPVCTMELGRAAKLAPEFTKSNVKLIALATDSAEDHLAW 81
          +LF +P D   VC  E+   +  A +F K   +++ ++ DS   HLAW
Sbjct: 39 VLFFYPLDFTFVCPTEIIAFSNRAEDFRKLGCEVLGVSVDSQFTHLAW 86


>gi|5453549 peroxiredoxin 4 [Homo sapiens]
          Length = 271

 Score = 33.1 bits (74), Expect = 0.073
 Identities = 16/48 (33%), Positives = 23/48 (47%)

Query: 34  ILFSHPRDSKPVCTMELGRAAKLAPEFTKSNVKLIALATDSAEDHLAW 81
           + F +P D   VC  E+        EF   N +++A + DS   HLAW
Sbjct: 112 VFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAW 159


>gi|21264363 mannan-binding lectin serine protease 2 isoform 1
           precursor [Homo sapiens]
          Length = 686

 Score = 29.3 bits (64), Expect = 1.1
 Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 15/79 (18%)

Query: 22  ICSHDFLGDSCGILFSHPRDSKPVCTMELGRAAKLAPEFTKSNVKLIALATDSAEDHLAW 81
           +C +DFL      + +   +  P C   L    +     TKSN   I   TD + DH  W
Sbjct: 240 LCPYDFLK-----IQTDREEHGPFCGKTLPHRIE-----TKSNTVTITFVTDESGDHTGW 289

Query: 82  SKDINAYNSDERTEKCPFP 100
                  +     + CP+P
Sbjct: 290 K-----IHYTSTAQPCPYP 303


>gi|23308579 prostaglandin-E synthase 3 [Homo sapiens]
          Length = 160

 Score = 28.1 bits (61), Expect = 2.4
 Identities = 20/78 (25%), Positives = 29/78 (37%), Gaps = 10/78 (12%)

Query: 41  DSKPVCTMELGRAAKLAPEFTKSNVKLIALATD----------SAEDHLAWSKDINAYNS 90
           D   +C +  G + +  P  TK   KL  L+ D          S ED   + +     N+
Sbjct: 70  DRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNFDRFSEMMNN 129

Query: 91  DERTEKCPFPNIDGKDQD 108
               E    P +DG D D
Sbjct: 130 MGGDEDVDLPEVDGADDD 147


>gi|5032281 dystrophin Dp427c isoform [Homo sapiens]
          Length = 3677

 Score = 26.9 bits (58), Expect = 5.3
 Identities = 17/87 (19%), Positives = 39/87 (44%), Gaps = 4/87 (4%)

Query: 45  VCTMELGRAAKLAPEFTKSNVKLIALATDSAEDHLAWSKDINAYNSDERTEKCPFPNIDG 104
           +C  E+ R + L P+  +  ++ IAL  +  +  +    D  A+ +     K  F ++  
Sbjct: 864 ICKDEVNRLSGLQPQIERLKIQSIAL-KEKGQGPMFLDADFVAFTNH---FKQVFSDVQA 919

Query: 105 KDQDLAVLLGMLDPPELEEKGMGVRAY 131
           ++++L  +   L P   +E    +R +
Sbjct: 920 REKELQTIFDTLPPMRYQETMSAIRTW 946


>gi|5032315 dystrophin Dp427p2 isoform [Homo sapiens]
          Length = 3562

 Score = 26.9 bits (58), Expect = 5.3
 Identities = 17/87 (19%), Positives = 39/87 (44%), Gaps = 4/87 (4%)

Query: 45  VCTMELGRAAKLAPEFTKSNVKLIALATDSAEDHLAWSKDINAYNSDERTEKCPFPNIDG 104
           +C  E+ R + L P+  +  ++ IAL  +  +  +    D  A+ +     K  F ++  
Sbjct: 749 ICKDEVNRLSGLQPQIERLKIQSIAL-KEKGQGPMFLDADFVAFTNH---FKQVFSDVQA 804

Query: 105 KDQDLAVLLGMLDPPELEEKGMGVRAY 131
           ++++L  +   L P   +E    +R +
Sbjct: 805 REKELQTIFDTLPPMRYQETMSAIRTW 831


>gi|5032287 dystrophin Dp427p1 isoform [Homo sapiens]
          Length = 3681

 Score = 26.9 bits (58), Expect = 5.3
 Identities = 17/87 (19%), Positives = 39/87 (44%), Gaps = 4/87 (4%)

Query: 45  VCTMELGRAAKLAPEFTKSNVKLIALATDSAEDHLAWSKDINAYNSDERTEKCPFPNIDG 104
           +C  E+ R + L P+  +  ++ IAL  +  +  +    D  A+ +     K  F ++  
Sbjct: 868 ICKDEVNRLSGLQPQIERLKIQSIAL-KEKGQGPMFLDADFVAFTNH---FKQVFSDVQA 923

Query: 105 KDQDLAVLLGMLDPPELEEKGMGVRAY 131
           ++++L  +   L P   +E    +R +
Sbjct: 924 REKELQTIFDTLPPMRYQETMSAIRTW 950


>gi|5032285 dystrophin Dp427l isoform [Homo sapiens]
          Length = 3562

 Score = 26.9 bits (58), Expect = 5.3
 Identities = 17/87 (19%), Positives = 39/87 (44%), Gaps = 4/87 (4%)

Query: 45  VCTMELGRAAKLAPEFTKSNVKLIALATDSAEDHLAWSKDINAYNSDERTEKCPFPNIDG 104
           +C  E+ R + L P+  +  ++ IAL  +  +  +    D  A+ +     K  F ++  
Sbjct: 749 ICKDEVNRLSGLQPQIERLKIQSIAL-KEKGQGPMFLDADFVAFTNH---FKQVFSDVQA 804

Query: 105 KDQDLAVLLGMLDPPELEEKGMGVRAY 131
           ++++L  +   L P   +E    +R +
Sbjct: 805 REKELQTIFDTLPPMRYQETMSAIRTW 831


>gi|5032283 dystrophin Dp427m isoform [Homo sapiens]
          Length = 3685

 Score = 26.9 bits (58), Expect = 5.3
 Identities = 17/87 (19%), Positives = 39/87 (44%), Gaps = 4/87 (4%)

Query: 45  VCTMELGRAAKLAPEFTKSNVKLIALATDSAEDHLAWSKDINAYNSDERTEKCPFPNIDG 104
           +C  E+ R + L P+  +  ++ IAL  +  +  +    D  A+ +     K  F ++  
Sbjct: 872 ICKDEVNRLSGLQPQIERLKIQSIAL-KEKGQGPMFLDADFVAFTNH---FKQVFSDVQA 927

Query: 105 KDQDLAVLLGMLDPPELEEKGMGVRAY 131
           ++++L  +   L P   +E    +R +
Sbjct: 928 REKELQTIFDTLPPMRYQETMSAIRTW 954


>gi|218082953 autophagy-related protein 13 isoform 1 [Homo sapiens]
          Length = 517

 Score = 26.2 bits (56), Expect = 9.0
 Identities = 12/54 (22%), Positives = 25/54 (46%)

Query: 23  CSHDFLGDSCGILFSHPRDSKPVCTMELGRAAKLAPEFTKSNVKLIALATDSAE 76
           C++   G+  G+++    DS+ VCT     +       ++ + +  AL   SA+
Sbjct: 229 CNYRTAGEDTGVIYPSVEDSQEVCTTSFSTSPPSQLSSSRLSYQPAALGVGSAD 282


>gi|74272287 matrix metalloproteinase 9 preproprotein [Homo sapiens]
          Length = 707

 Score = 26.2 bits (56), Expect = 9.0
 Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 7/44 (15%)

Query: 69  ALATDSAEDHLAWSKDINAYNSDERTEKCPFP-------NIDGK 105
           A  TD   D L W      Y++D+R   CP         N DGK
Sbjct: 243 ACTTDGRSDGLPWCSTTANYDTDDRFGFCPSERLYTQDGNADGK 286


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.137    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,664,803
Number of Sequences: 37866
Number of extensions: 235520
Number of successful extensions: 516
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 503
Number of HSP's gapped (non-prelim): 20
length of query: 137
length of database: 18,247,518
effective HSP length: 91
effective length of query: 46
effective length of database: 14,801,712
effective search space: 680878752
effective search space used: 680878752
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.