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Search of human proteins with 169205183
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169205183 PREDICTED: similar to hCG38149 [Homo sapiens]
(95 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169205183 PREDICTED: similar to hCG38149 [Homo sapiens] 191 1e-49
gi|239755748 PREDICTED: ovostatin [Homo sapiens] 190 2e-49
gi|239744557 PREDICTED: hypothetical protein LOC728715 [Homo sap... 190 2e-49
gi|239755754 PREDICTED: ovostatin 2 [Homo sapiens] 157 2e-39
gi|66932947 alpha-2-macroglobulin precursor [Homo sapiens] 78 2e-15
gi|162809334 pregnancy-zone protein [Homo sapiens] 77 2e-15
gi|74271845 alpha-2-macroglobulin-like 1 [Homo sapiens] 62 1e-10
gi|67190748 complement component 4A preproprotein [Homo sapiens] 50 4e-07
gi|178557739 complement component 4B preproprotein [Homo sapiens] 50 4e-07
gi|239758130 PREDICTED: similar to complement component 4B (Chil... 50 4e-07
gi|239740684 PREDICTED: similar to C4A protein isoform 1 [Homo s... 50 4e-07
gi|169204289 PREDICTED: ovostatin [Homo sapiens] 48 2e-06
gi|239744583 PREDICTED: ovostatin 2 [Homo sapiens] 47 3e-06
gi|118600977 C3 and PZP-like, alpha-2-macroglobulin domain conta... 46 7e-06
gi|115298678 complement component 3 precursor [Homo sapiens] 44 2e-05
gi|169214179 PREDICTED: similar to complement component 3 [Homo ... 44 2e-05
gi|239740686 PREDICTED: similar to C4A protein isoform 2 [Homo s... 38 0.002
gi|227430303 CD109 antigen isoform 3 precursor [Homo sapiens] 33 0.064
gi|227430301 CD109 antigen isoform 2 precursor [Homo sapiens] 33 0.064
gi|115529484 CD109 antigen isoform 1 precursor [Homo sapiens] 33 0.064
gi|125858485 hypothetical protein LOC80209 isoform 2 [Homo sapiens] 28 1.6
gi|125656155 hypothetical protein LOC80209 isoform 1 [Homo sapiens] 28 1.6
gi|24307969 cytoplasmic FMR1 interacting protein 1 isoform a [Ho... 27 4.6
gi|38016947 complement component 5 preproprotein [Homo sapiens] 27 4.6
gi|116805788 cytoplasmic FMR1 interacting protein 2 [Homo sapiens] 27 4.6
gi|82617634 cytoplasmic FMR1 interacting protein 2 [Homo sapiens] 27 4.6
gi|82617630 cytoplasmic FMR1 interacting protein 2 [Homo sapiens] 27 4.6
>gi|169205183 PREDICTED: similar to hCG38149 [Homo sapiens]
Length = 95
Score = 191 bits (485), Expect = 1e-49
Identities = 95/95 (100%), Positives = 95/95 (100%)
Query: 1 MVVIDVKMLSGFTPTMSSIEELENKGQVMKTEVKNDHVLFYLENGFGRADSFPFSVEQSN 60
MVVIDVKMLSGFTPTMSSIEELENKGQVMKTEVKNDHVLFYLENGFGRADSFPFSVEQSN
Sbjct: 1 MVVIDVKMLSGFTPTMSSIEELENKGQVMKTEVKNDHVLFYLENGFGRADSFPFSVEQSN 60
Query: 61 LVFNIQPAPAMVYDYYEKEEYALAFYNIDSSSVSQ 95
LVFNIQPAPAMVYDYYEKEEYALAFYNIDSSSVSQ
Sbjct: 61 LVFNIQPAPAMVYDYYEKEEYALAFYNIDSSSVSQ 95
>gi|239755748 PREDICTED: ovostatin [Homo sapiens]
Length = 257
Score = 190 bits (482), Expect = 2e-49
Identities = 94/95 (98%), Positives = 95/95 (100%)
Query: 1 MVVIDVKMLSGFTPTMSSIEELENKGQVMKTEVKNDHVLFYLENGFGRADSFPFSVEQSN 60
MVVIDVKMLSGFTPTMSSIEELENKGQVMKTEVKNDHVLFYLENGFGRADSFPFSVEQSN
Sbjct: 163 MVVIDVKMLSGFTPTMSSIEELENKGQVMKTEVKNDHVLFYLENGFGRADSFPFSVEQSN 222
Query: 61 LVFNIQPAPAMVYDYYEKEEYALAFYNIDSSSVSQ 95
LVFNIQPAPAMVYDYYEKEEYALAFYNIDSSSVS+
Sbjct: 223 LVFNIQPAPAMVYDYYEKEEYALAFYNIDSSSVSE 257
>gi|239744557 PREDICTED: hypothetical protein LOC728715 [Homo
sapiens]
Length = 95
Score = 190 bits (482), Expect = 2e-49
Identities = 94/95 (98%), Positives = 95/95 (100%)
Query: 1 MVVIDVKMLSGFTPTMSSIEELENKGQVMKTEVKNDHVLFYLENGFGRADSFPFSVEQSN 60
MVVIDVKMLSGFTPTMSSIEELENKGQVMKTEVKNDHVLFYLENGFGRADSFPFSVEQSN
Sbjct: 1 MVVIDVKMLSGFTPTMSSIEELENKGQVMKTEVKNDHVLFYLENGFGRADSFPFSVEQSN 60
Query: 61 LVFNIQPAPAMVYDYYEKEEYALAFYNIDSSSVSQ 95
LVFNIQPAPAMVYDYYEKEEYALAFYNIDSSSVS+
Sbjct: 61 LVFNIQPAPAMVYDYYEKEEYALAFYNIDSSSVSE 95
>gi|239755754 PREDICTED: ovostatin 2 [Homo sapiens]
Length = 164
Score = 157 bits (396), Expect = 2e-39
Identities = 77/94 (81%), Positives = 84/94 (89%)
Query: 2 VVIDVKMLSGFTPTMSSIEELENKGQVMKTEVKNDHVLFYLENGFGRADSFPFSVEQSNL 61
V + ++S P+++ +LENKGQVMKTEVKNDHVLFYLENGFGRADSFPFSVEQSNL
Sbjct: 71 VALSFFLISILYPSLTISSKLENKGQVMKTEVKNDHVLFYLENGFGRADSFPFSVEQSNL 130
Query: 62 VFNIQPAPAMVYDYYEKEEYALAFYNIDSSSVSQ 95
VFNIQPAPAMVYDYYEKEEYALAFYNIDSSSVSQ
Sbjct: 131 VFNIQPAPAMVYDYYEKEEYALAFYNIDSSSVSQ 164
>gi|66932947 alpha-2-macroglobulin precursor [Homo sapiens]
Length = 1474
Score = 77.8 bits (190), Expect = 2e-15
Identities = 39/91 (42%), Positives = 57/91 (62%)
Query: 1 MVVIDVKMLSGFTPTMSSIEELENKGQVMKTEVKNDHVLFYLENGFGRADSFPFSVEQSN 60
M ++DVKM+SGF P +++ LE V +TEV ++HVL YL+ + S F+V Q
Sbjct: 1378 MAIVDVKMVSGFIPLKPTVKMLERSNHVSRTEVSSNHVLIYLDKVSNQTLSLFFTVLQDV 1437
Query: 61 LVFNIQPAPAMVYDYYEKEEYALAFYNIDSS 91
V +++PA VYDYYE +E+A+A YN S
Sbjct: 1438 PVRDLKPAIVKVYDYYETDEFAIAEYNAPCS 1468
>gi|162809334 pregnancy-zone protein [Homo sapiens]
Length = 1482
Score = 77.4 bits (189), Expect = 2e-15
Identities = 39/86 (45%), Positives = 54/86 (62%)
Query: 1 MVVIDVKMLSGFTPTMSSIEELENKGQVMKTEVKNDHVLFYLENGFGRADSFPFSVEQSN 60
MV++DVKM+SGF P +++ LE V +TEV N+HVL Y+E + SF F V Q
Sbjct: 1384 MVIVDVKMVSGFIPLKPTVKMLERSSSVSRTEVSNNHVLIYVEQVTNQTLSFSFMVLQDI 1443
Query: 61 LVFNIQPAPAMVYDYYEKEEYALAFY 86
V +++PA VYDYYE +E +A Y
Sbjct: 1444 PVGDLKPAIVKVYDYYETDESVVAEY 1469
>gi|74271845 alpha-2-macroglobulin-like 1 [Homo sapiens]
Length = 1454
Score = 61.6 bits (148), Expect = 1e-10
Identities = 32/87 (36%), Positives = 49/87 (56%)
Query: 1 MVVIDVKMLSGFTPTMSSIEELENKGQVMKTEVKNDHVLFYLENGFGRADSFPFSVEQSN 60
M +++VKMLSGF+P + + L + V K E D + YL+ ++ F++ QS
Sbjct: 1364 MAIVEVKMLSGFSPMEGTNQLLLQQPLVKKVEFGTDTLNIYLDELIKNTQTYTFTISQSV 1423
Query: 61 LVFNIQPAPAMVYDYYEKEEYALAFYN 87
LV N++PA VYDYY +E A Y+
Sbjct: 1424 LVTNLKPATIKVYDYYLPDEQATIQYS 1450
>gi|67190748 complement component 4A preproprotein [Homo sapiens]
Length = 1744
Score = 50.1 bits (118), Expect = 4e-07
Identities = 31/94 (32%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 1 MVVIDVKMLSGFTPTMSSIEELENKGQ--VMKTEVKNDHVLFYLENGFGRADSFPFSVEQ 58
M + DV +LSGF + +E+L + V E + HVL Y ++ + F Q
Sbjct: 1483 MAIADVTLLSGFHALRADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFEAVQ 1542
Query: 59 SNLVFNIQPAPAMVYDYYEKEEYALAFYNIDSSS 92
V +QPA A +YDYY E FY S S
Sbjct: 1543 EVPVGLVQPASATLYDYYNPERRCSVFYGAPSKS 1576
>gi|178557739 complement component 4B preproprotein [Homo sapiens]
Length = 1744
Score = 50.1 bits (118), Expect = 4e-07
Identities = 31/94 (32%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 1 MVVIDVKMLSGFTPTMSSIEELENKGQ--VMKTEVKNDHVLFYLENGFGRADSFPFSVEQ 58
M + DV +LSGF + +E+L + V E + HVL Y ++ + F Q
Sbjct: 1483 MAIADVTLLSGFHALRADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFEAVQ 1542
Query: 59 SNLVFNIQPAPAMVYDYYEKEEYALAFYNIDSSS 92
V +QPA A +YDYY E FY S S
Sbjct: 1543 EVPVGLVQPASATLYDYYNPERRCSVFYGAPSKS 1576
>gi|239758130 PREDICTED: similar to complement component 4B (Childo
blood group), partial [Homo sapiens]
Length = 666
Score = 50.1 bits (118), Expect = 4e-07
Identities = 31/94 (32%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 1 MVVIDVKMLSGFTPTMSSIEELENKGQ--VMKTEVKNDHVLFYLENGFGRADSFPFSVEQ 58
M + DV +LSGF + +E+L + V E + HVL Y ++ + F Q
Sbjct: 405 MAIADVTLLSGFHALRADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFEAVQ 464
Query: 59 SNLVFNIQPAPAMVYDYYEKEEYALAFYNIDSSS 92
V +QPA A +YDYY E FY S S
Sbjct: 465 EVPVGLVQPASATLYDYYNPERRCSVFYGAPSKS 498
>gi|239740684 PREDICTED: similar to C4A protein isoform 1 [Homo
sapiens]
Length = 1744
Score = 50.1 bits (118), Expect = 4e-07
Identities = 31/94 (32%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 1 MVVIDVKMLSGFTPTMSSIEELENKGQ--VMKTEVKNDHVLFYLENGFGRADSFPFSVEQ 58
M + DV +LSGF + +E+L + V E + HVL Y ++ + F Q
Sbjct: 1483 MAIADVTLLSGFHALRADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFEAVQ 1542
Query: 59 SNLVFNIQPAPAMVYDYYEKEEYALAFYNIDSSS 92
V +QPA A +YDYY E FY S S
Sbjct: 1543 EVPVGLVQPASATLYDYYNPERRCSVFYGAPSKS 1576
>gi|169204289 PREDICTED: ovostatin [Homo sapiens]
Length = 1353
Score = 47.8 bits (112), Expect = 2e-06
Identities = 22/30 (73%), Positives = 26/30 (86%)
Query: 1 MVVIDVKMLSGFTPTMSSIEELENKGQVMK 30
MVVIDVKMLSGFTPTMSSIEE+ N+ + +
Sbjct: 1305 MVVIDVKMLSGFTPTMSSIEEVNNRSLIFQ 1334
>gi|239744583 PREDICTED: ovostatin 2 [Homo sapiens]
Length = 1394
Score = 47.4 bits (111), Expect = 3e-06
Identities = 22/28 (78%), Positives = 25/28 (89%)
Query: 1 MVVIDVKMLSGFTPTMSSIEELENKGQV 28
MVVIDVKMLSGFTPTMSSIEE+ N+ +
Sbjct: 1346 MVVIDVKMLSGFTPTMSSIEEVNNRSLI 1373
>gi|118600977 C3 and PZP-like, alpha-2-macroglobulin domain containing
8 [Homo sapiens]
Length = 1932
Score = 45.8 bits (107), Expect = 7e-06
Identities = 34/95 (35%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 1 MVVIDVKMLSGFTPTMSSIEELE-NKGQVMKT-EVKNDHVLFYLENGFGRA-DSFPFSVE 57
M V++V +LSGF + S+E+L +K MK EV VLFY + R F
Sbjct: 1618 MAVLEVPLLSGFRADIESLEQLLLDKHMGMKRYEVAGRRVLFYFDEIPSRCLTCVRFRAL 1677
Query: 58 QSNLVFNIQPAPAMVYDYYEKEEYALAFYNIDSSS 92
+ +V P VYDYYE A FYN+ + S
Sbjct: 1678 RECVVGRTSALPVSVYDYYEPAFEATRFYNVSTHS 1712
>gi|115298678 complement component 3 precursor [Homo sapiens]
Length = 1663
Score = 44.3 bits (103), Expect = 2e-05
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 8/95 (8%)
Query: 1 MVVIDVKMLSGFTPTMSSIEELEN-------KGQVMKTEVKNDHVLFYLEN-GFGRADSF 52
M ++D+ M++GF P +++L N K ++ K + ++ YL+ D
Sbjct: 1400 MSILDISMMTGFAPDTDDLKQLANGVDRYISKYELDKAFSDRNTLIIYLDKVSHSEDDCL 1459
Query: 53 PFSVEQSNLVFNIQPAPAMVYDYYEKEEYALAFYN 87
F V Q V IQP VY YY EE FY+
Sbjct: 1460 AFKVHQYFNVELIQPGAVKVYAYYNLEESCTRFYH 1494
>gi|169214179 PREDICTED: similar to complement component 3 [Homo
sapiens]
Length = 390
Score = 44.3 bits (103), Expect = 2e-05
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 8/95 (8%)
Query: 1 MVVIDVKMLSGFTPTMSSIEELEN-------KGQVMKTEVKNDHVLFYLEN-GFGRADSF 52
M ++D+ M++GF P +++L N K ++ K + ++ YL+ D
Sbjct: 127 MSILDISMMTGFAPDTDDLKQLANGVDRYISKYELDKAFSDRNTLIIYLDKVSHSEDDCL 186
Query: 53 PFSVEQSNLVFNIQPAPAMVYDYYEKEEYALAFYN 87
F V Q V IQP VY YY EE FY+
Sbjct: 187 AFKVHQYFNVELIQPGAVKVYAYYNLEESCTRFYH 221
>gi|239740686 PREDICTED: similar to C4A protein isoform 2 [Homo
sapiens]
Length = 1698
Score = 38.1 bits (87), Expect = 0.002
Identities = 21/61 (34%), Positives = 27/61 (44%)
Query: 32 EVKNDHVLFYLENGFGRADSFPFSVEQSNLVFNIQPAPAMVYDYYEKEEYALAFYNIDSS 91
E + HVL Y ++ + F Q V +QPA A +YDYY E FY S
Sbjct: 1470 ETEGPHVLLYFDSVPTSRECVGFEAVQEVPVGLVQPASATLYDYYNPERRCSVFYGAPSK 1529
Query: 92 S 92
S
Sbjct: 1530 S 1530
>gi|227430303 CD109 antigen isoform 3 precursor [Homo sapiens]
Length = 1368
Score = 32.7 bits (73), Expect = 0.064
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Query: 1 MVVIDVKMLSGFTPTMSSIEELENKGQVMKTEVKNDHVLFYLENGFGRADSFPFSVEQSN 60
M +++V +LSGF +I E V K E + + YL++ ++
Sbjct: 1236 MALMEVNLLSGFMVPSEAISLSET---VKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNF 1292
Query: 61 LVFNIQPAPAMVYDYYEKEEYALAFYN 87
V N Q A + DYYE A+ YN
Sbjct: 1293 KVSNTQDASVSIVDYYEPRRQAVRSYN 1319
>gi|227430301 CD109 antigen isoform 2 precursor [Homo sapiens]
Length = 1428
Score = 32.7 bits (73), Expect = 0.064
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Query: 1 MVVIDVKMLSGFTPTMSSIEELENKGQVMKTEVKNDHVLFYLENGFGRADSFPFSVEQSN 60
M +++V +LSGF +I E V K E + + YL++ ++
Sbjct: 1296 MALMEVNLLSGFMVPSEAISLSET---VKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNF 1352
Query: 61 LVFNIQPAPAMVYDYYEKEEYALAFYN 87
V N Q A + DYYE A+ YN
Sbjct: 1353 KVSNTQDASVSIVDYYEPRRQAVRSYN 1379
>gi|115529484 CD109 antigen isoform 1 precursor [Homo sapiens]
Length = 1445
Score = 32.7 bits (73), Expect = 0.064
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Query: 1 MVVIDVKMLSGFTPTMSSIEELENKGQVMKTEVKNDHVLFYLENGFGRADSFPFSVEQSN 60
M +++V +LSGF +I E V K E + + YL++ ++
Sbjct: 1313 MALMEVNLLSGFMVPSEAISLSET---VKKVEYDHGKLNLYLDSVNETQFCVNIPAVRNF 1369
Query: 61 LVFNIQPAPAMVYDYYEKEEYALAFYN 87
V N Q A + DYYE A+ YN
Sbjct: 1370 KVSNTQDASVSIVDYYEPRRQAVRSYN 1396
>gi|125858485 hypothetical protein LOC80209 isoform 2 [Homo sapiens]
Length = 922
Score = 28.1 bits (61), Expect = 1.6
Identities = 14/55 (25%), Positives = 26/55 (47%)
Query: 14 PTMSSIEELENKGQVMKTEVKNDHVLFYLENGFGRADSFPFSVEQSNLVFNIQPA 68
P+ SS++EL++ ++ H LE+ + D FP F++QP+
Sbjct: 861 PSQSSLQELQHNAAAQSALLQQVHSASALESYPAQPDGFPSYPSAPGTPFSLQPS 915
>gi|125656155 hypothetical protein LOC80209 isoform 1 [Homo sapiens]
Length = 944
Score = 28.1 bits (61), Expect = 1.6
Identities = 14/55 (25%), Positives = 26/55 (47%)
Query: 14 PTMSSIEELENKGQVMKTEVKNDHVLFYLENGFGRADSFPFSVEQSNLVFNIQPA 68
P+ SS++EL++ ++ H LE+ + D FP F++QP+
Sbjct: 883 PSQSSLQELQHNAAAQSALLQQVHSASALESYPAQPDGFPSYPSAPGTPFSLQPS 937
>gi|24307969 cytoplasmic FMR1 interacting protein 1 isoform a [Homo
sapiens]
Length = 1253
Score = 26.6 bits (57), Expect = 4.6
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 9 LSGFTPTMSSIEELENKGQVMKTEVKNDHVLFYLENGFGRADSFPFSVEQS 59
L F + ++EL+N MK VKNDH + F R + P S+++S
Sbjct: 161 LGKFINMFAVLDELKN----MKCSVKNDHSAYKRAAQFLRKMADPQSIQES 207
>gi|38016947 complement component 5 preproprotein [Homo sapiens]
Length = 1676
Score = 26.6 bits (57), Expect = 4.6
Identities = 20/97 (20%), Positives = 44/97 (45%), Gaps = 5/97 (5%)
Query: 3 VIDVKMLSGFTPTMSSIEELENKGQVMKTE--VKNDHVLFYLENGFGRADSF--PFSVEQ 58
V+D+ + +G + ++ L + T+ +K+ HV+ L N +D F + +
Sbjct: 1423 VMDISLPTGISANEEDLKALVEGVDQLFTDYQIKDGHVILQL-NSIPSSDFLCVRFRIFE 1481
Query: 59 SNLVFNIQPAPAMVYDYYEKEEYALAFYNIDSSSVSQ 95
V + PA VY+Y+ ++ FY+ + + +
Sbjct: 1482 LFEVGFLSPATFTVYEYHRPDKQCTMFYSTSNIKIQK 1518
>gi|116805788 cytoplasmic FMR1 interacting protein 2 [Homo sapiens]
Length = 1253
Score = 26.6 bits (57), Expect = 4.6
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 9 LSGFTPTMSSIEELENKGQVMKTEVKNDHVLFYLENGFGRADSFPFSVEQS 59
L F + ++EL+N MK VKNDH + F R + P S+++S
Sbjct: 161 LGKFINMFAVLDELKN----MKCSVKNDHSAYKRAAQFLRKMADPQSIQES 207
>gi|82617634 cytoplasmic FMR1 interacting protein 2 [Homo sapiens]
Length = 1253
Score = 26.6 bits (57), Expect = 4.6
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 9 LSGFTPTMSSIEELENKGQVMKTEVKNDHVLFYLENGFGRADSFPFSVEQS 59
L F + ++EL+N MK VKNDH + F R + P S+++S
Sbjct: 161 LGKFINMFAVLDELKN----MKCSVKNDHSAYKRAAQFLRKMADPQSIQES 207
>gi|82617630 cytoplasmic FMR1 interacting protein 2 [Homo sapiens]
Length = 1253
Score = 26.6 bits (57), Expect = 4.6
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 9 LSGFTPTMSSIEELENKGQVMKTEVKNDHVLFYLENGFGRADSFPFSVEQS 59
L F + ++EL+N MK VKNDH + F R + P S+++S
Sbjct: 161 LGKFINMFAVLDELKN----MKCSVKNDHSAYKRAAQFLRKMADPQSIQES 207
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.132 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,252,860
Number of Sequences: 37866
Number of extensions: 115272
Number of successful extensions: 251
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 225
Number of HSP's gapped (non-prelim): 31
length of query: 95
length of database: 18,247,518
effective HSP length: 66
effective length of query: 29
effective length of database: 15,748,362
effective search space: 456702498
effective search space used: 456702498
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.