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Search of human proteins with 169180128
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169180128 PREDICTED: Transmembrane protein ENSP00000340100
[Homo sapiens]
(208 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169183778 PREDICTED: Transmembrane protein ENSP00000340100 [H... 433 e-122
gi|169179724 PREDICTED: Transmembrane protein ENSP00000340100 [H... 433 e-122
gi|169180128 PREDICTED: Transmembrane protein ENSP00000340100 [H... 433 e-122
gi|213512168 hypothetical protein LOC259308 [Homo sapiens] 180 9e-46
gi|223633944 hypothetical protein LOC389762 [Homo sapiens] 41 6e-04
gi|223671858 hypothetical protein LOC389761 [Homo sapiens] 41 6e-04
gi|48717285 hypothetical protein LOC389763 [Homo sapiens] 38 0.005
gi|70980547 FYVE-finger-containing Rab5 effector protein rabenos... 37 0.012
gi|102467235 inner centromere protein antigens 135/155kDa isofor... 29 2.5
gi|102467242 inner centromere protein antigens 135/155kDa isofor... 29 2.5
gi|88501738 TRIO and F-actin binding protein isoform 6 [Homo sap... 28 4.2
gi|4557841 recombination activating gene 1 [Homo sapiens] 28 5.5
gi|156766068 CDC42 binding protein kinase gamma (DMPK-like) [Hom... 27 9.4
>gi|169183778 PREDICTED: Transmembrane protein ENSP00000340100 [Homo
sapiens]
Length = 208
Score = 433 bits (1113), Expect = e-122
Identities = 208/208 (100%), Positives = 208/208 (100%)
Query: 1 MLSPTFVLWDVGYPLYTYGSICIIALIIWQVKKSCQKLSLVPNRSCCRCHRRVQQKSGDR 60
MLSPTFVLWDVGYPLYTYGSICIIALIIWQVKKSCQKLSLVPNRSCCRCHRRVQQKSGDR
Sbjct: 1 MLSPTFVLWDVGYPLYTYGSICIIALIIWQVKKSCQKLSLVPNRSCCRCHRRVQQKSGDR 60
Query: 61 TSRARRTSQEEAEKLWKLLFLMKSQGWLPQEGSVRRILCADPCCQICNVMALEIKQLLAA 120
TSRARRTSQEEAEKLWKLLFLMKSQGWLPQEGSVRRILCADPCCQICNVMALEIKQLLAA
Sbjct: 61 TSRARRTSQEEAEKLWKLLFLMKSQGWLPQEGSVRRILCADPCCQICNVMALEIKQLLAA 120
Query: 121 PEVGLDNKMKLFLHWINPEMKDRRHEESILLSKAETVTQDRTKNIEKSPTVTKDHVWGAT 180
PEVGLDNKMKLFLHWINPEMKDRRHEESILLSKAETVTQDRTKNIEKSPTVTKDHVWGAT
Sbjct: 121 PEVGLDNKMKLFLHWINPEMKDRRHEESILLSKAETVTQDRTKNIEKSPTVTKDHVWGAT 180
Query: 181 TQKTTEDPEAQPPSTEEEGLIFCDAPSA 208
TQKTTEDPEAQPPSTEEEGLIFCDAPSA
Sbjct: 181 TQKTTEDPEAQPPSTEEEGLIFCDAPSA 208
>gi|169179724 PREDICTED: Transmembrane protein ENSP00000340100 [Homo
sapiens]
Length = 208
Score = 433 bits (1113), Expect = e-122
Identities = 208/208 (100%), Positives = 208/208 (100%)
Query: 1 MLSPTFVLWDVGYPLYTYGSICIIALIIWQVKKSCQKLSLVPNRSCCRCHRRVQQKSGDR 60
MLSPTFVLWDVGYPLYTYGSICIIALIIWQVKKSCQKLSLVPNRSCCRCHRRVQQKSGDR
Sbjct: 1 MLSPTFVLWDVGYPLYTYGSICIIALIIWQVKKSCQKLSLVPNRSCCRCHRRVQQKSGDR 60
Query: 61 TSRARRTSQEEAEKLWKLLFLMKSQGWLPQEGSVRRILCADPCCQICNVMALEIKQLLAA 120
TSRARRTSQEEAEKLWKLLFLMKSQGWLPQEGSVRRILCADPCCQICNVMALEIKQLLAA
Sbjct: 61 TSRARRTSQEEAEKLWKLLFLMKSQGWLPQEGSVRRILCADPCCQICNVMALEIKQLLAA 120
Query: 121 PEVGLDNKMKLFLHWINPEMKDRRHEESILLSKAETVTQDRTKNIEKSPTVTKDHVWGAT 180
PEVGLDNKMKLFLHWINPEMKDRRHEESILLSKAETVTQDRTKNIEKSPTVTKDHVWGAT
Sbjct: 121 PEVGLDNKMKLFLHWINPEMKDRRHEESILLSKAETVTQDRTKNIEKSPTVTKDHVWGAT 180
Query: 181 TQKTTEDPEAQPPSTEEEGLIFCDAPSA 208
TQKTTEDPEAQPPSTEEEGLIFCDAPSA
Sbjct: 181 TQKTTEDPEAQPPSTEEEGLIFCDAPSA 208
>gi|169180128 PREDICTED: Transmembrane protein ENSP00000340100 [Homo
sapiens]
Length = 208
Score = 433 bits (1113), Expect = e-122
Identities = 208/208 (100%), Positives = 208/208 (100%)
Query: 1 MLSPTFVLWDVGYPLYTYGSICIIALIIWQVKKSCQKLSLVPNRSCCRCHRRVQQKSGDR 60
MLSPTFVLWDVGYPLYTYGSICIIALIIWQVKKSCQKLSLVPNRSCCRCHRRVQQKSGDR
Sbjct: 1 MLSPTFVLWDVGYPLYTYGSICIIALIIWQVKKSCQKLSLVPNRSCCRCHRRVQQKSGDR 60
Query: 61 TSRARRTSQEEAEKLWKLLFLMKSQGWLPQEGSVRRILCADPCCQICNVMALEIKQLLAA 120
TSRARRTSQEEAEKLWKLLFLMKSQGWLPQEGSVRRILCADPCCQICNVMALEIKQLLAA
Sbjct: 61 TSRARRTSQEEAEKLWKLLFLMKSQGWLPQEGSVRRILCADPCCQICNVMALEIKQLLAA 120
Query: 121 PEVGLDNKMKLFLHWINPEMKDRRHEESILLSKAETVTQDRTKNIEKSPTVTKDHVWGAT 180
PEVGLDNKMKLFLHWINPEMKDRRHEESILLSKAETVTQDRTKNIEKSPTVTKDHVWGAT
Sbjct: 121 PEVGLDNKMKLFLHWINPEMKDRRHEESILLSKAETVTQDRTKNIEKSPTVTKDHVWGAT 180
Query: 181 TQKTTEDPEAQPPSTEEEGLIFCDAPSA 208
TQKTTEDPEAQPPSTEEEGLIFCDAPSA
Sbjct: 181 TQKTTEDPEAQPPSTEEEGLIFCDAPSA 208
>gi|213512168 hypothetical protein LOC259308 [Homo sapiens]
Length = 1335
Score = 180 bits (456), Expect = 9e-46
Identities = 89/133 (66%), Positives = 107/133 (80%), Gaps = 4/133 (3%)
Query: 1 MLSPTFVLWDVGYPLYTYGSICIIALIIWQVKKSCQKLSLVPNRSCCRCHRRVQQKSGDR 60
MLSPTFVLW+VGYPLY YGSI I+ +IIWQVK+S +LS P RSCCRCH++V+Q++ D
Sbjct: 1 MLSPTFVLWEVGYPLYIYGSIFIVIVIIWQVKRSHHELSSEPKRSCCRCHQKVRQRARDA 60
Query: 61 TSRARRTSQEEAEKLWKLLFLMKSQGWLPQEGSVRRILCADPCCQICNVMALEIKQLLAA 120
S ARR S+EEAEK KLL ++KSQGWLP E SVRRILCADPCCQICN +ALEI+QLL
Sbjct: 61 ASTARRRSREEAEKPQKLLSIIKSQGWLPLERSVRRILCADPCCQICNSVALEIQQLL-- 118
Query: 121 PEVGLDNKMKLFL 133
VG +N++ L L
Sbjct: 119 --VGENNQISLTL 129
Score = 50.4 bits (119), Expect = 1e-06
Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 2/101 (1%)
Query: 109 VMALEIKQLLAAPEVGLDNKMKLFLHWINPEMKDRRHEESILLSKAETVTQDRTKNIEKS 168
VM + ++ + E NK+K FL INP+ K + HE+S + S A V + R +N+ KS
Sbjct: 1195 VMPVHAQKKPSLTESSFRNKIKCFLQHINPKTKGKGHEDS-MFSAAAKVAKTRKENVAKS 1253
Query: 169 PTVTKDHVWGATTQKTTEDPEAQP-PSTEEEGLIFCDAPSA 208
K V + T+K T +AQ P+ + G F D P +
Sbjct: 1254 LAPAKSPVGRSKTEKPTGCSKAQSRPAQKLVGPAFLDGPQS 1294
>gi|223633944 hypothetical protein LOC389762 [Homo sapiens]
Length = 917
Score = 41.2 bits (95), Expect = 6e-04
Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 9/127 (7%)
Query: 2 LSPTFVLWDVGYPLYTYGSICIIALIIWQVKKSCQKLSLVPNRSCCRCHRRVQQKSGDRT 61
LSP D+ + + L ++ + + N + R ++K T
Sbjct: 16 LSPDSHCLDIDLNFICLSGLGLFILYLFYMVLTLYSSPTEKNNDTQKHQGRARRKRKSVT 75
Query: 62 SRARRTSQEEAEKLWKLLFLMKSQGW------LPQEGSV---RRILCADPCCQICNVMAL 112
+ R++ Q+EAE+ KL +KS G L Q RR+LC DP C++CN
Sbjct: 76 FKDRKSLQKEAEEERKLHSFLKSFGPPVSCSPLGQHHDTTLFRRLLCPDPVCRVCNRATA 135
Query: 113 EIKQLLA 119
+I++LL+
Sbjct: 136 DIQRLLS 142
>gi|223671858 hypothetical protein LOC389761 [Homo sapiens]
Length = 917
Score = 41.2 bits (95), Expect = 6e-04
Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 9/127 (7%)
Query: 2 LSPTFVLWDVGYPLYTYGSICIIALIIWQVKKSCQKLSLVPNRSCCRCHRRVQQKSGDRT 61
LSP D+ + + L ++ + + N + R ++K T
Sbjct: 16 LSPDSHCLDIDLNFICLSGLGLFILYLFYMVLTLYSSPTEKNNDTQKHQGRARRKRKSVT 75
Query: 62 SRARRTSQEEAEKLWKLLFLMKSQGW------LPQEGSV---RRILCADPCCQICNVMAL 112
+ R++ Q+EAE+ KL +KS G L Q RR+LC DP C++CN
Sbjct: 76 FKDRKSLQKEAEEERKLHSFLKSFGPPVSCSPLGQHHDTTLFRRLLCPDPVCRVCNRATA 135
Query: 113 EIKQLLA 119
+I++LL+
Sbjct: 136 DIQRLLS 142
>gi|48717285 hypothetical protein LOC389763 [Homo sapiens]
Length = 1576
Score = 38.1 bits (87), Expect = 0.005
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 9/63 (14%)
Query: 66 RTSQEEAEKLWKLLFLMKS---------QGWLPQEGSVRRILCADPCCQICNVMALEIKQ 116
++ Q E E+ KLL L+KS +G RR+LC DP C++C +I+Q
Sbjct: 83 KSFQREEEEERKLLSLLKSFGPPVSCSPRGQHHDTNHFRRLLCPDPVCRVCKRATADIQQ 142
Query: 117 LLA 119
LL+
Sbjct: 143 LLS 145
>gi|70980547 FYVE-finger-containing Rab5 effector protein
rabenosyn-5 [Homo sapiens]
Length = 784
Score = 37.0 bits (84), Expect = 0.012
Identities = 30/129 (23%), Positives = 58/129 (44%), Gaps = 2/129 (1%)
Query: 32 KKSCQKLSLVPNRSCCRCHRRVQQKSGDRTSRARRTSQEEAEKLWKLLFLMKSQGWLPQE 91
K+ ++ V ++ RR++++ SRA + E A L K++GWLP
Sbjct: 390 KEEMERKRAVERQAALESQRRLEERQSGLASRA--ANGEVASLRRGPAPLRKAEGWLPLS 447
Query: 92 GSVRRILCADPCCQICNVMALEIKQLLAAPEVGLDNKMKLFLHWINPEMKDRRHEESILL 151
G + +DP Q + + I+Q AA + ++ L + E ++ E++I L
Sbjct: 448 GGQGQSEDSDPLLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQQTEKAIEL 507
Query: 152 SKAETVTQD 160
S+ + +D
Sbjct: 508 SRRQAEEED 516
>gi|102467235 inner centromere protein antigens 135/155kDa isoform 1
[Homo sapiens]
Length = 918
Score = 29.3 bits (64), Expect = 2.5
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 133 LHWINPEMKDRRHEESILLSKAETVTQDRTKNIEKSPTVTKDHVWGATTQKTTEDPEAQP 192
L W+ E ++RRH+E LL K + Q+R + ++ + + Q+ E +
Sbjct: 648 LRWLQQEEEERRHQE--LLQKKKEEEQERLRKAAEAKRLAEQREQERREQERREQERREQ 705
Query: 193 PSTEEE 198
E+E
Sbjct: 706 ERREQE 711
>gi|102467242 inner centromere protein antigens 135/155kDa isoform 2
[Homo sapiens]
Length = 914
Score = 29.3 bits (64), Expect = 2.5
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 133 LHWINPEMKDRRHEESILLSKAETVTQDRTKNIEKSPTVTKDHVWGATTQKTTEDPEAQP 192
L W+ E ++RRH+E LL K + Q+R + ++ + + Q+ E +
Sbjct: 644 LRWLQQEEEERRHQE--LLQKKKEEEQERLRKAAEAKRLAEQREQERREQERREQERREQ 701
Query: 193 PSTEEE 198
E+E
Sbjct: 702 ERREQE 707
>gi|88501738 TRIO and F-actin binding protein isoform 6 [Homo
sapiens]
Length = 2365
Score = 28.5 bits (62), Expect = 4.2
Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 52 RVQQKSGDRTSRARRTSQEEAEKLWKLLFLMKSQGWLPQEGSVRRILCADP 102
R Q G RTS R+ Q E W + L +QG PQ S R DP
Sbjct: 912 RPTQSDGPRTSSPSRSKQSEVP--WASIALRPTQGDRPQTSSPSRPAQHDP 960
>gi|4557841 recombination activating gene 1 [Homo sapiens]
Length = 1043
Score = 28.1 bits (61), Expect = 5.5
Identities = 14/52 (26%), Positives = 23/52 (44%)
Query: 102 PCCQICNVMALEIKQLLAAPEVGLDNKMKLFLHWINPEMKDRRHEESILLSK 153
P C ICN +K+ P + L K+K L + +R ++ + SK
Sbjct: 209 PSCDICNTARRGLKRKSLQPNLQLSKKLKTVLDQARQARQRKRRAQARISSK 260
>gi|156766068 CDC42 binding protein kinase gamma (DMPK-like) [Homo
sapiens]
Length = 1551
Score = 27.3 bits (59), Expect = 9.4
Identities = 13/47 (27%), Positives = 20/47 (42%)
Query: 133 LHWINPEMKDRRHEESILLSKAETVTQDRTKNIEKSPTVTKDHVWGA 179
L W+N E R + +++ AE + R + P DH W A
Sbjct: 685 LSWVNDEKVSRGYLQALATKMAEELESLRNVGTQTLPARPLDHQWKA 731
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.132 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,524,815
Number of Sequences: 37866
Number of extensions: 349347
Number of successful extensions: 1179
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1166
Number of HSP's gapped (non-prelim): 14
length of query: 208
length of database: 18,247,518
effective HSP length: 98
effective length of query: 110
effective length of database: 14,536,650
effective search space: 1599031500
effective search space used: 1599031500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.