Guide to the Human Genome
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Name: LOC100129969 Sequence: fasta or formatted (208aa) NCBI GI: 169180128
Description:

PREDICTED: Transmembrane protein ENSP00000340100

Not currently referenced in the text

Other entries for this name:
alt mRNA {208aa} PREDICTED: Transmembrane protein ENSP00000340100
alt mRNA {208aa} PREDICTED: Transmembrane protein ENSP00000340100
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         12           2
 C cysteine            4.8         10           2
 D aspartate           4.3          9           1
 E glutamate           7.7         16           3
 F phenylalanine       1.9          4           1
 G glycine             3.8          8           1
 H histidine           1.9          4           1
 I isoleucine          5.8         12           2
 K lysine              7.7         16           2
 L leucine            10.1         21           2
 M methionine          2.4          5           1
 N asparagine          2.4          5           1
 P proline             5.8         12           2
 Q glutamine           5.8         12           2
 R arginine            6.2         13           2
 S serine              7.2         15           1
 T threonine           6.7         14           2
 V valine              5.3         11           1
 W tryptophan          2.9          6           1
 Y tyrosine            1.4          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: Transmembrane protein ENSP00000340100 [H... 
LOC100129969          1.000   PREDICTED: Transmembrane protein ENSP00000340100 [H...
LOC100129969          1.000   PREDICTED: Transmembrane protein ENSP00000340100 [H...
C9orf144B             0.380   hypothetical protein LOC259308 
FLJ44082              0.039   hypothetical protein LOC389762 
FLJ43859              0.039   hypothetical protein LOC389761 
FLJ46321              0.032   hypothetical protein LOC389763 
ZFYVE20               0.029   FYVE-finger-containing Rab5 effector protein rabenos...
INCENP                0.010   inner centromere protein antigens 135/155kDa isofor...
INCENP                0.010   inner centromere protein antigens 135/155kDa isofor...
TRIOBP                0.007   TRIO and F-actin binding protein isoform 6 
RAG1                  0.007   recombination activating gene 1 
CDC42BPG              0.005   CDC42 binding protein kinase gamma (DMPK-like) [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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