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Search of human proteins with 169172908
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169172908 PREDICTED: similar to beta-defensin 130 [Homo
sapiens]
(79 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169172908 PREDICTED: similar to beta-defensin 130 [Homo sapiens] 172 7e-44
gi|83699414 beta-defensin 130 [Homo sapiens] 172 7e-44
gi|169202991 PREDICTED: similar to beta-defensin 130 [Homo sapiens] 164 2e-41
gi|169203490 PREDICTED: similar to beta-defensin 130 [Homo sapiens] 164 2e-41
gi|113422487 PREDICTED: similar to beta-defensin 130 [Homo sapiens] 164 2e-41
gi|239753810 PREDICTED: similar to beta-defensin 130 [Homo sapiens] 163 3e-41
gi|239748374 PREDICTED: hypothetical protein XP_002346650 [Homo ... 163 3e-41
gi|239742299 PREDICTED: hypothetical protein XP_002342487 [Homo ... 163 3e-41
gi|239742274 PREDICTED: hypothetical protein XP_002342470 [Homo ... 82 1e-16
gi|239743480 PREDICTED: hypothetical protein XP_002342858 [Homo ... 80 4e-16
gi|239744548 PREDICTED: hypothetical protein XP_002343194 [Homo ... 78 1e-15
gi|8923890 defensin, beta 103A precursor [Homo sapiens] 35 0.013
gi|125656159 beta-defensin 103B precursor [Homo sapiens] 35 0.013
gi|22748611 defensin, beta 106A precursor [Homo sapiens] 32 0.084
gi|103485143 defensin, beta 106B precursor [Homo sapiens] 32 0.084
gi|239754319 PREDICTED: defensin, beta 133 [Homo sapiens] 31 0.19
gi|239748864 PREDICTED: defensin, beta 133 [Homo sapiens] 31 0.19
gi|239742893 PREDICTED: beta-defensin 133 [Homo sapiens] 31 0.19
gi|110825974 ADAM metallopeptidase with thrombospondin type 1 mo... 28 1.6
gi|239757478 PREDICTED: defensin, beta 117 [Homo sapiens] 27 2.7
gi|239751980 PREDICTED: defensin, beta 117 [Homo sapiens] 27 2.7
gi|239746467 PREDICTED: defensin, beta 117 [Homo sapiens] 27 2.7
gi|46409558 beta-defensin 32 precursor [Homo sapiens] 27 3.5
gi|239741731 PREDICTED: hypothetical protein XP_002342307 [Homo ... 26 6.0
gi|24308169 dynein, axonemal, heavy chain 3 [Homo sapiens] 26 6.0
>gi|169172908 PREDICTED: similar to beta-defensin 130 [Homo
sapiens]
Length = 79
Score = 172 bits (435), Expect = 7e-44
Identities = 79/79 (100%), Positives = 79/79 (100%)
Query: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC 60
MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC
Sbjct: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC 60
Query: 61 RRWWILEPYPTPVPKGKSP 79
RRWWILEPYPTPVPKGKSP
Sbjct: 61 RRWWILEPYPTPVPKGKSP 79
>gi|83699414 beta-defensin 130 [Homo sapiens]
Length = 79
Score = 172 bits (435), Expect = 7e-44
Identities = 79/79 (100%), Positives = 79/79 (100%)
Query: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC 60
MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC
Sbjct: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC 60
Query: 61 RRWWILEPYPTPVPKGKSP 79
RRWWILEPYPTPVPKGKSP
Sbjct: 61 RRWWILEPYPTPVPKGKSP 79
>gi|169202991 PREDICTED: similar to beta-defensin 130 [Homo
sapiens]
Length = 78
Score = 164 bits (414), Expect = 2e-41
Identities = 78/79 (98%), Positives = 78/79 (98%), Gaps = 1/79 (1%)
Query: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC 60
MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKK C
Sbjct: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKK-C 59
Query: 61 RRWWILEPYPTPVPKGKSP 79
RRWWILEPYPTPVPKGKSP
Sbjct: 60 RRWWILEPYPTPVPKGKSP 78
>gi|169203490 PREDICTED: similar to beta-defensin 130 [Homo
sapiens]
Length = 78
Score = 164 bits (414), Expect = 2e-41
Identities = 78/79 (98%), Positives = 78/79 (98%), Gaps = 1/79 (1%)
Query: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC 60
MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKK C
Sbjct: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKK-C 59
Query: 61 RRWWILEPYPTPVPKGKSP 79
RRWWILEPYPTPVPKGKSP
Sbjct: 60 RRWWILEPYPTPVPKGKSP 78
>gi|113422487 PREDICTED: similar to beta-defensin 130 [Homo
sapiens]
Length = 78
Score = 164 bits (414), Expect = 2e-41
Identities = 78/79 (98%), Positives = 78/79 (98%), Gaps = 1/79 (1%)
Query: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC 60
MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKK C
Sbjct: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKK-C 59
Query: 61 RRWWILEPYPTPVPKGKSP 79
RRWWILEPYPTPVPKGKSP
Sbjct: 60 RRWWILEPYPTPVPKGKSP 78
>gi|239753810 PREDICTED: similar to beta-defensin 130 [Homo sapiens]
Length = 128
Score = 163 bits (412), Expect = 3e-41
Identities = 77/79 (97%), Positives = 77/79 (97%), Gaps = 1/79 (1%)
Query: 2 KLHSLISVLLLFVTLIPKGK-TGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC 60
KLHSLISVLLLFVTLIPK K TGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC
Sbjct: 50 KLHSLISVLLLFVTLIPKAKMTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC 109
Query: 61 RRWWILEPYPTPVPKGKSP 79
RRWWILEPYPTPVPKGKSP
Sbjct: 110 RRWWILEPYPTPVPKGKSP 128
>gi|239748374 PREDICTED: hypothetical protein XP_002346650 [Homo
sapiens]
Length = 128
Score = 163 bits (412), Expect = 3e-41
Identities = 77/79 (97%), Positives = 77/79 (97%), Gaps = 1/79 (1%)
Query: 2 KLHSLISVLLLFVTLIPKGK-TGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC 60
KLHSLISVLLLFVTLIPK K TGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC
Sbjct: 50 KLHSLISVLLLFVTLIPKAKMTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC 109
Query: 61 RRWWILEPYPTPVPKGKSP 79
RRWWILEPYPTPVPKGKSP
Sbjct: 110 RRWWILEPYPTPVPKGKSP 128
>gi|239742299 PREDICTED: hypothetical protein XP_002342487 [Homo
sapiens]
Length = 128
Score = 163 bits (412), Expect = 3e-41
Identities = 77/79 (97%), Positives = 77/79 (97%), Gaps = 1/79 (1%)
Query: 2 KLHSLISVLLLFVTLIPKGK-TGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC 60
KLHSLISVLLLFVTLIPK K TGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC
Sbjct: 50 KLHSLISVLLLFVTLIPKAKMTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC 109
Query: 61 RRWWILEPYPTPVPKGKSP 79
RRWWILEPYPTPVPKGKSP
Sbjct: 110 RRWWILEPYPTPVPKGKSP 128
>gi|239742274 PREDICTED: hypothetical protein XP_002342470 [Homo
sapiens]
Length = 87
Score = 81.6 bits (200), Expect = 1e-16
Identities = 34/73 (46%), Positives = 45/73 (61%)
Query: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC 60
M+LH L+ +LL + L P K G+ P + C+ L GVCR +C ++D IG C KCC
Sbjct: 1 MRLHLLLLILLFSILLSPGNKGGLGPAEGHCLNLSGVCRRDVCKVVEDQIGACRRKMKCC 60
Query: 61 RRWWILEPYPTPV 73
R WWIL P PTP+
Sbjct: 61 RAWWILMPIPTPL 73
>gi|239743480 PREDICTED: hypothetical protein XP_002342858 [Homo
sapiens]
Length = 87
Score = 80.1 bits (196), Expect = 4e-16
Identities = 34/73 (46%), Positives = 47/73 (64%)
Query: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC 60
M+LH L+ +LLLF L+ + G+ P + C+ L GVCR +C+ ++D IG C KCC
Sbjct: 1 MRLHLLLLILLLFSILLSPVRGGLGPAEGHCLNLFGVCRTDVCNIVEDQIGACRRRMKCC 60
Query: 61 RRWWILEPYPTPV 73
R WWIL P PTP+
Sbjct: 61 RAWWILMPIPTPL 73
>gi|239744548 PREDICTED: hypothetical protein XP_002343194 [Homo
sapiens]
Length = 192
Score = 78.2 bits (191), Expect = 1e-15
Identities = 32/73 (43%), Positives = 46/73 (63%)
Query: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC 60
++LH L+ +LLLF L+ + + P + C++L GVCR +C ++D IG C KCC
Sbjct: 64 VRLHVLLLILLLFSILLSPVRGALGPAEVHCLSLSGVCRRDVCKVVEDQIGACRRRMKCC 123
Query: 61 RRWWILEPYPTPV 73
R WWIL P PTP+
Sbjct: 124 RAWWILMPIPTPL 136
>gi|8923890 defensin, beta 103A precursor [Homo sapiens]
Length = 67
Score = 35.0 bits (79), Expect = 0.013
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 1 MKLHSLISVLLLFVTLIP-KGKTGVIPGQKQ--CIALKGVCRDKLCSTLDDTIGICN-EG 56
M++H L+ LL F+ L+P G G+I ++ C G C C ++ IG C+ G
Sbjct: 1 MRIHYLLFALL-FLFLVPVPGHGGIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRG 59
Query: 57 KKCCRR 62
+KCCRR
Sbjct: 60 RKCCRR 65
>gi|125656159 beta-defensin 103B precursor [Homo sapiens]
Length = 67
Score = 35.0 bits (79), Expect = 0.013
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 1 MKLHSLISVLLLFVTLIP-KGKTGVIPGQKQ--CIALKGVCRDKLCSTLDDTIGICN-EG 56
M++H L+ LL F+ L+P G G+I ++ C G C C ++ IG C+ G
Sbjct: 1 MRIHYLLFALL-FLFLVPVPGHGGIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRG 59
Query: 57 KKCCRR 62
+KCCRR
Sbjct: 60 RKCCRR 65
>gi|22748611 defensin, beta 106A precursor [Homo sapiens]
Length = 65
Score = 32.3 bits (72), Expect = 0.084
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 29 KQCIALKGVCRDKLCSTLDDTIGICNEGKKCCR 61
++C LKG C++ C ++ I +C + KCCR
Sbjct: 24 EKCNKLKGTCKNN-CGKNEELIALCQKSLKCCR 55
>gi|103485143 defensin, beta 106B precursor [Homo sapiens]
Length = 65
Score = 32.3 bits (72), Expect = 0.084
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 29 KQCIALKGVCRDKLCSTLDDTIGICNEGKKCCR 61
++C LKG C++ C ++ I +C + KCCR
Sbjct: 24 EKCNKLKGTCKNN-CGKNEELIALCQKSLKCCR 55
>gi|239754319 PREDICTED: defensin, beta 133 [Homo sapiens]
Length = 61
Score = 31.2 bits (69), Expect = 0.19
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC 60
MK+H + VL F+ I + C ++G CR + C + IG C + C
Sbjct: 1 MKIHVFLFVLFFFLVPIATRMKCAVKDTYSCFIMRGKCRHE-CHDFEKPIGFCTKLNANC 59
>gi|239748864 PREDICTED: defensin, beta 133 [Homo sapiens]
Length = 61
Score = 31.2 bits (69), Expect = 0.19
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC 60
MK+H + VL F+ I + C ++G CR + C + IG C + C
Sbjct: 1 MKIHVFLFVLFFFLVPIATRMKCAVKDTYSCFIMRGKCRHE-CHDFEKPIGFCTKLNANC 59
>gi|239742893 PREDICTED: beta-defensin 133 [Homo sapiens]
Length = 61
Score = 31.2 bits (69), Expect = 0.19
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC 60
MK+H + VL F+ I + C ++G CR + C + IG C + C
Sbjct: 1 MKIHVFLFVLFFFLVPIATRMKCAVKDTYSCFIMRGKCRHE-CHDFEKPIGFCTKLNANC 59
>gi|110825974 ADAM metallopeptidase with thrombospondin type 1 motif,
2 isoform 1 preproprotein [Homo sapiens]
Length = 1211
Score = 28.1 bits (61), Expect = 1.6
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 39 RDKLCSTLDDTIGICNEGKKCCRRWWILEPYPTPV--PKGKS 78
R LC T DD+ GIC E + R L P P + P KS
Sbjct: 998 RPVLCRTADDSFGICQEERPETARTCRLGPCPRNISDPSKKS 1039
>gi|239757478 PREDICTED: defensin, beta 117 [Homo sapiens]
Length = 53
Score = 27.3 bits (59), Expect = 2.7
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 22 TGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC 60
+ V QK C +KG CR K C + C G CC
Sbjct: 9 SSVCRSQKSCWIIKGHCR-KNCKPGEQVKKPCKNGDYCC 46
>gi|239751980 PREDICTED: defensin, beta 117 [Homo sapiens]
Length = 53
Score = 27.3 bits (59), Expect = 2.7
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 22 TGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC 60
+ V QK C +KG CR K C + C G CC
Sbjct: 9 SSVCRSQKSCWIIKGHCR-KNCKPGEQVKKPCKNGDYCC 46
>gi|239746467 PREDICTED: defensin, beta 117 [Homo sapiens]
Length = 53
Score = 27.3 bits (59), Expect = 2.7
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 22 TGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC 60
+ V QK C +KG CR K C + C G CC
Sbjct: 9 SSVCRSQKSCWIIKGHCR-KNCKPGEQVKKPCKNGDYCC 46
>gi|46409558 beta-defensin 32 precursor [Homo sapiens]
Length = 95
Score = 26.9 bits (58), Expect = 3.5
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC 60
MK L+ L F+T + G G K G CR C + + +CN +KCC
Sbjct: 1 MKFLLLVLAALGFLTQVIPASAG---GSKCVSNTPGYCRT-CCHWGETALFMCNASRKCC 56
>gi|239741731 PREDICTED: hypothetical protein XP_002342307 [Homo
sapiens]
Length = 316
Score = 26.2 bits (56), Expect = 6.0
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 60 CRRWWILEPYPTPVPKG 76
CR W+L P P P P G
Sbjct: 229 CRSRWVLAPPPPPAPPG 245
>gi|24308169 dynein, axonemal, heavy chain 3 [Homo sapiens]
Length = 4116
Score = 26.2 bits (56), Expect = 6.0
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 9/46 (19%)
Query: 39 RDKLCSTLDDTIGICNEGKKCCRRWWIL---------EPYPTPVPK 75
+DKL +L TIGI + K+ W PYP P P+
Sbjct: 3368 KDKLLFSLLLTIGIMKQKKEITEEVWYFLLTGGIALDNPYPNPAPQ 3413
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.143 0.484
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,934,783
Number of Sequences: 37866
Number of extensions: 175213
Number of successful extensions: 325
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 306
Number of HSP's gapped (non-prelim): 25
length of query: 79
length of database: 18,247,518
effective HSP length: 51
effective length of query: 28
effective length of database: 16,316,352
effective search space: 456857856
effective search space used: 456857856
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.