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Search of human proteins with 11128035
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|11128035 protocadherin gamma subfamily B, 2 isoform 1
precursor [Homo sapiens]
(931 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|11128035 protocadherin gamma subfamily B, 2 isoform 1 precurs... 1852 0.0
gi|14270493 protocadherin gamma subfamily B, 2 isoform 2 precurs... 1598 0.0
gi|11128037 protocadherin gamma subfamily B, 1 isoform 1 precurs... 1360 0.0
gi|11128031 protocadherin gamma subfamily B, 5 isoform 1 precurs... 1319 0.0
gi|11128029 protocadherin gamma subfamily B, 6 isoform 1 precurs... 1303 0.0
gi|11128033 protocadherin gamma subfamily B, 3 isoform 1 precurs... 1296 0.0
gi|13470082 protocadherin gamma subfamily B, 4 isoform 1 precurs... 1293 0.0
gi|11128027 protocadherin gamma subfamily B, 7 isoform 1 precurs... 1288 0.0
gi|14270490 protocadherin gamma subfamily B, 1 isoform 2 precurs... 1112 0.0
gi|14270505 protocadherin gamma subfamily B, 5 isoform 2 precurs... 1077 0.0
gi|14270502 protocadherin gamma subfamily B, 6 isoform 2 precurs... 1050 0.0
gi|14270499 protocadherin gamma subfamily B, 4 isoform 2 precurs... 1047 0.0
gi|14270508 protocadherin gamma subfamily B, 7 isoform 2 precurs... 1045 0.0
gi|14270496 protocadherin gamma subfamily B, 3 isoform 2 precurs... 1044 0.0
gi|11056065 protocadherin gamma subfamily A, 6 isoform 1 precurs... 941 0.0
gi|8850232 protocadherin gamma subfamily A, 12 isoform 1 precurs... 934 0.0
gi|14589880 protocadherin gamma subfamily A, 3 isoform 1 precurs... 933 0.0
gi|11128043 protocadherin gamma subfamily A, 9 isoform 1 precurs... 926 0.0
gi|11056032 protocadherin gamma subfamily A, 1 isoform 1 precurs... 922 0.0
gi|11056024 protocadherin gamma subfamily A, 5 isoform 1 precurs... 920 0.0
gi|11128041 protocadherin gamma subfamily A, 10 isoform 1 precur... 919 0.0
gi|11056063 protocadherin gamma subfamily A, 7 isoform 1 precurs... 918 0.0
gi|11128039 protocadherin gamma subfamily A, 11 isoform 1 precur... 909 0.0
gi|11056026 protocadherin gamma subfamily A, 4 isoform 1 precurs... 908 0.0
gi|11056030 protocadherin gamma subfamily A, 2 isoform 1 precurs... 904 0.0
gi|14270484 protocadherin gamma subfamily A, 8 isoform 1 precurs... 900 0.0
gi|14277675 protocadherin gamma subfamily C, 3 isoform 1 precurs... 843 0.0
gi|11128023 protocadherin gamma subfamily C, 5 isoform 1 precurs... 811 0.0
gi|14196474 protocadherin gamma subfamily A, 6 isoform 2 precurs... 699 0.0
gi|14196465 protocadherin gamma subfamily A, 3 isoform 2 precurs... 691 0.0
>gi|11128035 protocadherin gamma subfamily B, 2 isoform 1 precursor
[Homo sapiens]
Length = 931
Score = 1852 bits (4798), Expect = 0.0
Identities = 931/931 (100%), Positives = 931/931 (100%)
Query: 1 MKASSGRCGLVRWLQVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRD 60
MKASSGRCGLVRWLQVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRD
Sbjct: 1 MKASSGRCGLVRWLQVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRD 60
Query: 61 LPARKLRVSAEKEYFTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIA 120
LPARKLRVSAEKEYFTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIA
Sbjct: 61 LPARKLRVSAEKEYFTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIA 120
Query: 121 VIVQDINDNTPLFKQTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDL 180
VIVQDINDNTPLFKQTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDL
Sbjct: 121 VIVQDINDNTPLFKQTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDL 180
Query: 181 AEKQTPDGRKYPELILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPP 240
AEKQTPDGRKYPELILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPP
Sbjct: 181 AEKQTPDGRKYPELILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPP 240
Query: 241 VFSQDVYRVTLREDVPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGE 300
VFSQDVYRVTLREDVPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGE
Sbjct: 241 VFSQDVYRVTLREDVPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGE 300
Query: 301 ITTKDDLDFEIASSYTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDS 360
ITTKDDLDFEIASSYTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDS
Sbjct: 301 ITTKDDLDFEIASSYTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDS 360
Query: 361 PPGTVIALIKTRDRDSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNL 420
PPGTVIALIKTRDRDSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNL
Sbjct: 361 PPGTVIALIKTRDRDSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNL 420
Query: 421 TITATDGGKPPLSSSIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPD 480
TITATDGGKPPLSSSIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPD
Sbjct: 421 TITATDGGKPPLSSSIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPD 480
Query: 481 LGPSGQVSYSIVASDLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
LGPSGQVSYSIVASDLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSP
Sbjct: 481 LGPSGQVSYSIVASDLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
Query: 541 ALSANVSLRVLVGDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH 600
ALSANVSLRVLVGDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH
Sbjct: 541 ALSANVSLRVLVGDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH 600
Query: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660
NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL
Sbjct: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660
Query: 661 HLIFADSLQEVLPDLSDRREPSDPQAKLQFYLVVALALISVLFFLAVILAISLRLRLSSR 720
HLIFADSLQEVLPDLSDRREPSDPQAKLQFYLVVALALISVLFFLAVILAISLRLRLSSR
Sbjct: 661 HLIFADSLQEVLPDLSDRREPSDPQAKLQFYLVVALALISVLFFLAVILAISLRLRLSSR 720
Query: 721 SDAWDCFQPGLSSKPGPGVLPNYSEGTLPYSYNLCVASQSAKTEFNFLNITPELVPAQDL 780
SDAWDCFQPGLSSKPGPGVLPNYSEGTLPYSYNLCVASQSAKTEFNFLNITPELVPAQDL
Sbjct: 721 SDAWDCFQPGLSSKPGPGVLPNYSEGTLPYSYNLCVASQSAKTEFNFLNITPELVPAQDL 780
Query: 781 VCDNASWEQNTNHGAAGVPFASDTILKQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNN 840
VCDNASWEQNTNHGAAGVPFASDTILKQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNN
Sbjct: 781 VCDNASWEQNTNHGAAGVPFASDTILKQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNN 840
Query: 841 QFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSN 900
QFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSN
Sbjct: 841 QFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSN 900
Query: 901 ATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 931
ATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 901 ATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 931
>gi|14270493 protocadherin gamma subfamily B, 2 isoform 2 precursor
[Homo sapiens]
Length = 811
Score = 1598 bits (4138), Expect = 0.0
Identities = 807/807 (100%), Positives = 807/807 (100%)
Query: 1 MKASSGRCGLVRWLQVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRD 60
MKASSGRCGLVRWLQVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRD
Sbjct: 1 MKASSGRCGLVRWLQVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRD 60
Query: 61 LPARKLRVSAEKEYFTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIA 120
LPARKLRVSAEKEYFTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIA
Sbjct: 61 LPARKLRVSAEKEYFTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIA 120
Query: 121 VIVQDINDNTPLFKQTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDL 180
VIVQDINDNTPLFKQTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDL
Sbjct: 121 VIVQDINDNTPLFKQTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDL 180
Query: 181 AEKQTPDGRKYPELILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPP 240
AEKQTPDGRKYPELILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPP
Sbjct: 181 AEKQTPDGRKYPELILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPP 240
Query: 241 VFSQDVYRVTLREDVPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGE 300
VFSQDVYRVTLREDVPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGE
Sbjct: 241 VFSQDVYRVTLREDVPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGE 300
Query: 301 ITTKDDLDFEIASSYTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDS 360
ITTKDDLDFEIASSYTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDS
Sbjct: 301 ITTKDDLDFEIASSYTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDS 360
Query: 361 PPGTVIALIKTRDRDSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNL 420
PPGTVIALIKTRDRDSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNL
Sbjct: 361 PPGTVIALIKTRDRDSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNL 420
Query: 421 TITATDGGKPPLSSSIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPD 480
TITATDGGKPPLSSSIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPD
Sbjct: 421 TITATDGGKPPLSSSIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPD 480
Query: 481 LGPSGQVSYSIVASDLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
LGPSGQVSYSIVASDLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSP
Sbjct: 481 LGPSGQVSYSIVASDLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
Query: 541 ALSANVSLRVLVGDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH 600
ALSANVSLRVLVGDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH
Sbjct: 541 ALSANVSLRVLVGDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH 600
Query: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660
NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL
Sbjct: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660
Query: 661 HLIFADSLQEVLPDLSDRREPSDPQAKLQFYLVVALALISVLFFLAVILAISLRLRLSSR 720
HLIFADSLQEVLPDLSDRREPSDPQAKLQFYLVVALALISVLFFLAVILAISLRLRLSSR
Sbjct: 661 HLIFADSLQEVLPDLSDRREPSDPQAKLQFYLVVALALISVLFFLAVILAISLRLRLSSR 720
Query: 721 SDAWDCFQPGLSSKPGPGVLPNYSEGTLPYSYNLCVASQSAKTEFNFLNITPELVPAQDL 780
SDAWDCFQPGLSSKPGPGVLPNYSEGTLPYSYNLCVASQSAKTEFNFLNITPELVPAQDL
Sbjct: 721 SDAWDCFQPGLSSKPGPGVLPNYSEGTLPYSYNLCVASQSAKTEFNFLNITPELVPAQDL 780
Query: 781 VCDNASWEQNTNHGAAGVPFASDTILK 807
VCDNASWEQNTNHGAAGVPFASDTILK
Sbjct: 781 VCDNASWEQNTNHGAAGVPFASDTILK 807
>gi|11128037 protocadherin gamma subfamily B, 1 isoform 1 precursor
[Homo sapiens]
Length = 927
Score = 1360 bits (3521), Expect = 0.0
Identities = 702/920 (76%), Positives = 776/920 (84%), Gaps = 8/920 (0%)
Query: 15 QVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRDLPARKLRVSAEKEY 74
QVL PFLLSLF GA+ QIRY+IPEELA S VG LAKDLGLSVR+LP RKLRVSAE +Y
Sbjct: 13 QVLFPFLLSLFCGAISQQIRYTIPEELANGSRVGKLAKDLGLSVRELPTRKLRVSAE-DY 71
Query: 75 FTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIAVIVQDINDNTPLFK 134
F V+ ESGDLLV+ RIDRE+ICG++ C L+F+TVAENP+N+F++ V++QDINDN P F
Sbjct: 72 FNVSLESGDLLVNGRIDREKICGRKLECALEFETVAENPMNVFHVVVVIQDINDNAPRFV 131
Query: 135 QTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDLAEKQTPDGRKYPEL 194
I+L+I ES PG F LD A D+DV NSL+ Y +N N+YF L+ K++PDG KYP L
Sbjct: 132 AKGIDLEICESALPGVKFSLDSAQDADVEGNSLKLYTINPNQYFSLSTKESPDGSKYPVL 191
Query: 195 ILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPPVFSQDVYRVTLRED 254
+L+ LDRE S H+L+LTA+DGGDPP SGTT I I+VTDANDN PVFSQ+VYRV+L+E+
Sbjct: 192 LLEKPLDREHQSSHRLILTAMDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYRVSLQEN 251
Query: 255 VPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGEITTKDDLDFEIASS 314
VP G VL+V ATD+DEGINAEITY+F N FNLN TG+ITT LDFE S
Sbjct: 252 VPWGTSVLRVMATDQDEGINAEITYAFLNSPISTS-LFNLNPNTGDITTNGTLDFEETSR 310
Query: 315 YTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDSPPGTVIALIKTRDR 374
Y LS+EAKD G AHC++Q+EI+D+ND APEV S S +PEDS GTVIALIK RD+
Sbjct: 311 YVLSVEAKDGGVHTAHCNVQIEIVDENDNAPEVTFMSFSNQIPEDSDLGTVIALIKVRDK 370
Query: 375 DSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNLTITATDGGKPPLSS 434
DSG+NG V C F L+S+SKNYYKLV GAL+RE+ +YN+TI ATD GKP LSS
Sbjct: 371 DSGQNGMVTCYTQEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTIIATDKGKPALSS 430
Query: 435 SIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPDLGPSGQVSYSIVAS 494
+TLHISD+NDNAPVF Q SY+VHV+ENNPPGASIAQ+SASDPDLGP+G+VSYSI+AS
Sbjct: 431 RTSITLHISDINDNAPVFHQASYVVHVSENNPPGASIAQVSASDPDLGPNGRVSYSILAS 490
Query: 495 DLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGD 554
DL+PRE+LSYVSVS QSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGD
Sbjct: 491 DLEPRELLSYVSVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGD 550
Query: 555 LNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP 614
LNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP
Sbjct: 551 LNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP 610
Query: 615 GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPD 674
GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPD
Sbjct: 611 GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPD 670
Query: 675 LSDRREPSDPQAKLQFYLVVALALISVLFFLAVILAISLRLRLSSRSDAWDCFQPGLSSK 734
LSDR EPSDPQ +LQFYLVVALALISVLF LAVILAI+LRLR SS D CFQ GL SK
Sbjct: 671 LSDRPEPSDPQTELQFYLVVALALISVLFLLAVILAIALRLRRSSSLDTEGCFQTGLCSK 730
Query: 735 PGPGVLPNYSEGTLPYSYNLCVASQSAKTEFNFLNITPELVPAQDLVCDNASW---EQNT 791
GPGV PN+SEGTLPYSYNLC+AS SAKTEFN LN+TPE+ P QDL+CD+ S N
Sbjct: 731 SGPGVPPNHSEGTLPYSYNLCIASHSAKTEFNSLNLTPEMAPPQDLLCDDPSMVVCASNE 790
Query: 792 NHGAAGVPFASDTILKQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMI 851
+H A P S QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMI
Sbjct: 791 DHKIAYDPSLSS---HQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMI 847
Query: 852 LASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRD 911
LASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRD
Sbjct: 848 LASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRD 907
Query: 912 GKAPAGGNGNKKKSGKKEKK 931
GKAPAGGNGNKKKSGKKEKK
Sbjct: 908 GKAPAGGNGNKKKSGKKEKK 927
>gi|11128031 protocadherin gamma subfamily B, 5 isoform 1 precursor
[Homo sapiens]
Length = 923
Score = 1319 bits (3414), Expect = 0.0
Identities = 679/939 (72%), Positives = 771/939 (82%), Gaps = 24/939 (2%)
Query: 1 MKASSGRCGLVRWLQVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRD 60
M + +G G L VL FLLSLF AL QIRY IPEE+ K SVVGNLA DLG SV++
Sbjct: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
Query: 61 LPARKLRVSAEKEYFTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIA 120
LP RKLRVS+EK YFTV+ ESG+LLVS R+DRE+ICGK+P C L+F+ VAENPLN +++
Sbjct: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
Query: 121 VIVQDINDNTPLFKQTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDL 180
V ++DIND+TP F Q L+I ES +PGT F L+ A D+D+G NSLQ+Y L+ N F L
Sbjct: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSL 180
Query: 181 AEKQTPDGRKYPELILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPP 240
K+ DG KYPEL L+ +LDRE+ S H+LVLTA+DGG PP SGTT++RI+VTDANDNPP
Sbjct: 181 IIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPP 240
Query: 241 VFSQDVYRVTLREDVPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGE 300
VF++DVYRV+LRE+VPPG VLQV+ATD+DEGIN+EITYSF+ + F+LN K+GE
Sbjct: 241 VFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFYRTGQ----IFSLNSKSGE 296
Query: 301 ITTKDDLDFEIASSYTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDS 360
ITT+ LDFE Y++ +E +D G L A C++++ I D+ND +PEV S+ + E++
Sbjct: 297 ITTQKKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENA 356
Query: 361 PPGTVIALIKTRDRDSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNL 420
PGT+IALIK D+DSGENGEV CQ+ G F + SSSKN YKLVTDG LDRE+ PEYN+
Sbjct: 357 VPGTLIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNV 416
Query: 421 TITATDGGKPPLSSSIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPD 480
TITATD GKPPLSSSI V LHI DVNDNAPVF Q SY+V V ENNPPGASIAQ+ ASD D
Sbjct: 417 TITATDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLD 476
Query: 481 LGPSGQVSYSIVASDLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
LG +GQVSYSI+ASDL+P + SYVS+SAQSGVVFAQRAFD+EQLR FELTLQARDQGSP
Sbjct: 477 LGLNGQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSP 536
Query: 541 ALSANVSLRVLVGDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH 600
ALSANVSLRVLVGD NDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH
Sbjct: 537 ALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH 596
Query: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660
NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL
Sbjct: 597 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 656
Query: 661 HLIFADSLQEVLPDLSDRREPSDPQAKLQFYLVVALALISVLFFLAVILAISLRLRLSSR 720
HL+FADSLQEVLPD++DR PSDPQA+LQFYLVVALALISVLF LAVILA++LRLR SS
Sbjct: 657 HLVFADSLQEVLPDITDRPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRRSSS 716
Query: 721 SDAWDCFQPGLSSKPGPGVLPNYSEGTLPYSYNLCVASQSAKTEFNFLNITPELVPAQDL 780
AW CFQPGL K GP V PNYS+GTLPYSYNLCVA + KTEFNFL + +L QD+
Sbjct: 717 PAAWSCFQPGLCVKSGPVVPPNYSQGTLPYSYNLCVA-HTGKTEFNFLKCSEQLSSGQDI 775
Query: 781 VCDNASW--------EQNTNHGAAGVPFASDTILKQAPPNTDWRFSQAQRPGTSGSQNGD 832
+C ++S ++T+H QAPPNTDWRFSQAQRPGTSGSQNGD
Sbjct: 776 LCGDSSGALFPLCNSSESTSHPEL-----------QAPPNTDWRFSQAQRPGTSGSQNGD 824
Query: 833 DTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQ 892
DTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQ
Sbjct: 825 DTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQ 884
Query: 893 NVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 931
NVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 885 NVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 923
>gi|11128029 protocadherin gamma subfamily B, 6 isoform 1 precursor
[Homo sapiens]
Length = 930
Score = 1303 bits (3373), Expect = 0.0
Identities = 661/917 (72%), Positives = 743/917 (81%), Gaps = 1/917 (0%)
Query: 15 QVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRDLPARKLRVSAEKEY 74
QVL P LL LF L IRYSIPEELAK SVVGNLAKDLGLSV D+ ARKLRVSAEK +
Sbjct: 15 QVLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLDVSARKLRVSAEKLH 74
Query: 75 FTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIAVIVQDINDNTPLFK 134
F+V+ ESGDLLV +RIDREQIC ++ C L + V ENPLNIF++ V+++D+ND+ P F
Sbjct: 75 FSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVNDHAPQFD 134
Query: 135 QTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDLAEKQTPDGRKYPEL 194
+ +I+L+I ES GT LDPA D D+ NS++ Y +N N YF L + DG KYPEL
Sbjct: 135 KKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSLMVRVNSDGGKYPEL 194
Query: 195 ILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPPVFSQDVYRVTLRED 254
L+ LDREE H L+LTA+DGGDPP+S T I I V D NDNPPVFS+D YR++L E+
Sbjct: 195 SLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPPVFSRDEYRISLSEN 254
Query: 255 VPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGEITTKDDLDFEIASS 314
+PPG VLQVTATD+DEG+NAEI Y F + + KH F+L+EKTG I DFE
Sbjct: 255 LPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGMIKNNQSFDFEDVER 314
Query: 315 YTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDSPPGTVIALIKTRDR 374
YT+ +EAKD G L+ C + +EILD+ND +PE+I+TS+S + E+SPPG V+AL KTRD
Sbjct: 315 YTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENSPPGMVVALFKTRDL 374
Query: 375 DSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNLTITATDGGKPPLSS 434
D G NGEV C + + F + SSS NYYKLVTDGALDRE+ PEYN+TI ATD GKPPLSS
Sbjct: 375 DFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNVTIVATDRGKPPLSS 434
Query: 435 SIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPDLGPSGQVSYSIVAS 494
S +TL+++D+NDNAPVF QTSY+VHVAENNPPGASIAQ+SASDPDLG +G +SYSIVAS
Sbjct: 435 SRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPDLGLNGHISYSIVAS 494
Query: 495 DLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGD 554
DL+P + SYVSVSAQSGVVFAQRAFDHEQLRAF LTLQARD GSP LSANVSLRVLVGD
Sbjct: 495 DLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSPTLSANVSLRVLVGD 554
Query: 555 LNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP 614
NDNAPRVLYPALGPDGSA FDMVPR+AEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP
Sbjct: 555 RNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP 614
Query: 615 GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPD 674
GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHL+FAD+LQE+LPD
Sbjct: 615 GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADNLQEILPD 674
Query: 675 LSDRREPSDPQAKLQFYLVVALALISVLFFLAVILAISLRLRLSSRSDAWDCFQPGLSSK 734
LSDR SDPQA+LQFYLVVALALISVLF LAVILAI+LRLR S WDCF PGL K
Sbjct: 675 LSDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRRSLSPATWDCFHPGLCVK 734
Query: 735 PGPGVLPNYSEGTLPYSYNLCVASQSAKTEFNFLNITPELVPAQDLVCDNASWEQNTNHG 794
GP V PNYSEGTLPYSYNLC+A K EFNFL + L +D+VC + HG
Sbjct: 735 SGPVVPPNYSEGTLPYSYNLCIAHTGTK-EFNFLKCSVPLHSNEDMVCSVSPGALIPPHG 793
Query: 795 AAGVPFASDTILKQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILAS 854
+ +T+ QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILAS
Sbjct: 794 GEDLTSHPETLTSQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILAS 853
Query: 855 ASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKA 914
ASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKA
Sbjct: 854 ASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKA 913
Query: 915 PAGGNGNKKKSGKKEKK 931
PAGGNGNKKKSGKKEKK
Sbjct: 914 PAGGNGNKKKSGKKEKK 930
>gi|11128033 protocadherin gamma subfamily B, 3 isoform 1 precursor
[Homo sapiens]
Length = 929
Score = 1296 bits (3354), Expect = 0.0
Identities = 666/932 (71%), Positives = 751/932 (80%), Gaps = 4/932 (0%)
Query: 1 MKASSGRCGLVRWLQVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRD 60
M SSG G ++L FLLSL L IRY+IPEEL + S+VGNLAKDLG V D
Sbjct: 1 MGNSSGWRGPAGQRRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGD 60
Query: 61 LPARKLRVSAEKEYFTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIA 120
LP R LRV AEK++FTV+PE+G+LLVSDRIDRE+ICGK+ CVL+F+ VAE PLN F++
Sbjct: 61 LPTRNLRVIAEKKFFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVT 120
Query: 121 VIVQDINDNTPLFKQTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDL 180
V++QDINDN P F Q L+I E G TF L+ A D DVG NSLQ+Y+L+ + +F L
Sbjct: 121 VLIQDINDNPPTFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSL 180
Query: 181 AEKQTPDGRKYPELILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPP 240
+K+ DG +YPEL+LK LDREE H LVLTAVDGG+P +S TTQIR+ V DANDNPP
Sbjct: 181 IQKENLDGSRYPELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPP 240
Query: 241 VFSQDVYRVTLREDVPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGE 300
VF+QD+YRV + E++P G VL+V A D DEGINAEI Y+F N+ ++V+ F L+ KTGE
Sbjct: 241 VFTQDMYRVNVAENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGE 300
Query: 301 ITTKDDLDFEIASSYTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDS 360
+TT +LDFE SYT+ +EAKD G A+C +Q++I D+ND APE+ + S S + ED+
Sbjct: 301 LTTIGELDFEERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDA 360
Query: 361 PPGTVIALIKTRDRDSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNL 420
GT +ALIKT D DSG NGE+ CQ+ GN F + +KN Y+LVTDGALDRE+IPEYN+
Sbjct: 361 ELGTAVALIKTHDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNV 420
Query: 421 TITATDGGKPPLSSSIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPD 480
TITATD G PPLSSS +TLHI DVNDN PVF Q SY VHVAENNPPGASIA + ASDPD
Sbjct: 421 TITATDKGNPPLSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPD 480
Query: 481 LGPSGQVSYSIVASDLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
LGP+G VSY IVASDL+PRE+ SYVSVSA+SGVVFAQRAFDHEQLRAFELTLQARDQGSP
Sbjct: 481 LGPNGLVSYYIVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
Query: 541 ALSANVSLRVLVGDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH 600
LSANVSLRVLV D NDNAP VLYPALGP+GSALFDMVPR+AEPGYLVTKVVAVDADSG+
Sbjct: 541 TLSANVSLRVLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGY 600
Query: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660
NAWLSYH++QASEPGLFSLGLRTGEVRTAR LGDR+AARQRLLV VRDGGQ PLSAT L
Sbjct: 601 NAWLSYHIVQASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVML 660
Query: 661 HLIFADSLQEVLPDLSDRREPSDPQAKLQFYLVVALALISVLFFLAVILAISLRLRLSSR 720
HLIFADSLQE+ PDLSDR PSDPQA+LQF+LVVALALISVLF LAVILAISLRLR SSR
Sbjct: 661 HLIFADSLQEIQPDLSDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLRCSSR 720
Query: 721 SDAWDCFQPGLSSKPGPGVLPNYSEGTLPYSYNLCVASQSAKTEFNFLNITPELVPAQDL 780
FQPG+ K PGVLP YSE TLPYSYN C AS S+ TEF FLNI E QDL
Sbjct: 721 PATEGYFQPGVCFKTVPGVLPTYSERTLPYSYNPCAASHSSNTEFKFLNIKAENAAPQDL 780
Query: 781 VCDNASW-EQNTNHGAAGVPFASDTILKQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPN 839
+CD ASW E N N +P S + KQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPN
Sbjct: 781 LCDEASWFESNDN---PEMPSNSGNLQKQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPN 837
Query: 840 NQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGS 899
NQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGS
Sbjct: 838 NQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGS 897
Query: 900 NATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 931
NATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 898 NATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 929
>gi|13470082 protocadherin gamma subfamily B, 4 isoform 1 precursor
[Homo sapiens]
Length = 923
Score = 1293 bits (3345), Expect = 0.0
Identities = 662/934 (70%), Positives = 761/934 (81%), Gaps = 14/934 (1%)
Query: 1 MKASSGRCGLVRWLQVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRD 60
M + +G G L VL FLLSLF AL QIRY IPEE+ K SVVGNLA DLG SV++
Sbjct: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
Query: 61 LPARKLRVSAEKEYFTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIA 120
LP RKLRVS+EK YFTV+ ESG+LLVS R+DRE+ICGK+P C L+F+ VAENPLN +++
Sbjct: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
Query: 121 VIVQDINDNTPLFKQTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDL 180
V ++DIND+TP F Q L+I ES +PGT F L A D+D+G N+LQ Y L+ +++F L
Sbjct: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILGSAHDADIGSNTLQNYQLSPSDHFSL 180
Query: 181 AEKQTPDGRKYPELILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPP 240
K+ DG KYPE++LK LDRE+ + L LTA+D G PP S T QI + VTDANDN P
Sbjct: 181 INKEKSDGSKYPEMVLKTPLDREKQKSYHLTLTALDFGAPPLSSTAQIHVLVTDANDNAP 240
Query: 241 VFSQDVYRVTLREDVPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGE 300
VFSQDVYRV+L E+V PG VLQVTATD+DEG+NAEIT+SF + + F+LN TGE
Sbjct: 241 VFSQDVYRVSLSENVYPGTTVLQVTATDQDEGVNAEITFSFSEASQITQ--FDLNSNTGE 298
Query: 301 ITTKDDLDFEIASSYTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDS 360
IT + LDFE Y++ +EA+D G + A C+++VE++D+ND APEVI S+ + ED+
Sbjct: 299 ITVLNTLDFEEVKEYSIVLEARDGGGMIAQCTVEVEVIDENDNAPEVIFQSLPNLIMEDA 358
Query: 361 PPGTVIALIKTRDRDSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNL 420
GT IAL+K RD+DS NGEV C++ G+ F + +SS+N YKLVTD LDRE+ PEYN+
Sbjct: 359 ELGTHIALLKVRDKDSRHNGEVTCKLEGDVPFKILTSSRNTYKLVTDAVLDREQNPEYNI 418
Query: 421 TITATDGGKPPLSSSIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPD 480
T+TATD GKPPLSSS +TLHI DVNDNAPVF Q+SY+VHVAENNPPGASI+Q+ ASDPD
Sbjct: 419 TVTATDRGKPPLSSSSSITLHIGDVNDNAPVFSQSSYIVHVAENNPPGASISQVRASDPD 478
Query: 481 LGPSGQVSYSIVASDLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
LGP+GQVSY I+ASDL+ RE+ SYVS+SA+SGVVFAQRAFDHEQLRAFELTLQARDQGSP
Sbjct: 479 LGPNGQVSYCIMASDLEQRELSSYVSISAESGVVFAQRAFDHEQLRAFELTLQARDQGSP 538
Query: 541 ALSANVSLRVLVGDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH 600
ALSANVSLRVLV D NDNAPRVLYPALGPDGSALFDMVP AAEPGYLVTKVVAVDADSGH
Sbjct: 539 ALSANVSLRVLVDDRNDNAPRVLYPALGPDGSALFDMVPHAAEPGYLVTKVVAVDADSGH 598
Query: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660
NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDA RQRLLVAVRDGGQPPLSATATL
Sbjct: 599 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAVRQRLLVAVRDGGQPPLSATATL 658
Query: 661 HLIFADSLQEVLPDLSDRREPSDPQAKLQFYLVVALALISVLFFLAVILAISLRLRLSSR 720
HL+FADSLQEVLPD++DR +PSD QA+LQFYLVVALALISVLF +A+ILAI+LRLR SS
Sbjct: 659 HLVFADSLQEVLPDITDRPDPSDLQAELQFYLVVALALISVLFLVAMILAIALRLRRSSS 718
Query: 721 SDAWDCFQPGLSSKPGPGVLPNYSEGTLPYSYNLCVASQSAKTEFNFLNITPELVPAQDL 780
+W CFQPGL K V PNYSEGTLPYSYNLCVA + KTEFNFL + +L QD+
Sbjct: 719 PASWSCFQPGLCVKSESVVPPNYSEGTLPYSYNLCVA-HTGKTEFNFLKCSEQLSSGQDI 777
Query: 781 VCDNASWEQNTNHGAAGVPFASDTIL---KQAPPNTDWRFSQAQRPGTSGSQNGDDTGTW 837
+C ++S A P + + L +QAPPNTDWRFSQAQRPGTSGSQNGDDTGTW
Sbjct: 778 LCGDSS--------GALFPLCNSSELTSHQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTW 829
Query: 838 PNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIP 897
PNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIP
Sbjct: 830 PNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIP 889
Query: 898 GSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 931
GSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 890 GSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 923
>gi|11128027 protocadherin gamma subfamily B, 7 isoform 1 precursor
[Homo sapiens]
Length = 929
Score = 1288 bits (3333), Expect = 0.0
Identities = 658/917 (71%), Positives = 742/917 (80%), Gaps = 2/917 (0%)
Query: 15 QVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRDLPARKLRVSAEKEY 74
QVL P LL LF L IRYSIPEELAK SVVGNLAKDLGLSV D+ AR+LRVSAEK +
Sbjct: 15 QVLFPLLLPLFYPTLCEPIRYSIPEELAKGSVVGNLAKDLGLSVLDVSARELRVSAEKLH 74
Query: 75 FTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIAVIVQDINDNTPLFK 134
F+V+ +SGDLLV DRIDREQIC ++ C L + V ENPLNIF++ V+++D+ND+ P F+
Sbjct: 75 FSVDAQSGDLLVKDRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVNDHAPQFR 134
Query: 135 QTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDLAEKQTPDGRKYPEL 194
+ +INL+I ES G L+ A D D+ NSL +Y L+ NEYF L EK PDG KYPEL
Sbjct: 135 KDEINLEISESVSLGMGTILESAEDPDISMNSLSKYQLSPNEYFSLVEKDNPDGGKYPEL 194
Query: 195 ILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPPVFSQDVYRVTLRED 254
+L+ +LDRE S H LVLTA+DGGDPP+SGT QIRI V DANDNPPVFSQDVYRV+LRED
Sbjct: 195 VLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPPVFSQDVYRVSLRED 254
Query: 255 VPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGEITTKDDLDFEIASS 314
VPPG +L+V ATD+DEGIN+EITYSF V ++ +H F+L+ TG I T+ LDFE
Sbjct: 255 VPPGTSILRVKATDQDEGINSEITYSFFGVADKAQHVFSLDYTTGNILTQQPLDFEEVER 314
Query: 315 YTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDSPPGTVIALIKTRDR 374
YT++IEAKD G L+ C + VE++D+ND +PE+I+TS+S + EDSPPG V+AL KTRD+
Sbjct: 315 YTINIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIMEDSPPGVVVALFKTRDQ 374
Query: 375 DSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNLTITATDGGKPPLSS 434
DSGENGEV C + F + SSS NYYKLVTD ALDRE+ PEYN+TI ATD GKPPLSS
Sbjct: 375 DSGENGEVRCSLSRGVPFKIHSSSNNYYKLVTDEALDREQTPEYNVTIAATDRGKPPLSS 434
Query: 435 SIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPDLGPSGQVSYSIVAS 494
S +TLHI+DVNDNAPVF Q++Y+VHV ENN PGASIAQ+SASDPD G +G+VSYS++AS
Sbjct: 435 SKTITLHITDVNDNAPVFGQSAYLVHVPENNQPGASIAQVSASDPDFGLNGRVSYSLIAS 494
Query: 495 DLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGD 554
DL+ R + SYVSVSAQSGVVFAQRAFDHEQLR FELTLQARDQGSPALSANVSLRVLVGD
Sbjct: 495 DLESRTLSSYVSVSAQSGVVFAQRAFDHEQLRTFELTLQARDQGSPALSANVSLRVLVGD 554
Query: 555 LNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP 614
NDNAPRVLYPALGPDGSALFD VPRAA+PGYLVTKVVAVDADSGHNAWLSYHV+QASEP
Sbjct: 555 RNDNAPRVLYPALGPDGSALFDTVPRAAQPGYLVTKVVAVDADSGHNAWLSYHVVQASEP 614
Query: 615 GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPD 674
GLFSLGLRTGEVR RALGD+D+ RQRLLVAVRDGGQPPLSATATLHL+FADSLQEVLPD
Sbjct: 615 GLFSLGLRTGEVRMVRALGDKDSVRQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLPD 674
Query: 675 LSDRREPSDPQAKLQFYLVVALALISVLFFLAVILAISLRLRLSSRSDAWDCFQPGLSSK 734
SD PSD QA++QFYLVVALALISVLF LAVILAI+LRLR S A DCF+ L SK
Sbjct: 675 FSDHPTPSDSQAEMQFYLVVALALISVLFLLAVILAIALRLRQSFSPTAGDCFESVLCSK 734
Query: 735 PGPGVLPNYSEGTLPYSYNLCVASQSAKTEFNFLNITPELVPAQDLVCDNASWEQNTNHG 794
GP PNYSEGTLPY+YN CV EFNF QD + N +
Sbjct: 735 SGPVGPPNYSEGTLPYAYNFCVPGDQMNPEFNFFTSVDHCPATQDNL--NKDSMLLASIL 792
Query: 795 AAGVPFASDTILKQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILAS 854
V + +QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILAS
Sbjct: 793 TPSVEADKKILKQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILAS 852
Query: 855 ASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKA 914
ASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKA
Sbjct: 853 ASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKA 912
Query: 915 PAGGNGNKKKSGKKEKK 931
PAGGNGNKKKSGKKEKK
Sbjct: 913 PAGGNGNKKKSGKKEKK 929
>gi|14270490 protocadherin gamma subfamily B, 1 isoform 2 precursor
[Homo sapiens]
Length = 810
Score = 1112 bits (2877), Expect = 0.0
Identities = 578/794 (72%), Positives = 653/794 (82%), Gaps = 5/794 (0%)
Query: 15 QVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRDLPARKLRVSAEKEY 74
QVL PFLLSLF GA+ QIRY+IPEELA S VG LAKDLGLSVR+LP RKLRVSAE +Y
Sbjct: 13 QVLFPFLLSLFCGAISQQIRYTIPEELANGSRVGKLAKDLGLSVRELPTRKLRVSAE-DY 71
Query: 75 FTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIAVIVQDINDNTPLFK 134
F V+ ESGDLLV+ RIDRE+ICG++ C L+F+TVAENP+N+F++ V++QDINDN P F
Sbjct: 72 FNVSLESGDLLVNGRIDREKICGRKLECALEFETVAENPMNVFHVVVVIQDINDNAPRFV 131
Query: 135 QTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDLAEKQTPDGRKYPEL 194
I+L+I ES PG F LD A D+DV NSL+ Y +N N+YF L+ K++PDG KYP L
Sbjct: 132 AKGIDLEICESALPGVKFSLDSAQDADVEGNSLKLYTINPNQYFSLSTKESPDGSKYPVL 191
Query: 195 ILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPPVFSQDVYRVTLRED 254
+L+ LDRE S H+L+LTA+DGGDPP SGTT I I+VTDANDN PVFSQ+VYRV+L+E+
Sbjct: 192 LLEKPLDREHQSSHRLILTAMDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYRVSLQEN 251
Query: 255 VPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGEITTKDDLDFEIASS 314
VP G VL+V ATD+DEGINAEITY+F N FNLN TG+ITT LDFE S
Sbjct: 252 VPWGTSVLRVMATDQDEGINAEITYAFLNSPISTS-LFNLNPNTGDITTNGTLDFEETSR 310
Query: 315 YTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDSPPGTVIALIKTRDR 374
Y LS+EAKD G AHC++Q+EI+D+ND APEV S S +PEDS GTVIALIK RD+
Sbjct: 311 YVLSVEAKDGGVHTAHCNVQIEIVDENDNAPEVTFMSFSNQIPEDSDLGTVIALIKVRDK 370
Query: 375 DSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNLTITATDGGKPPLSS 434
DSG+NG V C F L+S+SKNYYKLV GAL+RE+ +YN+TI ATD GKP LSS
Sbjct: 371 DSGQNGMVTCYTQEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTIIATDKGKPALSS 430
Query: 435 SIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPDLGPSGQVSYSIVAS 494
+TLHISD+NDNAPVF Q SY+VHV+ENNPPGASIAQ+SASDPDLGP+G+VSYSI+AS
Sbjct: 431 RTSITLHISDINDNAPVFHQASYVVHVSENNPPGASIAQVSASDPDLGPNGRVSYSILAS 490
Query: 495 DLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGD 554
DL+PRE+LSYVSVS QSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGD
Sbjct: 491 DLEPRELLSYVSVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGD 550
Query: 555 LNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP 614
LNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP
Sbjct: 551 LNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP 610
Query: 615 GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPD 674
GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPD
Sbjct: 611 GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPD 670
Query: 675 LSDRREPSDPQAKLQFYLVVALALISVLFFLAVILAISLRLRLSSRSDAWDCFQPGLSSK 734
LSDR EPSDPQ +LQFYLVVALALISVLF LAVILAI+LRLR SS D CFQ GL SK
Sbjct: 671 LSDRPEPSDPQTELQFYLVVALALISVLFLLAVILAIALRLRRSSSLDTEGCFQTGLCSK 730
Query: 735 PGPGVLPNYSEGTLPYSYNLCVASQSAKTEFNFLNITPELVPAQDLVCDNASW---EQNT 791
GPGV PN+SEGTLPYSYNLC+AS SAKTEFN LN+TPE+ P QDL+CD+ S N
Sbjct: 731 SGPGVPPNHSEGTLPYSYNLCIASHSAKTEFNSLNLTPEMAPPQDLLCDDPSMVVCASNE 790
Query: 792 NHGAAGVPFASDTI 805
+H A P S +
Sbjct: 791 DHKIAYDPSLSSHV 804
>gi|14270505 protocadherin gamma subfamily B, 5 isoform 2 precursor
[Homo sapiens]
Length = 818
Score = 1077 bits (2784), Expect = 0.0
Identities = 553/786 (70%), Positives = 642/786 (81%), Gaps = 5/786 (0%)
Query: 1 MKASSGRCGLVRWLQVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRD 60
M + +G G L VL FLLSLF AL QIRY IPEE+ K SVVGNLA DLG SV++
Sbjct: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
Query: 61 LPARKLRVSAEKEYFTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIA 120
LP RKLRVS+EK YFTV+ ESG+LLVS R+DRE+ICGK+P C L+F+ VAENPLN +++
Sbjct: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
Query: 121 VIVQDINDNTPLFKQTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDL 180
V ++DIND+TP F Q L+I ES +PGT F L+ A D+D+G NSLQ+Y L+ N F L
Sbjct: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSL 180
Query: 181 AEKQTPDGRKYPELILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPP 240
K+ DG KYPEL L+ +LDRE+ S H+LVLTA+DGG PP SGTT++RI+VTDANDNPP
Sbjct: 181 IIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPP 240
Query: 241 VFSQDVYRVTLREDVPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGE 300
VF++DVYRV+LRE+VPPG VLQV+ATD+DEGIN+EITYSF+ + F+LN K+GE
Sbjct: 241 VFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFYRTGQ----IFSLNSKSGE 296
Query: 301 ITTKDDLDFEIASSYTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDS 360
ITT+ LDFE Y++ +E +D G L A C++++ I D+ND +PEV S+ + E++
Sbjct: 297 ITTQKKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENA 356
Query: 361 PPGTVIALIKTRDRDSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNL 420
PGT+IALIK D+DSGENGEV CQ+ G F + SSSKN YKLVTDG LDRE+ PEYN+
Sbjct: 357 VPGTLIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNV 416
Query: 421 TITATDGGKPPLSSSIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPD 480
TITATD GKPPLSSSI V LHI DVNDNAPVF Q SY+V V ENNPPGASIAQ+ ASD D
Sbjct: 417 TITATDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLD 476
Query: 481 LGPSGQVSYSIVASDLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
LG +GQVSYSI+ASDL+P + SYVS+SAQSGVVFAQRAFD+EQLR FELTLQARDQGSP
Sbjct: 477 LGLNGQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSP 536
Query: 541 ALSANVSLRVLVGDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH 600
ALSANVSLRVLVGD NDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH
Sbjct: 537 ALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH 596
Query: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660
NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL
Sbjct: 597 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 656
Query: 661 HLIFADSLQEVLPDLSDRREPSDPQAKLQFYLVVALALISVLFFLAVILAISLRLRLSSR 720
HL+FADSLQEVLPD++DR PSDPQA+LQFYLVVALALISVLF LAVILA++LRLR SS
Sbjct: 657 HLVFADSLQEVLPDITDRPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRRSSS 716
Query: 721 SDAWDCFQPGLSSKPGPGVLPNYSEGTLPYSYNLCVASQSAKTEFNFLNITPELVPAQDL 780
AW CFQPGL K GP V PNYS+GTLPYSYNLCVA + KTEFNFL + +L QD+
Sbjct: 717 PAAWSCFQPGLCVKSGPVVPPNYSQGTLPYSYNLCVA-HTGKTEFNFLKCSEQLSSGQDI 775
Query: 781 VCDNAS 786
+C ++S
Sbjct: 776 LCGDSS 781
>gi|14270502 protocadherin gamma subfamily B, 6 isoform 2 precursor
[Homo sapiens]
Length = 820
Score = 1050 bits (2714), Expect = 0.0
Identities = 537/791 (67%), Positives = 619/791 (78%), Gaps = 1/791 (0%)
Query: 15 QVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRDLPARKLRVSAEKEY 74
QVL P LL LF L IRYSIPEELAK SVVGNLAKDLGLSV D+ ARKLRVSAEK +
Sbjct: 15 QVLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLDVSARKLRVSAEKLH 74
Query: 75 FTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIAVIVQDINDNTPLFK 134
F+V+ ESGDLLV +RIDREQIC ++ C L + V ENPLNIF++ V+++D+ND+ P F
Sbjct: 75 FSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVNDHAPQFD 134
Query: 135 QTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDLAEKQTPDGRKYPEL 194
+ +I+L+I ES GT LDPA D D+ NS++ Y +N N YF L + DG KYPEL
Sbjct: 135 KKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSLMVRVNSDGGKYPEL 194
Query: 195 ILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPPVFSQDVYRVTLRED 254
L+ LDREE H L+LTA+DGGDPP+S T I I V D NDNPPVFS+D YR++L E+
Sbjct: 195 SLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPPVFSRDEYRISLSEN 254
Query: 255 VPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGEITTKDDLDFEIASS 314
+PPG VLQVTATD+DEG+NAEI Y F + + KH F+L+EKTG I DFE
Sbjct: 255 LPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGMIKNNQSFDFEDVER 314
Query: 315 YTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDSPPGTVIALIKTRDR 374
YT+ +EAKD G L+ C + +EILD+ND +PE+I+TS+S + E+SPPG V+AL KTRD
Sbjct: 315 YTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENSPPGMVVALFKTRDL 374
Query: 375 DSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNLTITATDGGKPPLSS 434
D G NGEV C + + F + SSS NYYKLVTDGALDRE+ PEYN+TI ATD GKPPLSS
Sbjct: 375 DFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNVTIVATDRGKPPLSS 434
Query: 435 SIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPDLGPSGQVSYSIVAS 494
S +TL+++D+NDNAPVF QTSY+VHVAENNPPGASIAQ+SASDPDLG +G +SYSIVAS
Sbjct: 435 SRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPDLGLNGHISYSIVAS 494
Query: 495 DLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGD 554
DL+P + SYVSVSAQSGVVFAQRAFDHEQLRAF LTLQARD GSP LSANVSLRVLVGD
Sbjct: 495 DLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSPTLSANVSLRVLVGD 554
Query: 555 LNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP 614
NDNAPRVLYPALGPDGSA FDMVPR+AEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP
Sbjct: 555 RNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP 614
Query: 615 GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPD 674
GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHL+FAD+LQE+LPD
Sbjct: 615 GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADNLQEILPD 674
Query: 675 LSDRREPSDPQAKLQFYLVVALALISVLFFLAVILAISLRLRLSSRSDAWDCFQPGLSSK 734
LSDR SDPQA+LQFYLVVALALISVLF LAVILAI+LRLR S WDCF PGL K
Sbjct: 675 LSDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRRSLSPATWDCFHPGLCVK 734
Query: 735 PGPGVLPNYSEGTLPYSYNLCVASQSAKTEFNFLNITPELVPAQDLVCDNASWEQNTNHG 794
GP V PNYSEGTLPYSYNLC+A K EFNFL + L +D+VC + HG
Sbjct: 735 SGPVVPPNYSEGTLPYSYNLCIAHTGTK-EFNFLKCSVPLHSNEDMVCSVSPGALIPPHG 793
Query: 795 AAGVPFASDTI 805
+ +T+
Sbjct: 794 GEDLTSHPETL 804
>gi|14270499 protocadherin gamma subfamily B, 4 isoform 2 precursor
[Homo sapiens]
Length = 803
Score = 1047 bits (2708), Expect = 0.0
Identities = 535/786 (68%), Positives = 631/786 (80%), Gaps = 3/786 (0%)
Query: 1 MKASSGRCGLVRWLQVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRD 60
M + +G G L VL FLLSLF AL QIRY IPEE+ K SVVGNLA DLG SV++
Sbjct: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
Query: 61 LPARKLRVSAEKEYFTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIA 120
LP RKLRVS+EK YFTV+ ESG+LLVS R+DRE+ICGK+P C L+F+ VAENPLN +++
Sbjct: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
Query: 121 VIVQDINDNTPLFKQTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDL 180
V ++DIND+TP F Q L+I ES +PGT F L A D+D+G N+LQ Y L+ +++F L
Sbjct: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILGSAHDADIGSNTLQNYQLSPSDHFSL 180
Query: 181 AEKQTPDGRKYPELILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPP 240
K+ DG KYPE++LK LDRE+ + L LTA+D G PP S T QI + VTDANDN P
Sbjct: 181 INKEKSDGSKYPEMVLKTPLDREKQKSYHLTLTALDFGAPPLSSTAQIHVLVTDANDNAP 240
Query: 241 VFSQDVYRVTLREDVPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGE 300
VFSQDVYRV+L E+V PG VLQVTATD+DEG+NAEIT+SF + + F+LN TGE
Sbjct: 241 VFSQDVYRVSLSENVYPGTTVLQVTATDQDEGVNAEITFSFSEASQITQ--FDLNSNTGE 298
Query: 301 ITTKDDLDFEIASSYTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDS 360
IT + LDFE Y++ +EA+D G + A C+++VE++D+ND APEVI S+ + ED+
Sbjct: 299 ITVLNTLDFEEVKEYSIVLEARDGGGMIAQCTVEVEVIDENDNAPEVIFQSLPNLIMEDA 358
Query: 361 PPGTVIALIKTRDRDSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNL 420
GT IAL+K RD+DS NGEV C++ G+ F + +SS+N YKLVTD LDRE+ PEYN+
Sbjct: 359 ELGTHIALLKVRDKDSRHNGEVTCKLEGDVPFKILTSSRNTYKLVTDAVLDREQNPEYNI 418
Query: 421 TITATDGGKPPLSSSIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPD 480
T+TATD GKPPLSSS +TLHI DVNDNAPVF Q+SY+VHVAENNPPGASI+Q+ ASDPD
Sbjct: 419 TVTATDRGKPPLSSSSSITLHIGDVNDNAPVFSQSSYIVHVAENNPPGASISQVRASDPD 478
Query: 481 LGPSGQVSYSIVASDLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
LGP+GQVSY I+ASDL+ RE+ SYVS+SA+SGVVFAQRAFDHEQLRAFELTLQARDQGSP
Sbjct: 479 LGPNGQVSYCIMASDLEQRELSSYVSISAESGVVFAQRAFDHEQLRAFELTLQARDQGSP 538
Query: 541 ALSANVSLRVLVGDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH 600
ALSANVSLRVLV D NDNAPRVLYPALGPDGSALFDMVP AAEPGYLVTKVVAVDADSGH
Sbjct: 539 ALSANVSLRVLVDDRNDNAPRVLYPALGPDGSALFDMVPHAAEPGYLVTKVVAVDADSGH 598
Query: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660
NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDA RQRLLVAVRDGGQPPLSATATL
Sbjct: 599 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAVRQRLLVAVRDGGQPPLSATATL 658
Query: 661 HLIFADSLQEVLPDLSDRREPSDPQAKLQFYLVVALALISVLFFLAVILAISLRLRLSSR 720
HL+FADSLQEVLPD++DR +PSD QA+LQFYLVVALALISVLF +A+ILAI+LRLR SS
Sbjct: 659 HLVFADSLQEVLPDITDRPDPSDLQAELQFYLVVALALISVLFLVAMILAIALRLRRSSS 718
Query: 721 SDAWDCFQPGLSSKPGPGVLPNYSEGTLPYSYNLCVASQSAKTEFNFLNITPELVPAQDL 780
+W CFQPGL K V PNYSEGTLPYSYNLCVA + KTEFNFL + +L QD+
Sbjct: 719 PASWSCFQPGLCVKSESVVPPNYSEGTLPYSYNLCVA-HTGKTEFNFLKCSEQLSSGQDI 777
Query: 781 VCDNAS 786
+C ++S
Sbjct: 778 LCGDSS 783
>gi|14270508 protocadherin gamma subfamily B, 7 isoform 2 precursor
[Homo sapiens]
Length = 808
Score = 1045 bits (2702), Expect = 0.0
Identities = 532/765 (69%), Positives = 612/765 (80%)
Query: 15 QVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRDLPARKLRVSAEKEY 74
QVL P LL LF L IRYSIPEELAK SVVGNLAKDLGLSV D+ AR+LRVSAEK +
Sbjct: 15 QVLFPLLLPLFYPTLCEPIRYSIPEELAKGSVVGNLAKDLGLSVLDVSARELRVSAEKLH 74
Query: 75 FTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIAVIVQDINDNTPLFK 134
F+V+ +SGDLLV DRIDREQIC ++ C L + V ENPLNIF++ V+++D+ND+ P F+
Sbjct: 75 FSVDAQSGDLLVKDRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVNDHAPQFR 134
Query: 135 QTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDLAEKQTPDGRKYPEL 194
+ +INL+I ES G L+ A D D+ NSL +Y L+ NEYF L EK PDG KYPEL
Sbjct: 135 KDEINLEISESVSLGMGTILESAEDPDISMNSLSKYQLSPNEYFSLVEKDNPDGGKYPEL 194
Query: 195 ILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPPVFSQDVYRVTLRED 254
+L+ +LDRE S H LVLTA+DGGDPP+SGT QIRI V DANDNPPVFSQDVYRV+LRED
Sbjct: 195 VLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPPVFSQDVYRVSLRED 254
Query: 255 VPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGEITTKDDLDFEIASS 314
VPPG +L+V ATD+DEGIN+EITYSF V ++ +H F+L+ TG I T+ LDFE
Sbjct: 255 VPPGTSILRVKATDQDEGINSEITYSFFGVADKAQHVFSLDYTTGNILTQQPLDFEEVER 314
Query: 315 YTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDSPPGTVIALIKTRDR 374
YT++IEAKD G L+ C + VE++D+ND +PE+I+TS+S + EDSPPG V+AL KTRD+
Sbjct: 315 YTINIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIMEDSPPGVVVALFKTRDQ 374
Query: 375 DSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNLTITATDGGKPPLSS 434
DSGENGEV C + F + SSS NYYKLVTD ALDRE+ PEYN+TI ATD GKPPLSS
Sbjct: 375 DSGENGEVRCSLSRGVPFKIHSSSNNYYKLVTDEALDREQTPEYNVTIAATDRGKPPLSS 434
Query: 435 SIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPDLGPSGQVSYSIVAS 494
S +TLHI+DVNDNAPVF Q++Y+VHV ENN PGASIAQ+SASDPD G +G+VSYS++AS
Sbjct: 435 SKTITLHITDVNDNAPVFGQSAYLVHVPENNQPGASIAQVSASDPDFGLNGRVSYSLIAS 494
Query: 495 DLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGD 554
DL+ R + SYVSVSAQSGVVFAQRAFDHEQLR FELTLQARDQGSPALSANVSLRVLVGD
Sbjct: 495 DLESRTLSSYVSVSAQSGVVFAQRAFDHEQLRTFELTLQARDQGSPALSANVSLRVLVGD 554
Query: 555 LNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP 614
NDNAPRVLYPALGPDGSALFD VPRAA+PGYLVTKVVAVDADSGHNAWLSYHV+QASEP
Sbjct: 555 RNDNAPRVLYPALGPDGSALFDTVPRAAQPGYLVTKVVAVDADSGHNAWLSYHVVQASEP 614
Query: 615 GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPD 674
GLFSLGLRTGEVR RALGD+D+ RQRLLVAVRDGGQPPLSATATLHL+FADSLQEVLPD
Sbjct: 615 GLFSLGLRTGEVRMVRALGDKDSVRQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLPD 674
Query: 675 LSDRREPSDPQAKLQFYLVVALALISVLFFLAVILAISLRLRLSSRSDAWDCFQPGLSSK 734
SD PSD QA++QFYLVVALALISVLF LAVILAI+LRLR S A DCF+ L SK
Sbjct: 675 FSDHPTPSDSQAEMQFYLVVALALISVLFLLAVILAIALRLRQSFSPTAGDCFESVLCSK 734
Query: 735 PGPGVLPNYSEGTLPYSYNLCVASQSAKTEFNFLNITPELVPAQD 779
GP PNYSEGTLPY+YN CV EFNF QD
Sbjct: 735 SGPVGPPNYSEGTLPYAYNFCVPGDQMNPEFNFFTSVDHCPATQD 779
>gi|14270496 protocadherin gamma subfamily B, 3 isoform 2 precursor
[Homo sapiens]
Length = 814
Score = 1044 bits (2699), Expect = 0.0
Identities = 539/793 (67%), Positives = 622/793 (78%), Gaps = 1/793 (0%)
Query: 1 MKASSGRCGLVRWLQVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRD 60
M SSG G ++L FLLSL L IRY+IPEEL + S+VGNLAKDLG V D
Sbjct: 1 MGNSSGWRGPAGQRRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGD 60
Query: 61 LPARKLRVSAEKEYFTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIA 120
LP R LRV AEK++FTV+PE+G+LLVSDRIDRE+ICGK+ CVL+F+ VAE PLN F++
Sbjct: 61 LPTRNLRVIAEKKFFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVT 120
Query: 121 VIVQDINDNTPLFKQTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDL 180
V++QDINDN P F Q L+I E G TF L+ A D DVG NSLQ+Y+L+ + +F L
Sbjct: 121 VLIQDINDNPPTFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSL 180
Query: 181 AEKQTPDGRKYPELILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPP 240
+K+ DG +YPEL+LK LDREE H LVLTAVDGG+P +S TTQIR+ V DANDNPP
Sbjct: 181 IQKENLDGSRYPELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPP 240
Query: 241 VFSQDVYRVTLREDVPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGE 300
VF+QD+YRV + E++P G VL+V A D DEGINAEI Y+F N+ ++V+ F L+ KTGE
Sbjct: 241 VFTQDMYRVNVAENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGE 300
Query: 301 ITTKDDLDFEIASSYTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDS 360
+TT +LDFE SYT+ +EAKD G A+C +Q++I D+ND APE+ + S S + ED+
Sbjct: 301 LTTIGELDFEERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDA 360
Query: 361 PPGTVIALIKTRDRDSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNL 420
GT +ALIKT D DSG NGE+ CQ+ GN F + +KN Y+LVTDGALDRE+IPEYN+
Sbjct: 361 ELGTAVALIKTHDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNV 420
Query: 421 TITATDGGKPPLSSSIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPD 480
TITATD G PPLSSS +TLHI DVNDN PVF Q SY VHVAENNPPGASIA + ASDPD
Sbjct: 421 TITATDKGNPPLSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPD 480
Query: 481 LGPSGQVSYSIVASDLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
LGP+G VSY IVASDL+PRE+ SYVSVSA+SGVVFAQRAFDHEQLRAFELTLQARDQGSP
Sbjct: 481 LGPNGLVSYYIVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
Query: 541 ALSANVSLRVLVGDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH 600
LSANVSLRVLV D NDNAP VLYPALGP+GSALFDMVPR+AEPGYLVTKVVAVDADSG+
Sbjct: 541 TLSANVSLRVLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGY 600
Query: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660
NAWLSYH++QASEPGLFSLGLRTGEVRTAR LGDR+AARQRLLV VRDGGQ PLSAT L
Sbjct: 601 NAWLSYHIVQASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVML 660
Query: 661 HLIFADSLQEVLPDLSDRREPSDPQAKLQFYLVVALALISVLFFLAVILAISLRLRLSSR 720
HLIFADSLQE+ PDLSDR PSDPQA+LQF+LVVALALISVLF LAVILAISLRLR SSR
Sbjct: 661 HLIFADSLQEIQPDLSDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLRCSSR 720
Query: 721 SDAWDCFQPGLSSKPGPGVLPNYSEGTLPYSYNLCVASQSAKTEFNFLNITPELVPAQDL 780
FQPG+ K PGVLP YSE TLPYSYN C AS S+ TEF FLNI E QDL
Sbjct: 721 PATEGYFQPGVCFKTVPGVLPTYSERTLPYSYNPCAASHSSNTEFKFLNIKAENAAPQDL 780
Query: 781 VCDNASW-EQNTN 792
+CD ASW E N N
Sbjct: 781 LCDEASWFESNDN 793
>gi|11056065 protocadherin gamma subfamily A, 6 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 941 bits (2433), Expect = 0.0
Identities = 500/930 (53%), Positives = 644/930 (69%), Gaps = 23/930 (2%)
Query: 15 QVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRDLPARKLRVSAE--K 72
QVLL LL GA QIRYSIPEEL K S VGN+ KDLGL ++L +R+ +
Sbjct: 13 QVLLLTLLGTLWGAAAAQIRYSIPEELEKGSFVGNIVKDLGLEPQELAEHGVRIVSRGRM 72
Query: 73 EYFTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIAVIVQDINDNTPL 132
+ F++NP +G L+ + RIDRE++C + P C++ F+ + E+ LN++ + V + DINDNTP
Sbjct: 73 QLFSLNPRNGSLVTAGRIDREELCAQSPRCLVSFNILVEDKLNLYPVEVEIVDINDNTPR 132
Query: 133 FKQTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDLAEKQTPDGRKYP 192
F + ++ +KI E+ P + FPL D DVG NSLQ + L+ N +F + + G KYP
Sbjct: 133 FLKEELEVKILENAAPSSRFPLMEVYDPDVGMNSLQGFKLSGNSHFSVDVQSEAHGPKYP 192
Query: 193 ELILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPPVFSQDVYRVTLR 252
EL+L+ +LDRE ++++LVLTA+DGGDP +S QI + V D NDN P+F+Q VYRV++
Sbjct: 193 ELVLEGTLDREGEAVYRLVLTAMDGGDPVRSSVAQILVTVLDVNDNTPMFTQPVYRVSVP 252
Query: 253 EDVPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGEITTKDDLDFEIA 312
E++P G VL VTATD+DEG++ E+TYSF + E++ F LN TGEI+T +LD+E +
Sbjct: 253 ENLPVGTPVLAVTATDQDEGVHGEVTYSFVKITEKISQIFCLNVLTGEISTSANLDYEDS 312
Query: 313 SSYTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDSPPGTVIALIKTR 372
S Y L +EA+D L + + ILD ND PEV+VTS S + E +PPGTVIAL +
Sbjct: 313 SFYELGVEARDGPGLRDRAKVLITILDVNDNVPEVVVTSGSRTIAESAPPGTVIALFQVF 372
Query: 373 DRDSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNLTITATDGGKPPL 432
DRDSG NG V C + + F L+ S NYY+LVT+ ALDREE+ YN+T+TATD G PPL
Sbjct: 373 DRDSGLNGLVTCSIPRSLPFELEKSVGNYYRLVTNAALDREEVFLYNITVTATDKGTPPL 432
Query: 433 SSSIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPDLGPSGQVSYSIV 492
S+ I++L+++D NDN P F +SY V+V ENNP GASI ++A DPD+ + QVSYS+
Sbjct: 433 STETIISLNVADTNDNPPTFPHSSYSVYVLENNPRGASIFSVNALDPDVDQNAQVSYSLA 492
Query: 493 ASDLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLV 552
L+ + SYVS+++ +G+++A R+FD+EQLR +L + A D G P LS+NVSL + V
Sbjct: 493 EDTLQGAPLSSYVSINSDTGILYALRSFDYEQLRDLQLWVTASDSGDPPLSSNVSLSLFV 552
Query: 553 GDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQAS 612
D NDNAP +LYPAL DGS ++ PR+AEPGYLVTKVVAVD DSG NAWLSY +L+AS
Sbjct: 553 LDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKAS 612
Query: 613 EPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVL 672
EPGLFS+GL TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT TL + AD + ++L
Sbjct: 613 EPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRIPDIL 672
Query: 673 PDLSDRREPSDP-QAKLQFYLVVALALISVLFFLAVILAISLRLRLSSRSDAWDCFQPGL 731
DL + P + L YLVVA+A +S +F VI+ ++LRL+ +S GL
Sbjct: 673 ADLGSLEPSAKPNDSDLTLYLVVAVAAVSCVFLAFVIVLLALRLQRWHKSRLLQASGGGL 732
Query: 732 SSKPGPGV--LPNYSEGTLPYSYNLCVASQSAKTEFNFLNITPELVPAQDLVCDNASWEQ 789
+S PG + YS+ + + + S K+ F P+ A L+ Q
Sbjct: 733 ASMPGSHFVGVEGVRAFLQTYSHEVSLTADSRKSHLIF----PQPNYADTLI------NQ 782
Query: 790 NTNHGAAGVPFASDTI--------LKQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQ 841
+ + + D + L+QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQ
Sbjct: 783 ESYEKSEPLLITQDLLETKGEPRQLQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQ 842
Query: 842 FDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNA 901
FDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNA
Sbjct: 843 FDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNA 902
Query: 902 TLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 931
TLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 903 TLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 932
>gi|8850232 protocadherin gamma subfamily A, 12 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 934 bits (2414), Expect = 0.0
Identities = 490/924 (53%), Positives = 642/924 (69%), Gaps = 13/924 (1%)
Query: 16 VLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRDLPARKLRV--SAEKE 73
VLL LL QIRYS+PEEL K S VG++++DLGL R+L R +R+ +
Sbjct: 14 VLLGILLGTLWETGCTQIRYSVPEELEKGSRVGDISRDLGLEPRELAERGVRIIPRGRTQ 73
Query: 74 YFTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIAVIVQDINDNTPLF 133
F +NP SG L+ + RIDRE++C C L+ D + E+ + I+ + V V+DINDN P F
Sbjct: 74 LFALNPRSGSLVTAGRIDREELCMGAIKCQLNLDILMEDKVKIYGVEVEVRDINDNAPYF 133
Query: 134 KQTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDLAEKQTPDGRKYPE 193
+++++ +KI E+ FPL A D D+G NSLQ Y L+ N +F L + DG KYPE
Sbjct: 134 RESELEIKISENAATEMRFPLPHAWDPDIGKNSLQSYELSPNTHFSLIVQNGADGSKYPE 193
Query: 194 LILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPPVFSQDVYRVTLRE 253
L+LK +LDREE + H LVLTA DGGDP ++GT +IR+ V DANDN P F+Q YR ++ E
Sbjct: 194 LVLKRALDREEKAAHHLVLTASDGGDPVRTGTARIRVMVLDANDNAPAFAQPEYRASVPE 253
Query: 254 DVPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGEITTKDDLDFEIAS 313
++ G +L V ATD DEG+NAE+ YSF VD++ F L+ +G I+T +LD E +
Sbjct: 254 NLALGTQLLVVNATDPDEGVNAEVRYSFRYVDDKAAQVFKLDCNSGTISTIGELDHEESG 313
Query: 314 SYTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDSPPGTVIALIKTRD 373
Y + ++A D +A + + +LD ND APEV++TS+++ +PE+SP GT+IAL+ D
Sbjct: 314 FYQMEVQAMDNAGYSARAKVLITVLDVNDNAPEVVLTSLASSVPENSPRGTLIALLNVND 373
Query: 374 RDSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNLTITATDGGKPPLS 433
+DS ENG+V C + GN F L+ S NYY LVTD LDRE++P YN+T+TATD G PPLS
Sbjct: 374 QDSEENGQVICFIQGNLPFKLEKSYGNYYSLVTDIVLDREQVPSYNITVTATDRGTPPLS 433
Query: 434 SSIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPDLGPSGQVSYSIVA 493
+ ++L+++D NDN PVF Q SY ++ ENNP G S+ ++A DPD + Q++YS+
Sbjct: 434 TETHISLNVADTNDNPPVFPQASYSAYIPENNPRGVSLVSVTAHDPDCEENAQITYSLAE 493
Query: 494 SDLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVG 553
+ ++ + SYVS+++ +GV++A +FD+EQ R ++ + ARD G P LS+NVSL + V
Sbjct: 494 NTIQGASLSSYVSINSDTGVLYALSSFDYEQFRDLQVKVMARDNGHPPLSSNVSLSLFVL 553
Query: 554 DLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASE 613
D NDNAP +LYPAL DGS ++ PR+AEPGYLVTKVVAVD DSG NAWLSY +L+ASE
Sbjct: 554 DQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASE 613
Query: 614 PGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLP 673
PGLFS+GL TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT TL + ADS+ +VL
Sbjct: 614 PGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPQVLA 673
Query: 674 DLSDRREPSDPQ-AKLQFYLVVALALISVLFFLAVILAISLRLRLSSRSDAWDCFQPGLS 732
DL P++ + + L YLVVA+A +S +F VIL ++LRLR +S GL+
Sbjct: 674 DLGSLESPANSETSDLTLYLVVAVAAVSCVFLAFVILLLALRLRRWHKSRLLQASGGGLT 733
Query: 733 SKPGPGV--LPNYSEGTLPYSYNLCVASQSAKTEFNFLNITPELVPAQDLVCDNASWEQN 790
P + YS+ + + + S K+ F P+ A D++ S+E++
Sbjct: 734 GAPASHFVGVDGVQAFLQTYSHEVSLTTDSRKSHLIF----PQPNYA-DMLVSQESFEKS 788
Query: 791 TNHGAAG-VPFASDT--ILKQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEML 847
+G F+ D+ +++QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEML
Sbjct: 789 EPLLLSGDSVFSKDSHGLIEQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEML 848
Query: 848 QAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAA 907
QAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAA
Sbjct: 849 QAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAA 908
Query: 908 GKRDGKAPAGGNGNKKKSGKKEKK 931
GKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 909 GKRDGKAPAGGNGNKKKSGKKEKK 932
>gi|14589880 protocadherin gamma subfamily A, 3 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 933 bits (2412), Expect = 0.0
Identities = 485/907 (53%), Positives = 629/907 (69%), Gaps = 11/907 (1%)
Query: 32 QIRYSIPEELAKNSVVGNLAKDLGLSVRDLPARKLRVSAE--KEYFTVNPESGDLLVSDR 89
QIRYS+ EEL K S VGN+A DLGL R+L R +R+ + + F++NP+SG L+ ++R
Sbjct: 30 QIRYSVSEELDKGSFVGNIANDLGLEPRELAERGVRIVSRGRTQLFSLNPQSGSLVTAER 89
Query: 90 IDREQICGKQPLCVLDFDTVAENPLNIFYIAVIVQDINDNTPLFKQTKINLKIGESTKPG 149
IDRE++C + PLC++ + + E+ L IF + + ++DINDN P F ++ +KIGE T PG
Sbjct: 90 IDREELCAQIPLCLVKINILVEDKLKIFEVEIEIKDINDNAPNFPTEELEIKIGELTVPG 149
Query: 150 TTFPLDPALDSDVGPNSLQRYHLNDNEYFDLAEKQTPDGRKYPELILKHSLDREEHSLHQ 209
T FP+ A D DVG NSLQ Y L+ N+YF LA +G KYPEL+L+ +LDRE+ +HQ
Sbjct: 150 TRFPIKTAFDPDVGINSLQNYKLSPNDYFSLAVNSVSEGAKYPELVLERALDREKKEIHQ 209
Query: 210 LVLTAVDGGDPPQSGTTQIRIKVTDANDNPPVFSQDVYRVTLREDVPPGFFVLQVTATDR 269
LVL A DGGDP SG I++ V DANDNPP+F+Q YRV++ E+VP G +L V ATD
Sbjct: 210 LVLVASDGGDPVHSGNLHIQVIVLDANDNPPMFTQPEYRVSVWENVPVGTRLLTVNATDP 269
Query: 270 DEGINAEITYSFHNVDEQVKHFFNLNEKTGEITTKDDLDFEIASSYTLSIEAKDPGDLAA 329
DEG NA+++Y + ++ F+LN +GE++ LD+E A Y + IEA+D L +
Sbjct: 270 DEGFNAQVSYILDKMPGKIAEIFHLNSVSGEVSILKSLDYEDAMFYEIKIEAQDGPGLLS 329
Query: 330 HCSIQVEILDDNDCAPEVIVTSVSTPLPEDSPPGTVIALIKTRDRDSGENGEVYCQVLGN 389
I V +LD ND APE+ +TS+++ +PE+ G IALI DRDSG+NG+V VLGN
Sbjct: 330 RAKILVTVLDVNDNAPEITITSLTSSVPEEGTVGREIALIDVHDRDSGQNGQVEVFVLGN 389
Query: 390 AKFILKSSSKNYYKLVTDGALDREEIPEYNLTITATDGGKPPLSSSIIVTLHISDVNDNA 449
F L+ S YY+LVT +LDRE+I EYN+++ A+DGG PPLS+ +TLH+ D+NDN
Sbjct: 390 LPFKLEKSIDQYYRLVTATSLDREQISEYNISLRASDGGSPPLSTETHITLHVIDINDNP 449
Query: 450 PVFQQTSYMVHVAENNPPGASIAQISASDPDLGPSGQVSYSIVASDLKPREILSYVSVSA 509
P F SY ++ ENNP GASI ++A DPD + +++Y++ L+ + S+VS+++
Sbjct: 450 PTFPHLSYSAYIPENNPRGASIFSVTAQDPDSNNNARITYALTEDTLQGAPLSSFVSINS 509
Query: 510 QSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGDLNDNAPRVLYPALGP 569
+GV++A R+FD+EQ R +L + A D G+P LS+NVSL + V D NDNAP +LYPAL
Sbjct: 510 NTGVLYALRSFDYEQFRDLKLLVTASDSGNPPLSSNVSLNLFVLDQNDNAPEILYPALPT 569
Query: 570 DGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGLFSLGLRTGEVRTA 629
DGS ++ PR+AEPGYLVTKVVAVD DSG NAWLSY +L+ASEPGLFS+GL TGEVRTA
Sbjct: 570 DGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGLFSVGLHTGEVRTA 629
Query: 630 RALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPDLSDRREPSDP-QAKL 688
RAL DRDA +Q L+VAV+D GQPPLSAT TL + AD + ++L DL + P + L
Sbjct: 630 RALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRIPDILADLGSLEPSAKPNDSDL 689
Query: 689 QFYLVVALALISVLFFLAVILAISLRLRLSSRSDAWDCFQPGLSSKPGPGVL--PNYSEG 746
YLVVA+A +S +F VI+ ++LRLR +S GL+S PG +
Sbjct: 690 TLYLVVAVAAVSCVFLAFVIVLLALRLRRWHKSRLLQASGGGLASTPGSHFVGADGVRAF 749
Query: 747 TLPYSYNLCVASQSAKTEFNFLNITPELVPAQDLVCDNASWEQNTNHGAAGV--PFASDT 804
YS+ + + + S K+ F P+ A L+ + + +
Sbjct: 750 LQTYSHEVSLTADSRKSHLIF----PQPNYADTLISQESCEKSEPLLITQDLLEMKGDSN 805
Query: 805 ILKQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSST 864
+L+QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSST
Sbjct: 806 LLQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSST 865
Query: 865 LGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKK 924
LGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKK
Sbjct: 866 LGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKK 925
Query: 925 SGKKEKK 931
SGKKEKK
Sbjct: 926 SGKKEKK 932
>gi|11128043 protocadherin gamma subfamily A, 9 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 926 bits (2393), Expect = 0.0
Identities = 490/941 (52%), Positives = 636/941 (67%), Gaps = 22/941 (2%)
Query: 3 ASSGRCGLVRWLQVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRDLP 62
A+ +C L R VLL LL + A QIRYS+PEE K +VGN++KDL L R+L
Sbjct: 2 AAPTKCQL-RGRLVLLCSLLGMLWEARASQIRYSVPEETEKGYIVGNISKDLALEPRELA 60
Query: 63 ARKLRVSAE--KEYFTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIA 120
R++R+ + + F++NP SG L+ + RIDRE++C + P C+++F + E+ + ++ I
Sbjct: 61 ERRVRIVSRGRTQLFSLNPRSGTLVTAGRIDREELCAQSPRCLVNFKVLVEDRVKLYGIE 120
Query: 121 VIVQDINDNTPLFKQTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDL 180
+ V DIND+ P F+ + +KI E PG +PL A+D DVG NSLQ Y L+ N +F L
Sbjct: 121 IEVTDINDSAPKFQAESLEVKINEIAVPGARYPLPEAIDPDVGVNSLQSYQLSPNHHFSL 180
Query: 181 AEKQTPDGRKYPELILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPP 240
+ +G PEL+L+ +LDREE + H LVLTA DGG+P +S T +I + V D NDN P
Sbjct: 181 NVQTGDNGAINPELVLERALDREEATAHHLVLTASDGGEPRRSSTVRIHVTVLDTNDNAP 240
Query: 241 VFSQDVYRVTLREDVPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGE 300
VF+Q +YRV + E+VPPG ++L TA+D DEGIN ++ Y F ++E+ F LNE TGE
Sbjct: 241 VFAQRIYRVKVLENVPPGTWLLTATASDLDEGINGKVAYKFWKINEKQSLLFQLNENTGE 300
Query: 301 ITTKDDLDFEIASSYTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDS 360
I+T LD+E S Y + I+A+D G L + + + D ND PEV +TS+ +P+ ED+
Sbjct: 301 ISTAKSLDYEECSFYEMEIQAEDGGGLKGWTKVLISVEDVNDNRPEVTITSLFSPVREDA 360
Query: 361 PPGTVIALIKTRDRDSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNL 420
P GTVI L DRDSG+NG+V C + N F L++S ++YY+L+T LDRE+ EYN+
Sbjct: 361 PQGTVILLFNAHDRDSGKNGQVVCSIQENLSFTLENSEEDYYRLLTAQILDREKASEYNI 420
Query: 421 TITATDGGKPPLSSSIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPD 480
T+TATD G PPLS+ I +TL ++D+NDN P F Q SY V++ ENN G SI + A DPD
Sbjct: 421 TVTATDRGTPPLSTEIHITLQVTDINDNPPAFSQASYSVYLPENNARGTSIFSVIAYDPD 480
Query: 481 LGPSGQVSYSIVASDLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
+ +V YS+ ++ + +YVS+++ +GV++A +FD+EQ R ++ + A D GSP
Sbjct: 481 SNENSRVIYSLAEDTIQGSPLSTYVSINSDTGVLYALCSFDYEQFRDLQMQVTASDSGSP 540
Query: 541 ALSANVSLRVLVGDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH 600
LS+NVSLR+ V D NDNAP +LYPAL DGS ++ PR+AEPGYLVTKVVAVD DSG
Sbjct: 541 PLSSNVSLRLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQ 600
Query: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660
NAWLSY + +ASEPGLFS+GL TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT TL
Sbjct: 601 NAWLSYRLFKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTL 660
Query: 661 HLIFADSLQEVLPDLSDRREPSDPQAK-LQFYLVVALALISVLFFLAVILAISLRLRLSS 719
+ ADS+ ++L DL + P+D +A L YLVVA+A++S +F VI ++LRLR
Sbjct: 661 TVAIADSIPDILADLGSLQIPADLEASDLTLYLVVAVAVVSCVFLTFVITLLALRLRHWH 720
Query: 720 RSDAWDCFQPGLSSKPGP---------GVLPNYSEGTLPYSYNLCVASQSAKTEFNFLNI 770
S GL+ P L YS+ ++L S+ + F N
Sbjct: 721 SSHLLRATSDGLAGVPTSHFVGVDGVRAFLQTYSQ-----EFSLTADSRKSHLIFPQPNY 775
Query: 771 TPELVPAQDLVCDNASWEQNTNHGAAGVPFASDTILKQAPPNTDWRFSQAQRPGTSGSQN 830
L+ Q C+ E + P ++ QAPPNTDWRFSQAQRPGTSGSQN
Sbjct: 776 ADTLISQQS--CEKN--EPLCVSVDSKFPIEDTPLVPQAPPNTDWRFSQAQRPGTSGSQN 831
Query: 831 GDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDY 890
GDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDY
Sbjct: 832 GDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDY 891
Query: 891 RQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 931
RQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 892 RQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 932
>gi|11056032 protocadherin gamma subfamily A, 1 isoform 1 precursor
[Homo sapiens]
Length = 931
Score = 922 bits (2384), Expect = 0.0
Identities = 492/941 (52%), Positives = 633/941 (67%), Gaps = 20/941 (2%)
Query: 1 MKASSGRCGLVRWLQVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRD 60
MK G R + + L L L GA I YS+PEE K S VGN+AKDLGL ++
Sbjct: 1 MKIQKKLTGCSRLMLLCLSLELLLEAGA--GNIHYSVPEETDKGSFVGNIAKDLGLQPQE 58
Query: 61 LPARKLRVSAEKEY--FTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFY 118
L +R+ + F +NP SG L+ + RIDRE++C + C++ F+ + E+ + +F
Sbjct: 59 LADGGVRIVSRGRMPLFALNPRSGSLITARRIDREELCAQSMPCLVSFNILVEDKMKLFP 118
Query: 119 IAVIVQDINDNTPLFKQTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYF 178
+ V + DINDNTP F+ ++ K+ E T PGT L D DVG NSLQ Y L+ N +F
Sbjct: 119 VEVEIIDINDNTPQFQLEELEFKMNEITTPGTRVSLPFGQDLDVGMNSLQSYQLSSNPHF 178
Query: 179 DLAEKQTPDGRKYPELILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDN 238
L +Q DG ++PE++L+ LDREE ++H L+LTA DGG+P +SGT +I I+V DANDN
Sbjct: 179 SLDVQQGADGPQHPEMVLQSPLDREEEAVHHLILTASDGGEPVRSGTLRIYIQVVDANDN 238
Query: 239 PPVFSQDVYRVTLREDVPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKT 298
PP F+Q Y + + E+VP G +L V ATD DEG N E+TYSFHNVD +V F L+ T
Sbjct: 239 PPAFTQAQYHINVPENVPLGTQLLMVNATDPDEGANGEVTYSFHNVDHRVAQIFRLDSYT 298
Query: 299 GEITTKDDLDFEIASSYTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPE 358
GEI+ K+ LDFE Y++ ++A+D L A + +++LD ND APEV +TSV+T +PE
Sbjct: 299 GEISNKEPLDFEEYKMYSMEVQAQDGAGLMAKVKVLIKVLDVNDNAPEVTITSVTTAVPE 358
Query: 359 DSPPGTVIALIKTRDRDSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEY 418
+ PPGT+IALI D+DSG+NG C + GN F L+ NYY+LVT+ LDRE I Y
Sbjct: 359 NFPPGTIIALISVHDQDSGDNGYTTCFIPGNLPFKLEKLVDNYYRLVTERTLDRELISGY 418
Query: 419 NLTITATDGGKPPLSSSIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASD 478
N+TITA D G P LS+ ++L ++D+NDN+PVF Q SY ++ ENNP GASI + A D
Sbjct: 419 NITITAIDQGTPALSTETHISLLVTDINDNSPVFHQDSYSAYIPENNPRGASIFSVRAHD 478
Query: 479 PDLGPSGQVSYSIVASDLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQG 538
D + Q++YS++ ++ + +Y+S+++ +GV++A R+FD+EQ R +L + ARD G
Sbjct: 479 LDSNENAQITYSLIEDTIQGAPLSAYLSINSDTGVLYALRSFDYEQFRDMQLKVMARDSG 538
Query: 539 SPALSANVSLRVLVGDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADS 598
P LS+NVSL + + D NDNAP +LYPAL DGS ++ P +AEPGYLVTKVVAVD DS
Sbjct: 539 DPPLSSNVSLSLFLLDQNDNAPEILYPALPTDGSTGVELAPLSAEPGYLVTKVVAVDRDS 598
Query: 599 GHNAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATA 658
G NAWLSY +L+ASEPGLFS+GL TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT
Sbjct: 599 GQNAWLSYRLLKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATV 658
Query: 659 TLHLIFADSLQEVLPDLSDRREPSDP-QAKLQFYLVVALALISVLFFLAVILAISLRLRL 717
TL + AD + ++L DL + P + L YLVVA A +S +F VI+ ++ RLR
Sbjct: 659 TLTVAVADRISDILADLGSLEPSAKPNDSDLTLYLVVAAAAVSCVFLAFVIVLLAHRLRR 718
Query: 718 SSRSDAWDCFQPGLSSKPGPGV--LPNYSEGTLPYSYNLCVASQSAKTEFNFLNITPELV 775
+S GL+S PG + YS+ + + + S K+ F P+
Sbjct: 719 WHKSRLLQASGGGLASMPGSHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIF----PQPN 774
Query: 776 PAQDLVCDNASWEQNTNHGAAGVPFA-----SDTILKQAPPNTDWRFSQAQRPGTSGSQN 830
A L+ S E G P + + +QAPPNTDWRFSQAQRPGTSGSQN
Sbjct: 775 YADTLI----SQESCEKKGFLSAPQSLLEDKKEPFSQQAPPNTDWRFSQAQRPGTSGSQN 830
Query: 831 GDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDY 890
GDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDY
Sbjct: 831 GDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDY 890
Query: 891 RQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 931
RQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 891 RQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 931
>gi|11056024 protocadherin gamma subfamily A, 5 isoform 1 precursor
[Homo sapiens]
Length = 931
Score = 920 bits (2378), Expect = 0.0
Identities = 490/926 (52%), Positives = 633/926 (68%), Gaps = 15/926 (1%)
Query: 15 QVLLPFLLS---LFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRDLPARKLRVSAE 71
++LLPF+L PG+ QIRYS+PEEL K S VGN+AKDLGL ++L R +R+ +
Sbjct: 12 ELLLPFMLLGTLCEPGS--GQIRYSMPEELDKGSFVGNIAKDLGLEPQELAERGVRIVSR 69
Query: 72 --KEYFTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIAVIVQDINDN 129
+ F +NP SG L+ + RIDRE++C + PLCV++F+ + EN + I+ + V + DINDN
Sbjct: 70 GRTQLFALNPRSGSLVTAGRIDREELCAQSPLCVVNFNILVENKMKIYGVEVEIIDINDN 129
Query: 130 TPLFKQTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDLAEKQTPDGR 189
P F+ ++ +K+ E+ GT L A D+DVG NSL+ Y L+ N +F L DG+
Sbjct: 130 FPRFRDEELKVKVNENAAAGTRLVLPFARDADVGVNSLRSYQLSSNLHFSLDVVSGTDGQ 189
Query: 190 KYPELILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPPVFSQDVYRV 249
KYPEL+L+ LDRE+ ++H L+LTA+DGGDP SGTT IR+ V DANDN P+F+ Y V
Sbjct: 190 KYPELVLEQPLDREKETVHDLLLTALDGGDPVLSGTTHIRVTVLDANDNAPLFTPSEYSV 249
Query: 250 TLREDVPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGEITTKDDLDF 309
++ E++P G +L +TATD DEGIN ++TYSF N +E++ F L+ GEI+T LD+
Sbjct: 250 SVPENIPVGTRLLMLTATDPDEGINGKLTYSFRNEEEKISETFQLDSNLGEISTLQSLDY 309
Query: 310 EIASSYTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDSPPGTVIALI 369
E + Y + + A+D G L A + V + D ND APEVI+TS+++ + ED PGTVIAL
Sbjct: 310 EESRFYLMEVVAQDGGALVASAKVVVTVQDVNDNAPEVILTSLTSSISEDCLPGTVIALF 369
Query: 370 KTRDRDSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNLTITATDGGK 429
D DSGENGE+ C + N F L+ S NYY L+T LDREE +YN+T+T D G
Sbjct: 370 SVHDGDSGENGEIACSIPRNLPFKLEKSVDNYYHLLTTRDLDREETSDYNITLTVMDHGT 429
Query: 430 PPLSSSIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPDLGPSGQVSY 489
PPLS+ + L ++DVNDN P F Q SY V ENNP G SI ++A DPD G + +V+Y
Sbjct: 430 PPLSTESHIPLKVADVNDNPPNFPQASYSTSVTENNPRGVSIFSVTAHDPDSGDNARVTY 489
Query: 490 SIVASDLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLR 549
S+ + + SYVS+++ +GV++A R+FD+EQLR +L + A D G+P LS+NVSL
Sbjct: 490 SLAEDTFQGAPLSSYVSINSDTGVLYALRSFDYEQLRDLQLWVTASDSGNPPLSSNVSLS 549
Query: 550 VLVGDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVL 609
+ V D NDN P +LYPAL DGS ++ PR+AEPGYLVTKVVAVD DSG NAWLSY +L
Sbjct: 550 LFVLDQNDNTPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLL 609
Query: 610 QASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQ 669
+ASEPGLF++GL TGEVRTARAL DRDA +Q L+VAV D GQPPLSAT T+ + AD +
Sbjct: 610 KASEPGLFAVGLHTGEVRTARALLDRDALKQSLVVAVEDHGQPPLSATFTVTVAVADRIP 669
Query: 670 EVLPDLSDRREPSDPQ-AKLQFYLVVALALISVLFFLAVILAISLRLRLSSRSDAWDCFQ 728
++L DL + P DP+ L YLVVA+A +S +F VI+ + LRLR +S
Sbjct: 670 DILADLGSIKTPIDPEDLDLTLYLVVAVAAVSCVFLAFVIVLLVLRLRRWHKSRLLQAEG 729
Query: 729 PGLSSKPGPGV--LPNYSEGTLPYSYNLCVASQSAKTEFNFLNITPELVPAQDLVCDNAS 786
L+ P + YS+ + + + S K+ F P+ A L+ + +
Sbjct: 730 SRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIF----PQPNYADTLLSEESC 785
Query: 787 WEQNTNHGAAGVPF-ASDTILKQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTE 845
+ + V + ++QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTE
Sbjct: 786 EKSEPLLMSDKVDANKEERRVQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTE 845
Query: 846 MLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTN 905
MLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTN
Sbjct: 846 MLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTN 905
Query: 906 AAGKRDGKAPAGGNGNKKKSGKKEKK 931
AAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 906 AAGKRDGKAPAGGNGNKKKSGKKEKK 931
>gi|11128041 protocadherin gamma subfamily A, 10 isoform 1 precursor
[Homo sapiens]
Length = 936
Score = 919 bits (2374), Expect = 0.0
Identities = 481/908 (52%), Positives = 624/908 (68%), Gaps = 13/908 (1%)
Query: 32 QIRYSIPEELAKNSVVGNLAKDLGLSVRDLPARKLRVSAE--KEYFTVNPESGDLLVSDR 89
QI YSIPEEL K S VGN++KDLGL+ R+L R +R+ + + F++NP SG L+ + R
Sbjct: 34 QISYSIPEELEKGSFVGNISKDLGLAPRELAERGVRIVSRGRTQLFSLNPRSGSLITAGR 93
Query: 90 IDREQICGKQPLCVLDFDTVAENPLNIFYIAVIVQDINDNTPLFKQTKINLKIGESTKPG 149
IDRE++C + CV+ F+ + E+ + +F I + V DINDN P F+ +++KI E+ G
Sbjct: 94 IDREELCAQSARCVVSFNILVEDRVKLFGIEIEVTDINDNAPKFQAENLDVKINENVAAG 153
Query: 150 TTFPLDPALDSDVGPNSLQRYHLNDNEYFDLAEKQTPDGRKYPELILKHSLDREEHSLHQ 209
FPL A+D DVG NSLQ Y L+ N++F L + +G KYPEL+L+HSLDREE ++H
Sbjct: 154 MRFPLPEAIDPDVGVNSLQSYQLSPNKHFSLRVQSRANGVKYPELVLEHSLDREEEAIHH 213
Query: 210 LVLTAVDGGDPPQSGTTQIRIKVTDANDNPPVFSQDVYRVTLREDVPPGFFVLQVTATDR 269
LVLTA DGGDP +SGT + + V DANDN PVF+ YRV++ E++P G +L VTATDR
Sbjct: 214 LVLTASDGGDPLRSGTVLVSVTVFDANDNAPVFTLPEYRVSVPENLPVGTQLLTVTATDR 273
Query: 270 DEGINAEITYSFHNVDEQVKHFFNLNEKTGEITTKDDLDFEIASSYTLSIEAKDPGDLAA 329
DEG N E+TYSF + + F LN+ TGEI ++LD+E Y + I+A+D G A
Sbjct: 274 DEGANGEVTYSFRKLPDTQLLKFQLNKYTGEIKISENLDYEETGFYEIEIQAEDGGAYLA 333
Query: 330 HCSIQVEILDDNDCAPEVIVTSVSTPLPEDSPPGTVIALIKTRDRDSGENGEVYCQVLGN 389
+ + + D ND +PE+ +TS+ +P+ EDSP GTV+AL+ D DS +NG+V C +L
Sbjct: 334 TAKVLITVEDVNDNSPELTITSLFSPVTEDSPLGTVVALLNVHDLDSEQNGQVTCSILAY 393
Query: 390 AKFILKSSSKNYYKLVTDGALDREEIPEYNLTITATDGGKPPLSSSIIVTLHISDVNDNA 449
F L+ S +YY+LV ALDRE++ YN+T+TATDGG PPLS+ L ++D+NDN
Sbjct: 394 LPFKLEKSIDSYYRLVIHRALDREQVSSYNITVTATDGGSPPLSTEAHFMLQVADINDNP 453
Query: 450 PVFQQTSYMVHVAENNPPGASIAQISASDPDLGPSGQVSYSIVASDLKPREILSYVSVSA 509
P F Q SY ++ ENN GASI ++A DPD + Q+ YS+ ++ + SY+S+++
Sbjct: 454 PTFSQVSYFTYIPENNARGASIFSVTALDPDSKENAQIIYSLAEDTIQGVPLSSYISINS 513
Query: 510 QSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGDLNDNAPRVLYPALGP 569
+GV++A R+FD+EQ ++ + A D G P LS+NVSL + V D NDNAP +LYPAL
Sbjct: 514 DTGVLYALRSFDYEQFHELQMQVTASDSGDPPLSSNVSLSLFVLDQNDNAPEILYPALPT 573
Query: 570 DGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGLFSLGLRTGEVRTA 629
DGS ++ PR+AEPGYLVTKVVAVD DSG NAWLSY +L+ASEPGLF++G TGEVRTA
Sbjct: 574 DGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGLFAVGEHTGEVRTA 633
Query: 630 RALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPDLSDRREPSDPQ-AKL 688
RAL DRDA +Q L+VAV+D GQPPLSAT TL + ADS+ +VL DL P++ + + L
Sbjct: 634 RALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPQVLADLGSFESPANSETSDL 693
Query: 689 QFYLVVALALISVLFFLAVILAISLRLRLSSRSDAWDCFQPGLSSKPGPGV--LPNYSEG 746
YLVVA+A +S +F VI+ ++ RLR +S GL+ G +
Sbjct: 694 TLYLVVAVAAVSCVFLAFVIVLLAHRLRRWHKSRLLQASGGGLTGVSGSHFVGVDGVRAF 753
Query: 747 TLPYSYNLCVASQSAKTEFNFLNITPELVPAQDLVCDNASWEQNTNHGA---AGVPFASD 803
YS+ + + + S K+ F P+ A L+ S E+N + P
Sbjct: 754 LQTYSHEVSLTADSRKSHLIF----PQPNYADTLI-SQESCEKNDPLSLLDDSKFPIEDT 808
Query: 804 TILKQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSS 863
++ QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSS
Sbjct: 809 PLVPQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSS 868
Query: 864 TLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKK 923
TLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKK
Sbjct: 869 TLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKK 928
Query: 924 KSGKKEKK 931
KSGKKEKK
Sbjct: 929 KSGKKEKK 936
>gi|11056063 protocadherin gamma subfamily A, 7 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 918 bits (2372), Expect = 0.0
Identities = 498/927 (53%), Positives = 637/927 (68%), Gaps = 23/927 (2%)
Query: 20 FLLSLFPG----ALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRDLPARKLRVSAE--KE 73
FLLS+ G A +I YS+ EE K S VG++AKDLGL R+L R +R+ + +
Sbjct: 14 FLLSILLGTPWEAWAGRILYSVSEETDKGSFVGDIAKDLGLEPRELAERGVRIISRGRTQ 73
Query: 74 YFTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIAVIVQDINDNTPLF 133
F +N SG L+ + RIDRE+IC + C+++F+ + E+ +N++ I V + DINDN P F
Sbjct: 74 LFALNQRSGSLVTAGRIDREEICAQSARCLVNFNILMEDKMNLYPIDVEIIDINDNVPRF 133
Query: 134 KQTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDLAEKQTPDGRKYPE 193
+IN+KI E+T PG FPL A D DVG NSLQ Y L+ N +F LA + D KYPE
Sbjct: 134 LTEEINVKIMENTAPGVRFPLSEAGDPDVGTNSLQSYQLSPNRHFSLAVQSGDDETKYPE 193
Query: 194 LILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPPVFSQDVYRVTLRE 253
L+L+ LDREE +H LVLTA DGGDPP+S T I++ V D ND+ PVFS Y+VT+ E
Sbjct: 194 LVLERVLDREEERVHHLVLTASDGGDPPRSSTAHIQVTVVDVNDHTPVFSLPQYQVTVPE 253
Query: 254 DVPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGEITTKDDLDFEIAS 313
+VP G +L V A D DEG+N E+TYSF + ++ F+LN TGEI+T + LD+E +
Sbjct: 254 NVPVGTRLLTVHAIDLDEGVNGEVTYSFRKITPKLPKMFHLNSLTGEISTLEGLDYEETA 313
Query: 314 SYTLSIEAKD-PGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDSPPGTVIALIKTR 372
Y + ++A+D PG L + + +LD ND APEV +TS+S+ +PED+P GTVIAL +
Sbjct: 314 FYEMEVQAQDGPGSLTK-AKVLITVLDVNDNAPEVTMTSLSSSIPEDTPLGTVIALFYLQ 372
Query: 373 DRDSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNLTITATDGGKPPL 432
DRDSG+NGEV C + N F L+ S NYY+LVT LDRE + YN+T+ ATDGG PPL
Sbjct: 373 DRDSGKNGEVTCTIPENLPFKLEKSIDNYYRLVTTKNLDRETLSLYNITLKATDGGTPPL 432
Query: 433 SSSIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPDLGPSGQVSYSIV 492
S + + ++D NDN P F +SY V++AENNP GASI ++A D D + Q++YS+
Sbjct: 433 SRETHIFMQVADTNDNPPTFPHSSYSVYIAENNPRGASIFLVTAQDHDSEDNAQITYSLA 492
Query: 493 ASDLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLV 552
++ + SYVS+++ +GV++A ++FD+EQLR +L + A D G P LS+N+SL + V
Sbjct: 493 EDTIQGAPVSSYVSINSDTGVLYALQSFDYEQLRELQLRVTAHDSGDPPLSSNMSLSLFV 552
Query: 553 GDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQAS 612
D NDN P +LYPAL DGS ++ PR+AEPGYLVTKVVAVD DSG NAWLSY +L+AS
Sbjct: 553 LDQNDNPPEILYPALPTDGSTGMELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYLLLKAS 612
Query: 613 EPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVL 672
EPGLF++GL TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT TL + ADS+ EVL
Sbjct: 613 EPGLFAVGLYTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPEVL 672
Query: 673 PDLSDRREPSDP--QAKLQFYLVVALALISVLFFLAVILAISLRLRLSSRSDAWDCFQPG 730
DL EPSD L YLVVA+A +S +F V++ ++LRLR +S + G
Sbjct: 673 ADLGS-LEPSDGPYNYDLTLYLVVAVATVSCVFLAFVLVLLALRLRRWHKSRLLQASEGG 731
Query: 731 LSSKPGPGV--LPNYSEGTLPYSYNLCVASQSAKTEFNFLNITPELVPAQDLVCDNASWE 788
L++ P + YS+ + + + S K+ F P V D++ S E
Sbjct: 732 LANVPTSHFVGMDGVQAFLQTYSHEVSLTADSRKSHLIFPQ--PNYV---DMLISQESCE 786
Query: 789 QNTNHGAAGVPF----ASDTILKQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDT 844
+N + V F + ++QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDT
Sbjct: 787 KNDSL-LTSVDFQECKENLPSIQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDT 845
Query: 845 EMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLT 904
EMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLT
Sbjct: 846 EMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLT 905
Query: 905 NAAGKRDGKAPAGGNGNKKKSGKKEKK 931
NAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 906 NAAGKRDGKAPAGGNGNKKKSGKKEKK 932
>gi|11128039 protocadherin gamma subfamily A, 11 isoform 1 precursor
[Homo sapiens]
Length = 935
Score = 909 bits (2350), Expect = 0.0
Identities = 484/926 (52%), Positives = 626/926 (67%), Gaps = 11/926 (1%)
Query: 14 LQVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRDLPARKLRVSA--E 71
L +LL L G QIRYS+PEE K S VGN++KDLGL R+L R +R+ + +
Sbjct: 13 LLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPRELAKRGVRIVSRGK 72
Query: 72 KEYFTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIAVIVQDINDNTP 131
+ F VNP SG L+ + RIDRE++C C L+ + + E+ L I+ + V + DINDN P
Sbjct: 73 TQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGVEVEIIDINDNAP 132
Query: 132 LFKQTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDLAEKQTPDGRKY 191
F++ ++ +K+ E PG F L A D DVG NSLQ Y L+ N YF L + DG K
Sbjct: 133 SFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQLRGRTDGAKN 192
Query: 192 PELILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPPVFSQDVYRVTL 251
PEL+L+ SLDRE+ + H L+LTA+DGGDP + G IR+ V D ND+ P+F+Q VYRV++
Sbjct: 193 PELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFTQSVYRVSV 252
Query: 252 REDVPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGEITTKDDLDFEI 311
E++ G VL V ATD DEGIN E+ YSF N++ + F L+ +TGE+ + LDFE
Sbjct: 253 PENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTGEVQVRGSLDFEK 312
Query: 312 ASSYTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDSPPGTVIALIKT 371
Y + I+ +D G L ++ + ++D ND APE+ +TS + E+SPPGTVIAL+
Sbjct: 313 YRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILENSPPGTVIALLNV 372
Query: 372 RDRDSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNLTITATDGGKPP 431
+D+DSGENG+V C + + F L+ + NYYKL+T LDRE + YN+T+TATD G PP
Sbjct: 373 QDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYNITLTATDQGSPP 432
Query: 432 LSSSIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPDLGPSGQVSYSI 491
LS+ V L+++D NDN PVF +SY ++ ENNP GASI ++A DPD + V+YS+
Sbjct: 433 LSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDPDSKQNALVTYSL 492
Query: 492 VASDLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVL 551
++ + SYVS+++ +GV++A ++FD+EQ R EL + ARD G P LS+NVSL +
Sbjct: 493 TDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGDPPLSSNVSLSLF 552
Query: 552 VGDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQA 611
V D NDNAP +LYPAL DGS ++ PR+AEPGYLVTKVVAVD DSG NAWLSY +L+A
Sbjct: 553 VLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKA 612
Query: 612 SEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEV 671
SEPGLF++G TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT TL + ADS+ EV
Sbjct: 613 SEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPEV 672
Query: 672 LPDLSDRREPSDPQ-AKLQFYLVVALALISVLFFLAVILAISLRLRLSSRSDAWDCFQPG 730
L DL ++ + + L YLVVA+A +S +F + VI+ ++LRL +S + G
Sbjct: 673 LADLGSLESLANSETSDLSLYLVVAVAAVSCIFLVFVIVLLALRLWRWHKSRLLQASEGG 732
Query: 731 LSSKP-----GPGVLPNYSEGTLPYSYNLCVASQSAKTEFNFLNITPELVPAQDLVCDNA 785
L+ P G + + + T + +L SQ + F N L+ + C+ +
Sbjct: 733 LAGMPTSHFVGVDGVQAFLQ-TYSHEVSLIADSQKSHLIFPQPNYGDTLISQES--CEKS 789
Query: 786 SWEQNTNHGAAGVPFASDTILKQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTE 845
A + T +QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTE
Sbjct: 790 EPLLIAEDSAIILGKCDPTSNQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTE 849
Query: 846 MLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTN 905
MLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTN
Sbjct: 850 MLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTN 909
Query: 906 AAGKRDGKAPAGGNGNKKKSGKKEKK 931
AAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 910 AAGKRDGKAPAGGNGNKKKSGKKEKK 935
>gi|11056026 protocadherin gamma subfamily A, 4 isoform 1 precursor
[Homo sapiens]
Length = 931
Score = 908 bits (2347), Expect = 0.0
Identities = 484/938 (51%), Positives = 622/938 (66%), Gaps = 14/938 (1%)
Query: 1 MKASSGRCGLVRWLQVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRD 60
M A R R LQ+ L LL + QI YS+ EE + SVVGN+AKDLGL+ R+
Sbjct: 1 MAAPPARPDHTRLLQICL--LLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRE 58
Query: 61 LPARKLRVSAE--KEYFTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFY 118
L R +R+ + + F +NP SG L+ + RIDRE++C + P CV + + + E+ + I
Sbjct: 59 LAERGVRIVSRGRTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILR 118
Query: 119 IAVIVQDINDNTPLFKQTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYF 178
+ V + D+NDN P F + +K+ E+ PG FPL A D DVG NSLQ Y LN N YF
Sbjct: 119 VEVEIIDVNDNPPSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYF 178
Query: 179 DLAEKQTPDGRKYPELILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDN 238
L + DG KYPEL+L+ +LDREE ++H LVLTA DGGDP +SGT +I I + D NDN
Sbjct: 179 SLDVQSGADGIKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDN 238
Query: 239 PPVFSQDVYRVTLREDVPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKT 298
PVF+Q Y V++RE+VP G +L V ATD DEG N ++TYSF V +++ F LN +
Sbjct: 239 APVFTQPEYHVSVRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLS 298
Query: 299 GEITTKDDLDFEIASSYTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPE 358
G+IT LD+E + Y + +EA D L A + V +LD+ND APEV VTS+++ + E
Sbjct: 299 GDITILGGLDYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQE 358
Query: 359 DSPPGTVIALIKTRDRDSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEY 418
S PGTVIAL D DSG NG V C + N F L+ + NYY+L+T LDREE+ EY
Sbjct: 359 SSSPGTVIALFNVHDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEY 418
Query: 419 NLTITATDGGKPPLSSSIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASD 478
N+T+TATD G PPLS+ ++L + D+NDN P F SY ++ ENNP GASI ++A D
Sbjct: 419 NITVTATDQGTPPLSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQD 478
Query: 479 PDLGPSGQVSYSIVASDLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQG 538
PD G + +++YS+ + + SYVS+++ +G+++A +FD+EQ R +L + A D G
Sbjct: 479 PDSGDNARITYSLAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSG 538
Query: 539 SPALSANVSLRVLVGDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADS 598
P LS+NVSL + V D NDN P +LYP DGS ++ PR+A+ GYLVTKVVAVD DS
Sbjct: 539 DPPLSSNVSLSLFVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDS 598
Query: 599 GHNAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATA 658
G NAWLSY +L++SEPGLF++GL TGEVRTARAL DRDA +QRL+V V+D GQPPLSAT
Sbjct: 599 GQNAWLSYSLLKSSEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATV 658
Query: 659 TLHLIFADSLQEVLPDLSDRREPSDP-QAKLQFYLVVALALISVLFFLAVILAISLRLRL 717
TL + ADS+ +VL DL + +DP + L YLVVA+A +S +F V + ++L+LR
Sbjct: 659 TLTVAVADSIPDVLADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRR 718
Query: 718 SSRSDAWDCFQPGLSSKPGPGV--LPNYSEGTLPYSYNLCVASQSAKTEFNFLNITPELV 775
+S L+ P + YS+ + + + S K+ F +
Sbjct: 719 WHKSRLLHAEGSRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPS---- 774
Query: 776 PAQDLVCDNASWEQNTNHGAAG--VPFASDTILKQAPPNTDWRFSQAQRPGTSGSQNGDD 833
D + S E++ + D L+QAPPNTDWRFSQAQRPGTSGSQNGDD
Sbjct: 775 -YADTLISRESCEKSEPLLITQDLLETKGDPNLQQAPPNTDWRFSQAQRPGTSGSQNGDD 833
Query: 834 TGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQN 893
TGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQN
Sbjct: 834 TGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQN 893
Query: 894 VYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 931
VYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 894 VYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 931
>gi|11056030 protocadherin gamma subfamily A, 2 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 904 bits (2337), Expect = 0.0
Identities = 482/924 (52%), Positives = 625/924 (67%), Gaps = 13/924 (1%)
Query: 16 VLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRDLPARKLRVSAE--KE 73
VLL FLL+ A QIRYS+ EE+ + S VGN+AKDLGL L + +R+ + +
Sbjct: 14 VLLCFLLATLWEARAGQIRYSVREEIDRGSFVGNIAKDLGLEPLALAEQGVRIVSRGRSQ 73
Query: 74 YFTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIAVIVQDINDNTPLF 133
F +NP SG L+ ++RIDRE++C + C+L+F+ + E+ L I+ + V + DINDN P F
Sbjct: 74 LFALNPRSGSLVTANRIDREELCAQSAPCLLNFNILLEDKLTIYSVEVEITDINDNAPRF 133
Query: 134 KQTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDLAEKQTPDGRKYPE 193
++ LKI E+T PG PL A D+DVG N+LQ+Y LN N++F L ++ DG KYPE
Sbjct: 134 GVEELELKISETTTPGFRIPLKNAHDADVGENALQKYALNPNDHFSLDVRRGADGNKYPE 193
Query: 194 LILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPPVFSQDVYRVTLRE 253
L+L+ SLDREE ++H LVL A DGGDP SGT++I +KV DANDN PVF+Q YR+++ E
Sbjct: 194 LVLERSLDREEEAVHHLVLVASDGGDPVLSGTSRICVKVLDANDNAPVFTQPEYRISIPE 253
Query: 254 DVPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGEITTKDDLDFEIAS 313
+ G +L VTATD DEG A++ Y + F L +GE+T DLD+E A+
Sbjct: 254 NTLVGTRILTVTATDADEGYYAQVVYFLEKSPGETSEVFELKSTSGELTIIKDLDYEDAT 313
Query: 314 SYTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDSPPGTVIALIKTRD 373
+ + IEA+D L + V +LD ND APE +TS ++ + EDS PGT+I L D
Sbjct: 314 FHEIDIEAQDGPGLLTRAKVIVTVLDVNDNAPEFYMTSATSSVSEDSLPGTIIGLFNVHD 373
Query: 374 RDSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNLTITATDGGKPPLS 433
RDSG+N C + + F L+ S NYY+LVT ALDRE+ YN+T+TA DGG P LS
Sbjct: 374 RDSGQNAFTTCSLPEDLPFKLEKSVDNYYRLVTTRALDREQFSFYNITLTAKDGGNPSLS 433
Query: 434 SSIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPDLGPSGQVSYSIVA 493
+ + L ++D+NDNAP F +TSY ++ ENNP GAS+ ++A DPD + V+YS
Sbjct: 434 TDAHILLQVADINDNAPAFSRTSYSTYIPENNPRGASVFSVTAHDPDSNDNAHVTYSFAE 493
Query: 494 SDLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVG 553
++ + SY+S+++ +GV++A R+FD+EQLR ++ + ARD G+P LS+NVSL + V
Sbjct: 494 DTVQGAPLSSYISINSDTGVLYALRSFDYEQLRDLQVWVIARDSGNPPLSSNVSLSLFVL 553
Query: 554 DLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASE 613
D NDNAP +LYPA DGS ++ PR+AEPGYLVTKVVAVD DSG NAWLSYH+L+ASE
Sbjct: 554 DQNDNAPEILYPAFPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYHLLKASE 613
Query: 614 PGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLP 673
PGLFS+GL TGEVRTARAL DRDA +Q L+VA++D GQPPLSAT TL + AD + ++L
Sbjct: 614 PGLFSVGLHTGEVRTARALLDRDALKQSLVVAIQDHGQPPLSATVTLTVAVADRIPDILA 673
Query: 674 DLSDRREPSDP-QAKLQFYLVVALALISVLFFLAVILAISLRLRLSSRS---DAWDCFQP 729
DL + P + L YLVVA+A +S +F VI+ ++ RLR +S A
Sbjct: 674 DLGSLEPSAIPNDSDLTLYLVVAVAAVSCVFLAFVIVLLAHRLRRWHKSRLLQASGGSLT 733
Query: 730 GLSSKPGPGVLPNYSEGTLPYSYNLCVASQSAKTEFNFLNITPELVPAQDLVCDNASWEQ 789
G+ S GV YS+ + + + S K+ F P+ A L+ + ++
Sbjct: 734 GMQSSHFVGV-DGVRAFLQTYSHEVSLTADSRKSHLIF----PQPNYADTLISQESCEKK 788
Query: 790 NTNHGAAGV--PFASDTILKQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEML 847
+ + +T +QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEML
Sbjct: 789 DFLSAPQSLLEEEREETFSQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEML 848
Query: 848 QAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAA 907
QAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAA
Sbjct: 849 QAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAA 908
Query: 908 GKRDGKAPAGGNGNKKKSGKKEKK 931
GKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 909 GKRDGKAPAGGNGNKKKSGKKEKK 932
>gi|14270484 protocadherin gamma subfamily A, 8 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 900 bits (2325), Expect = 0.0
Identities = 474/912 (51%), Positives = 609/912 (66%), Gaps = 21/912 (2%)
Query: 32 QIRYSIPEELAKNSVVGNLAKDLGLSVRDLPARKLRVSAE--KEYFTVNPESGDLLVSDR 89
QIRYS+PEE K S VGN++KDLGL R L +R+ + + F +NP SG L+ + R
Sbjct: 30 QIRYSVPEETDKGSFVGNISKDLGLDPRKLAKHGVRIVSRGRTQLFALNPRSGSLITAGR 89
Query: 90 IDREQICGKQPLCVLDFDTVAENPLNIFYIAVIVQDINDNTPLFKQTKINLKIGESTKPG 149
IDRE++C + P C+++ +T+ E+ +F + + + DINDN P F+ + +KI E PG
Sbjct: 90 IDREELCAQSPRCLININTLVEDKGKLFGVEIEIIDINDNNPKFQVEDLEVKINEIAVPG 149
Query: 150 TTFPLDPALDSDVGPNSLQRYHLNDNEYFDLAEKQTPDGRKYPELILKHSLDREEHSLHQ 209
+PL A+D DVG NSLQ Y L+ N +F L + +G PEL+L+ +LDREE + H
Sbjct: 150 ARYPLPEAVDPDVGVNSLQSYQLSPNHHFSLDVQTGDNGAINPELVLERALDREEEAAHH 209
Query: 210 LVLTAVDGGDPPQSGTTQIRIKVTDANDNPPVFSQDVYRVTLREDVPPGFFVLQVTATDR 269
LVLTA DGG PP+S T +I + V D NDN PVF +YRV + E++PPG +L VTA+D
Sbjct: 210 LVLTASDGGKPPRSSTVRIHVTVLDTNDNAPVFPHPIYRVKVLENMPPGTRLLTVTASDP 269
Query: 270 DEGINAEITYSFHNVDEQVKHFFNLNEKTGEITTKDDLDFEIASSYTLSIEAKDPGDLAA 329
DEGIN ++ Y F ++E+ F LNE TGEI+ LD+E S Y + I+A+D G L
Sbjct: 270 DEGINGKVAYKFRKINEKQTPLFQLNENTGEISIAKSLDYEECSFYEMEIQAEDVGALLG 329
Query: 330 HCSIQVEILDDNDCAPEVIVTSVSTPLPEDSPPGTVIALIKTRDRDSGENGEVYCQVLGN 389
+ + + D ND PEVI+TS+ +P+ E+S PGTVIA + D+DSG+NG+V C N
Sbjct: 330 RTKLLISVEDVNDNRPEVIITSLFSPVLENSLPGTVIAFLSVHDQDSGKNGQVVCYTRDN 389
Query: 390 AKFILKSSSKNYYKLVTDGALDREEIPEYNLTITATDGGKPPLSSSIIVTLHISDVNDNA 449
F L+ S NYY+LVT LDRE + YN+T+ A+D G PPLS+ + LH++D+NDN
Sbjct: 390 LPFKLEKSIGNYYRLVTRKYLDRENVSIYNITVMASDLGTPPLSTETQIALHVADINDNP 449
Query: 450 PVFQQTSYMVHVAENNPPGASIAQISASDPDLGPSGQVSYSIVASDLKPREILSYVSVSA 509
P F SY ++ ENN GASI ++A DPD + QV+YS+ L+ + SY+S+++
Sbjct: 450 PTFPHASYSAYILENNLRGASIFSLTAHDPDSQENAQVTYSVTEDTLQGAPLSSYISINS 509
Query: 510 QSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGDLNDNAPRVLYPALGP 569
+GV++A ++FD+EQ+R +L + A D G P LS+N+SL + V D NDNAP +LYPAL
Sbjct: 510 DTGVLYALQSFDYEQIRDLQLLVTASDSGDPPLSSNMSLSLFVLDQNDNAPEILYPALPT 569
Query: 570 DGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGLFSLGLRTGEVRTA 629
DGS ++ PR+AE GYLVTKVVAVD DSG NAWLSY +L+ASEPGLFS+GL TGEVRTA
Sbjct: 570 DGSTGVELAPRSAERGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGLFSVGLHTGEVRTA 629
Query: 630 RALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPDLSDRREPSDP-QAKL 688
RAL DRDA +Q L+VAV+D GQPPLSAT TL + ADS+ EVL +L + DP + L
Sbjct: 630 RALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPEVLTELGSLKPSVDPNDSSL 689
Query: 689 QFYLVVALALISVLFFLAVILAISLRLRLSSRSDAWDCFQPGLSSKPGPGV--LPNYSEG 746
YLVVA+A IS +F V + + LRLR +S L P +
Sbjct: 690 TLYLVVAVAAISCVFLAFVAVLLGLRLRRWHKSRLLQDSGGRLVGVPASHFVGVEEVQAF 749
Query: 747 TLPYSYNLCVASQSAKTEFNF-------LNITPELVPAQDLVCDNASWEQNTNHGAAGVP 799
YS + + + S K+ F + I+ E D + + + + N G
Sbjct: 750 LQTYSQEVSLTADSRKSHLIFPQPNYADMLISQEGCEKNDSLLTSVDFHEYKNEADHG-- 807
Query: 800 FASDTILKQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAA 859
+QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAA
Sbjct: 808 -------QQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAA 860
Query: 860 DGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGN 919
DGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGN
Sbjct: 861 DGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGN 920
Query: 920 GNKKKSGKKEKK 931
GNKKKSGKKEKK
Sbjct: 921 GNKKKSGKKEKK 932
>gi|14277675 protocadherin gamma subfamily C, 3 isoform 1 precursor
[Homo sapiens]
Length = 934
Score = 843 bits (2178), Expect = 0.0
Identities = 468/944 (49%), Positives = 600/944 (63%), Gaps = 23/944 (2%)
Query: 1 MKASSGRCGLVRWLQVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRD 60
M + R GLV +V+ LL I Y IPEE K VGN+ +LGL +
Sbjct: 1 MVPEAWRSGLVSTGRVVGVLLLLGALNKASTVIHYEIPEEREKGFAVGNVVANLGLDLGS 60
Query: 61 LPARKLRV--SAEKEYFTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFY 118
L AR+ RV A + +F VN E+G++ V+DR+DRE++CG P C + + V ENPL +F
Sbjct: 61 LSARRFRVVSGASRRFFEVNRETGEMFVNDRLDREELCGTLPSCTVTLELVVENPLELFS 120
Query: 119 IAVIVQDINDNTPLFKQTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYF 178
+ V++QDINDN P F ++ L+I E+ PGT FPL+ A D DVG NSLQ Y L+ NEYF
Sbjct: 121 VEVVIQDINDNNPAFPTQEMKLEISEAVAPGTRFPLESAHDPDVGSNSLQTYELSRNEYF 180
Query: 179 DLAEKQTPDGRKYPELILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDN 238
L + D KY EL+L+ +LDRE QLVLTA+DGG P S + I IKV DANDN
Sbjct: 181 ALRVQTREDSTKYAELVLERALDREREPSLQLVLTALDGGTPALSASLPIHIKVLDANDN 240
Query: 239 PPVFSQDVYRVTLREDVPPGFFVLQVTATDRDEGINAEITYSFHNVDEQ-VKHFFNLNEK 297
PVF+Q +YR + ED P G V+QV ATD DEG N EI YSF + + V+ F L+
Sbjct: 241 APVFNQSLYRARVLEDAPSGTRVVQVLATDLDEGPNGEIIYSFGSHNRAGVRQLFALDLV 300
Query: 298 TGEITTKDDLDFEIASSYTLSIEAKDPG--DLAAHCSIQVEILDDNDCAPEVIVTSVSTP 355
TG +T K LDFE + + I+AKD G AHC + VE++D ND APE+ VTSV +P
Sbjct: 301 TGMLTIKGRLDFEDTKLHEIYIQAKDKGANPEGAHCKVLVEVVDVNDNAPEITVTSVYSP 360
Query: 356 LPEDSPPGTVIALIKTRDRDSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEI 415
+PED+P GTVIAL+ D D+GENG V C+V F L SS KNY+ L T LDRE +
Sbjct: 361 VPEDAPLGTVIALLSVTDLDAGENGLVTCEVPPGLPFSLTSSLKNYFTLKTSADLDRETV 420
Query: 416 PEYNLTITATDGGKPPLSSSIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQIS 475
PEYNL+ITA D G P LS+ IV + +SD+NDN P Q+SY V++ ENN PGA I +S
Sbjct: 421 PEYNLSITARDAGTPSLSALTIVRVQVSDINDNPPQSSQSSYDVYIEENNLPGAPILNLS 480
Query: 476 ASDPDLGPSGQVSYSIVASDLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQAR 535
DPD + ++S+ ++ + + Y +++ +G+V + D+E R FELT
Sbjct: 481 VWDPDAPQNARLSFFLLEQGAETGLVGRYFTINRDNGIVSSLVPLDYEDRREFELTAHIS 540
Query: 536 DQGSPALSANVSLRVLVGDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVD 595
D G+P L+ N+S+ + V D NDNAP+VLYP P GS++ +M+PR G+LV++VV D
Sbjct: 541 DGGTPVLATNISVNIFVTDRNDNAPQVLYPR--PGGSSV-EMLPRGTSAGHLVSRVVGWD 597
Query: 596 ADSGHNAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLS 655
AD+GHNAWLSY +L + LF++GL TG++ TAR + D D+ RQ L V ++D G+P LS
Sbjct: 598 ADAGHNAWLSYSLLGSPNQSLFAIGLHTGQISTARPVQDTDSPRQTLTVLIKDNGEPSLS 657
Query: 656 ATATLHLIFADSLQEVLPDLSDRREPSDPQAKLQFYLVVALALISVLFFLAVILAISLRL 715
TATL + + E + P + + L FYL+++L L+SV F + V I ++
Sbjct: 658 TTATLTVSVTEDSPEARAEFPSGSAPREQKKNLTFYLLLSLILVSVGFVVTVFGVIIFKV 717
Query: 716 RLSSRS-DAWDCFQPGLSSKPGPGVLPNYSEGTL--PYSYNLCVASQSAKTEFNFLN--- 769
+S D + L PGP + + G L P+ Y+ + ++ L
Sbjct: 718 YKWKQSRDLYRAPVSSLYRTPGPSLHADAVRGGLMSPHLYHQVYLTTDSRRSDPLLKKPG 777
Query: 770 ITPELVPAQDLV--CDNASWEQNTNHGAAGVPFASDTILKQAPPNTDWRFSQAQRPGTSG 827
L Q+ + CD + Q GA P +QAPPNTDWRFSQAQRPGTSG
Sbjct: 778 AASPLASRQNTLRSCDPVFYRQVL--GAESAPPG-----QQAPPNTDWRFSQAQRPGTSG 830
Query: 828 SQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHV 887
SQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHV
Sbjct: 831 SQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHV 890
Query: 888 PDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 931
PDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 891 PDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 934
>gi|11128023 protocadherin gamma subfamily C, 5 isoform 1 precursor
[Homo sapiens]
Length = 944
Score = 811 bits (2095), Expect = 0.0
Identities = 451/928 (48%), Positives = 590/928 (63%), Gaps = 41/928 (4%)
Query: 32 QIRYSIPEELAKNSVVGNLAKDLGLSVRDLPARKLRVSAEKE--YFTVNPESGDLLVSDR 89
Q+RYS+ EE ++VGN+A+DLGL + DL +R+L++ +E+ YF+++ SG L V+ +
Sbjct: 30 QLRYSVVEESEPGTLVGNVAQDLGLKMTDLLSRRLQLGSEENGRYFSLSLMSGALAVNQK 89
Query: 90 IDREQICGKQPLCVLDFDTVAENPLNIFYIAVIVQDINDNTPLFKQTKINLKIGESTKPG 149
IDRE +CG C+L V E+PL + + V + D+NDN+P F + ++I ES G
Sbjct: 90 IDRESLCGASTSCLLPVQVVTEHPLELIRVEVEILDLNDNSPSFATPEREMRISESAASG 149
Query: 150 TTFPLDPALDSDVGPNSLQRYHLNDNEYFDLAEKQTPDGRKYPELILKHSLDREEHSLHQ 209
FPLD A D DVG N++ Y L+ N +F L K DG+ +PEL+L+ LDRE + HQ
Sbjct: 150 ARFPLDSAQDPDVGTNTVSFYTLSPNSHFSLNVKTLKDGKPFPELVLEQQLDREAQARHQ 209
Query: 210 LVLTAVDGGDPPQSGTTQIRIKVTDANDNPPVFSQDVYRVTLREDVPPGFFVLQVTATDR 269
LVLTAVDGG P +SGTT I + V D NDN P F V RV + E+ P G +L++ ATD
Sbjct: 210 LVLTAVDGGTPARSGTTLISVIVLDINDNAPTFQSSVLRVGIPENAPIGTLLLRLNATDP 269
Query: 270 DEGINAEITYSF-HNVDEQVKHFFNLNEKTGEITTKDDLDFEIASSYTLSIEAKDPGDLA 328
DEG N ++ YSF + E V++ F L+ +G I +DFE + Y + A+D G A
Sbjct: 270 DEGTNGQLDYSFGDHTSEAVRNLFGLDPSSGAIHVLGPIDFEESRFYEIHARARDQGQPA 329
Query: 329 --AHCSIQVEILDDNDCAPEVIVTSVSTPLPEDSPPGTVIALIKTRDRDSGENGEVYCQV 386
HC IQV++ D ND APEV++ S++ P+ E +P GTV+ L RDRDSG NGEV +
Sbjct: 330 MEGHCVIQVDVGDVNDNAPEVLLASLANPVLESTPVGTVVGLFNVRDRDSGRNGEVSLDI 389
Query: 387 LGNAKFILKSSSKNYYKLVTDGALDREEIPEYNLTITATDGGKPPLSSSIIVTLHISDVN 446
+ F +K S +N+Y L+T LDRE Y + + A+D G P L + + L+ISDVN
Sbjct: 390 SPDLPFQIKPS-ENHYSLLTSQPLDREATSHYIIELLASDAGSPSLHKHLTIRLNISDVN 448
Query: 447 DNAPVFQQTSYMVHVAENNPPGASIAQISASDPDLGPSGQVSYSIVASDLKPREILSYVS 506
DNAP F Q Y ++ EN PPG+ + ++ASDPD G + +++YSIV + ++ S+V
Sbjct: 449 DNAPRFNQQLYTAYILENRPPGSLLCTVAASDPDTGDNARLTYSIVGNQVQGAPASSFVY 508
Query: 507 VSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGDLNDNAPRVLYPA 566
V+ + G +FAQR FD+E L+ ++ + RD GSP L AN SL V V D NDNAP VL+P
Sbjct: 509 VNPEDGRIFAQRTFDYELLQMLQIVVGVRDSGSPPLHANTSLHVFVLDENDNAPAVLHPR 568
Query: 567 LGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVL-QASEPGLFSLGLRTGE 625
+ SA +PR+A PG LVTKV AVDAD+GHNAWLSY +L Q++ PGLF + TGE
Sbjct: 569 PDWEHSAP-QRLPRSAPPGSLVTKVTAVDADAGHNAWLSYSLLPQSTAPGLFLVSTHTGE 627
Query: 626 VRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPDLSDRREPSDPQ 685
VRTARAL + D+ Q+++V VRD G P LS+TAT+ L+ D E +P SD +
Sbjct: 628 VRTARALLEDDSDTQQVVVLVRDNGDPSLSSTATVLLVLEDEDPEEMPKSSDFLIHPPER 687
Query: 686 AKLQFYLVVALALISVLFFLAVILAISLRLRLSSRSDAW--------DCFQPGLSSKPGP 737
+ L YL+VALA +S+L + + L+ ++ D D P + P
Sbjct: 688 SDLTLYLIVALATVSLLSLVTFTFLSAKCLQGNADGDGGGGQCCRRQDSPSPDFYKQSSP 747
Query: 738 GVLPNYSEGTLPYS-------------YNLCVASQSAKTEFNFLN-ITPELVPAQDLVCD 783
+ + S+GTL Y Y C + S ++F FL ++ + A L D
Sbjct: 748 NLQVS-SDGTLKYMEVTLRPTDSQSHCYRTCFSPASDGSDFTFLRPLSVQQPTALALEPD 806
Query: 784 NASWEQNTNHGAAGVPFASDTILKQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFD 843
NT + +QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFD
Sbjct: 807 AIRSRSNTLRERS----------QQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFD 856
Query: 844 TEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATL 903
TEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATL
Sbjct: 857 TEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATL 916
Query: 904 TNAAGKRDGKAPAGGNGNKKKSGKKEKK 931
TNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 917 TNAAGKRDGKAPAGGNGNKKKSGKKEKK 944
>gi|14196474 protocadherin gamma subfamily A, 6 isoform 2 precursor
[Homo sapiens]
Length = 818
Score = 699 bits (1804), Expect = 0.0
Identities = 365/725 (50%), Positives = 496/725 (68%), Gaps = 3/725 (0%)
Query: 15 QVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRDLPARKLRVSAE--K 72
QVLL LL GA QIRYSIPEEL K S VGN+ KDLGL ++L +R+ +
Sbjct: 13 QVLLLTLLGTLWGAAAAQIRYSIPEELEKGSFVGNIVKDLGLEPQELAEHGVRIVSRGRM 72
Query: 73 EYFTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIAVIVQDINDNTPL 132
+ F++NP +G L+ + RIDRE++C + P C++ F+ + E+ LN++ + V + DINDNTP
Sbjct: 73 QLFSLNPRNGSLVTAGRIDREELCAQSPRCLVSFNILVEDKLNLYPVEVEIVDINDNTPR 132
Query: 133 FKQTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDLAEKQTPDGRKYP 192
F + ++ +KI E+ P + FPL D DVG NSLQ + L+ N +F + + G KYP
Sbjct: 133 FLKEELEVKILENAAPSSRFPLMEVYDPDVGMNSLQGFKLSGNSHFSVDVQSEAHGPKYP 192
Query: 193 ELILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPPVFSQDVYRVTLR 252
EL+L+ +LDRE ++++LVLTA+DGGDP +S QI + V D NDN P+F+Q VYRV++
Sbjct: 193 ELVLEGTLDREGEAVYRLVLTAMDGGDPVRSSVAQILVTVLDVNDNTPMFTQPVYRVSVP 252
Query: 253 EDVPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGEITTKDDLDFEIA 312
E++P G VL VTATD+DEG++ E+TYSF + E++ F LN TGEI+T +LD+E +
Sbjct: 253 ENLPVGTPVLAVTATDQDEGVHGEVTYSFVKITEKISQIFCLNVLTGEISTSANLDYEDS 312
Query: 313 SSYTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDSPPGTVIALIKTR 372
S Y L +EA+D L + + ILD ND PEV+VTS S + E +PPGTVIAL +
Sbjct: 313 SFYELGVEARDGPGLRDRAKVLITILDVNDNVPEVVVTSGSRTIAESAPPGTVIALFQVF 372
Query: 373 DRDSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNLTITATDGGKPPL 432
DRDSG NG V C + + F L+ S NYY+LVT+ ALDREE+ YN+T+TATD G PPL
Sbjct: 373 DRDSGLNGLVTCSIPRSLPFELEKSVGNYYRLVTNAALDREEVFLYNITVTATDKGTPPL 432
Query: 433 SSSIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPDLGPSGQVSYSIV 492
S+ I++L+++D NDN P F +SY V+V ENNP GASI ++A DPD+ + QVSYS+
Sbjct: 433 STETIISLNVADTNDNPPTFPHSSYSVYVLENNPRGASIFSVNALDPDVDQNAQVSYSLA 492
Query: 493 ASDLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLV 552
L+ + SYVS+++ +G+++A R+FD+EQLR +L + A D G P LS+NVSL + V
Sbjct: 493 EDTLQGAPLSSYVSINSDTGILYALRSFDYEQLRDLQLWVTASDSGDPPLSSNVSLSLFV 552
Query: 553 GDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQAS 612
D NDNAP +LYPAL DGS ++ PR+AEPGYLVTKVVAVD DSG NAWLSY +L+AS
Sbjct: 553 LDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKAS 612
Query: 613 EPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVL 672
EPGLFS+GL TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT TL + AD + ++L
Sbjct: 613 EPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRIPDIL 672
Query: 673 PDLSDRREPSDP-QAKLQFYLVVALALISVLFFLAVILAISLRLRLSSRSDAWDCFQPGL 731
DL + P + L YLVVA+A +S +F VI+ ++LRL+ +S GL
Sbjct: 673 ADLGSLEPSAKPNDSDLTLYLVVAVAAVSCVFLAFVIVLLALRLQRWHKSRLLQASGGGL 732
Query: 732 SSKPG 736
+S PG
Sbjct: 733 ASMPG 737
>gi|14196465 protocadherin gamma subfamily A, 3 isoform 2 precursor
[Homo sapiens]
Length = 829
Score = 691 bits (1783), Expect = 0.0
Identities = 352/708 (49%), Positives = 483/708 (68%), Gaps = 3/708 (0%)
Query: 32 QIRYSIPEELAKNSVVGNLAKDLGLSVRDLPARKLRVSAE--KEYFTVNPESGDLLVSDR 89
QIRYS+ EEL K S VGN+A DLGL R+L R +R+ + + F++NP+SG L+ ++R
Sbjct: 30 QIRYSVSEELDKGSFVGNIANDLGLEPRELAERGVRIVSRGRTQLFSLNPQSGSLVTAER 89
Query: 90 IDREQICGKQPLCVLDFDTVAENPLNIFYIAVIVQDINDNTPLFKQTKINLKIGESTKPG 149
IDRE++C + PLC++ + + E+ L IF + + ++DINDN P F ++ +KIGE T PG
Sbjct: 90 IDREELCAQIPLCLVKINILVEDKLKIFEVEIEIKDINDNAPNFPTEELEIKIGELTVPG 149
Query: 150 TTFPLDPALDSDVGPNSLQRYHLNDNEYFDLAEKQTPDGRKYPELILKHSLDREEHSLHQ 209
T FP+ A D DVG NSLQ Y L+ N+YF LA +G KYPEL+L+ +LDRE+ +HQ
Sbjct: 150 TRFPIKTAFDPDVGINSLQNYKLSPNDYFSLAVNSVSEGAKYPELVLERALDREKKEIHQ 209
Query: 210 LVLTAVDGGDPPQSGTTQIRIKVTDANDNPPVFSQDVYRVTLREDVPPGFFVLQVTATDR 269
LVL A DGGDP SG I++ V DANDNPP+F+Q YRV++ E+VP G +L V ATD
Sbjct: 210 LVLVASDGGDPVHSGNLHIQVIVLDANDNPPMFTQPEYRVSVWENVPVGTRLLTVNATDP 269
Query: 270 DEGINAEITYSFHNVDEQVKHFFNLNEKTGEITTKDDLDFEIASSYTLSIEAKDPGDLAA 329
DEG NA+++Y + ++ F+LN +GE++ LD+E A Y + IEA+D L +
Sbjct: 270 DEGFNAQVSYILDKMPGKIAEIFHLNSVSGEVSILKSLDYEDAMFYEIKIEAQDGPGLLS 329
Query: 330 HCSIQVEILDDNDCAPEVIVTSVSTPLPEDSPPGTVIALIKTRDRDSGENGEVYCQVLGN 389
I V +LD ND APE+ +TS+++ +PE+ G IALI DRDSG+NG+V VLGN
Sbjct: 330 RAKILVTVLDVNDNAPEITITSLTSSVPEEGTVGREIALIDVHDRDSGQNGQVEVFVLGN 389
Query: 390 AKFILKSSSKNYYKLVTDGALDREEIPEYNLTITATDGGKPPLSSSIIVTLHISDVNDNA 449
F L+ S YY+LVT +LDRE+I EYN+++ A+DGG PPLS+ +TLH+ D+NDN
Sbjct: 390 LPFKLEKSIDQYYRLVTATSLDREQISEYNISLRASDGGSPPLSTETHITLHVIDINDNP 449
Query: 450 PVFQQTSYMVHVAENNPPGASIAQISASDPDLGPSGQVSYSIVASDLKPREILSYVSVSA 509
P F SY ++ ENNP GASI ++A DPD + +++Y++ L+ + S+VS+++
Sbjct: 450 PTFPHLSYSAYIPENNPRGASIFSVTAQDPDSNNNARITYALTEDTLQGAPLSSFVSINS 509
Query: 510 QSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGDLNDNAPRVLYPALGP 569
+GV++A R+FD+EQ R +L + A D G+P LS+NVSL + V D NDNAP +LYPAL
Sbjct: 510 NTGVLYALRSFDYEQFRDLKLLVTASDSGNPPLSSNVSLNLFVLDQNDNAPEILYPALPT 569
Query: 570 DGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGLFSLGLRTGEVRTA 629
DGS ++ PR+AEPGYLVTKVVAVD DSG NAWLSY +L+ASEPGLFS+GL TGEVRTA
Sbjct: 570 DGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGLFSVGLHTGEVRTA 629
Query: 630 RALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPDLSDRREPSDP-QAKL 688
RAL DRDA +Q L+VAV+D GQPPLSAT TL + AD + ++L DL + P + L
Sbjct: 630 RALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRIPDILADLGSLEPSAKPNDSDL 689
Query: 689 QFYLVVALALISVLFFLAVILAISLRLRLSSRSDAWDCFQPGLSSKPG 736
YLVVA+A +S +F VI+ ++LRLR +S GL+S PG
Sbjct: 690 TLYLVVAVAAVSCVFLAFVIVLLALRLRRWHKSRLLQASGGGLASTPG 737
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.133 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,059,575
Number of Sequences: 37866
Number of extensions: 1804591
Number of successful extensions: 10367
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 3304
Number of HSP's gapped (non-prelim): 690
length of query: 931
length of database: 18,247,518
effective HSP length: 112
effective length of query: 819
effective length of database: 14,006,526
effective search space: 11471344794
effective search space used: 11471344794
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.