Search of human proteins with 11128019

Search of human proteins with 11128019

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|11128019 cytochrome c [Homo sapiens]
         (105 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|11128019 cytochrome c [Homo sapiens]                               222   6e-59
gi|4885399 structural maintenance of chromosomes 3 [Homo sapiens]      30   0.53 
gi|197116386 5'-nucleotidase domain containing 2 isoform 1 [Homo...    28   1.2  
gi|12597653 5'-nucleotidase domain containing 2 isoform 2 [Homo ...    28   1.2  
gi|110624787 5'-3' exoribonuclease 1 isoform b [Homo sapiens]          28   1.5  
gi|110624792 5'-3' exoribonuclease 1 isoform a [Homo sapiens]          28   1.5  
gi|239757009 PREDICTED: ankyrin repeat domain 20 family, member ...    27   3.4  
gi|239751523 PREDICTED: ankyrin repeat domain 20 family, member ...    27   3.4  
gi|116008442 zinc finger CCCH-type containing 13 [Homo sapiens]        26   5.9  

>gi|11128019 cytochrome c [Homo sapiens]
          Length = 105

 Score =  222 bits (565), Expect = 6e-59
 Identities = 105/105 (100%), Positives = 105/105 (100%)

Query: 1   MGDVEKGKKIFIMKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGYSYTAANKNKGIIW 60
           MGDVEKGKKIFIMKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGYSYTAANKNKGIIW
Sbjct: 1   MGDVEKGKKIFIMKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGYSYTAANKNKGIIW 60

Query: 61  GEDTLMEYLENPKKYIPGTKMIFVGIKKKEERADLIAYLKKATNE 105
           GEDTLMEYLENPKKYIPGTKMIFVGIKKKEERADLIAYLKKATNE
Sbjct: 61  GEDTLMEYLENPKKYIPGTKMIFVGIKKKEERADLIAYLKKATNE 105


>gi|4885399 structural maintenance of chromosomes 3 [Homo sapiens]
          Length = 1217

 Score = 29.6 bits (65), Expect = 0.53
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 52  ANKNKGIIWGEDTLMEYLENPKKYIPGTKMIFVGIKKKEERADLIAYLKKATNE 105
           + + K ++     L+E +E  +K +  T+  F  +K+KEER   IA L +AT E
Sbjct: 320 SEQRKRLLKERQKLLEKIEEKQKELAETEPKFNSVKEKEERG--IARLAQATQE 371


>gi|197116386 5'-nucleotidase domain containing 2 isoform 1 [Homo
           sapiens]
          Length = 557

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 4   VEKGKKIFIMKCSQCHTVEKGGKHKTGPNLHGLF 37
           V  GK++F++  S    V+KG +H  GP+   LF
Sbjct: 295 VAHGKQLFLITNSPFSFVDKGMRHMVGPDWRQLF 328


>gi|12597653 5'-nucleotidase domain containing 2 isoform 2 [Homo
           sapiens]
          Length = 520

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 4   VEKGKKIFIMKCSQCHTVEKGGKHKTGPNLHGLF 37
           V  GK++F++  S    V+KG +H  GP+   LF
Sbjct: 258 VAHGKQLFLITNSPFSFVDKGMRHMVGPDWRQLF 291


>gi|110624787 5'-3' exoribonuclease 1 isoform b [Homo sapiens]
          Length = 1693

 Score = 28.1 bits (61), Expect = 1.5
 Identities = 15/46 (32%), Positives = 21/46 (45%)

Query: 25  GKHKTGPNLHGLFGRKTGQAPGYSYTAANKNKGIIWGEDTLMEYLE 70
           G HK    L+  F +K  + PGY+    ++       E  L EYLE
Sbjct: 947 GDHKANVGLNLKFNKKNEEVPGYTKKVGSEWMYSSAAEQLLAEYLE 992


>gi|110624792 5'-3' exoribonuclease 1 isoform a [Homo sapiens]
          Length = 1706

 Score = 28.1 bits (61), Expect = 1.5
 Identities = 15/46 (32%), Positives = 21/46 (45%)

Query: 25  GKHKTGPNLHGLFGRKTGQAPGYSYTAANKNKGIIWGEDTLMEYLE 70
           G HK    L+  F +K  + PGY+    ++       E  L EYLE
Sbjct: 947 GDHKANVGLNLKFNKKNEEVPGYTKKVGSEWMYSSAAEQLLAEYLE 992


>gi|239757009 PREDICTED: ankyrin repeat domain 20 family, member A5
           [Homo sapiens]
          Length = 823

 Score = 26.9 bits (58), Expect = 3.4
 Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 6/79 (7%)

Query: 26  KHKTGPNLHGLFGRKTGQAPGYSYTAANKNKGIIWGEDTLMEYLENPKKYIPGTKMIFVG 85
           +H   PNL  ++G        YS + +   K +  GE+  +E L+        T ++F  
Sbjct: 121 EHGANPNLKDIYGNTALHYAVYSESTSLAEKLLFHGEN--IEALDKDS----NTPLLFAI 174

Query: 86  IKKKEERADLIAYLKKATN 104
           I KKE+  + +   K +T+
Sbjct: 175 ICKKEKMVEFLLKNKASTH 193


>gi|239751523 PREDICTED: ankyrin repeat domain 20 family, member A5
           [Homo sapiens]
          Length = 823

 Score = 26.9 bits (58), Expect = 3.4
 Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 6/79 (7%)

Query: 26  KHKTGPNLHGLFGRKTGQAPGYSYTAANKNKGIIWGEDTLMEYLENPKKYIPGTKMIFVG 85
           +H   PNL  ++G        YS + +   K +  GE+  +E L+        T ++F  
Sbjct: 121 EHGANPNLKDIYGNTALHYAVYSESTSLAEKLLFHGEN--IEALDKDS----NTPLLFAI 174

Query: 86  IKKKEERADLIAYLKKATN 104
           I KKE+  + +   K +T+
Sbjct: 175 ICKKEKMVEFLLKNKASTH 193


>gi|116008442 zinc finger CCCH-type containing 13 [Homo sapiens]
          Length = 1564

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 74   KYIPGTKMIFVGIKKKEERADLIAYLKK 101
            K+ PG  M+ VGI KK   ++L A +K+
Sbjct: 1521 KFTPGAVMLRVGISKKLAGSELFAKVKE 1548


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,414,177
Number of Sequences: 37866
Number of extensions: 186530
Number of successful extensions: 196
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 192
Number of HSP's gapped (non-prelim): 9
length of query: 105
length of database: 18,247,518
effective HSP length: 76
effective length of query: 29
effective length of database: 15,369,702
effective search space: 445721358
effective search space used: 445721358
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.