Search of human proteins with 169171852

Search of human proteins with 169171852

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169171852 PREDICTED: similar to vacuolar protein sorting 35
[Homo sapiens]
         (363 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169171852 PREDICTED: similar to vacuolar protein sorting 35 [...   732   0.0  
gi|17999541 vacuolar protein sorting 35 [Homo sapiens]                660   0.0  
gi|115385972 chemokine-like factor superfamily 3 [Homo sapiens]        36   0.062
gi|32130528 chemokine-like factor superfamily 3 [Homo sapiens]         36   0.062
gi|32130526 chemokine-like factor superfamily 3 [Homo sapiens]         36   0.062
gi|21389401 chemokine-like factor superfamily 3 [Homo sapiens]         36   0.062
gi|34419635 heat shock 70kDa protein 6 (HSP70B') [Homo sapiens]        30   2.6  
gi|82880656 coiled-coil domain containing 46 isoform a [Homo sap...    30   2.6  
gi|4826954 parathyroid hormone 2 receptor precursor [Homo sapiens]     30   3.4  
gi|115511012 coiled-coil domain containing 136 [Homo sapiens]          30   3.4  
gi|148727286 acyl-CoA thioesterase 2 [Homo sapiens]                    30   4.4  
gi|119393899 GLI-Kruppel family member GLI3 [Homo sapiens]             29   5.8  
gi|39812492 TH1-like protein [Homo sapiens]                            29   7.5  
gi|53729325 nuclear receptor subfamily 6, group A, member 1 isof...    29   7.5  
gi|53729327 nuclear receptor subfamily 6, group A, member 1 isof...    29   7.5  

>gi|169171852 PREDICTED: similar to vacuolar protein sorting 35
           [Homo sapiens]
          Length = 363

 Score =  732 bits (1890), Expect = 0.0
 Identities = 363/363 (100%), Positives = 363/363 (100%)

Query: 1   MPPKHYAGHELLQNVEVIKCNCVKKNKKVDAAASIKDQPDQPVEDPDPEDFADEQSLVGR 60
           MPPKHYAGHELLQNVEVIKCNCVKKNKKVDAAASIKDQPDQPVEDPDPEDFADEQSLVGR
Sbjct: 1   MPPKHYAGHELLQNVEVIKCNCVKKNKKVDAAASIKDQPDQPVEDPDPEDFADEQSLVGR 60

Query: 61  FIHLLRSEDPDQQYLILNTARKHFGAGGNQRIRFTLPPLVFAAYQLAFRYKENSKVDDKW 120
           FIHLLRSEDPDQQYLILNTARKHFGAGGNQRIRFTLPPLVFAAYQLAFRYKENSKVDDKW
Sbjct: 61  FIHLLRSEDPDQQYLILNTARKHFGAGGNQRIRFTLPPLVFAAYQLAFRYKENSKVDDKW 120

Query: 121 EKKCQKIFSFAHQTISALIKAELAELPLRLFLQGALAAGEIGFENHETVAYEFMSQAFSL 180
           EKKCQKIFSFAHQTISALIKAELAELPLRLFLQGALAAGEIGFENHETVAYEFMSQAFSL
Sbjct: 121 EKKCQKIFSFAHQTISALIKAELAELPLRLFLQGALAAGEIGFENHETVAYEFMSQAFSL 180

Query: 181 YEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASKLLKKPDQGRAVSTC 240
           YEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASKLLKKPDQGRAVSTC
Sbjct: 181 YEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASKLLKKPDQGRAVSTC 240

Query: 241 AHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMDPSLQVQLFIEILNRYIYFYEK 300
           AHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMDPSLQVQLFIEILNRYIYFYEK
Sbjct: 241 AHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMDPSLQVQLFIEILNRYIYFYEK 300

Query: 301 ENDAVTIQVLNQLIQKIREDLPNLESSEETEQINKHFHNTLEHLRLRRESPESEGPIYEG 360
           ENDAVTIQVLNQLIQKIREDLPNLESSEETEQINKHFHNTLEHLRLRRESPESEGPIYEG
Sbjct: 301 ENDAVTIQVLNQLIQKIREDLPNLESSEETEQINKHFHNTLEHLRLRRESPESEGPIYEG 360

Query: 361 LIL 363
           LIL
Sbjct: 361 LIL 363


>gi|17999541 vacuolar protein sorting 35 [Homo sapiens]
          Length = 796

 Score =  660 bits (1703), Expect = 0.0
 Identities = 328/329 (99%), Positives = 329/329 (100%)

Query: 35  IKDQPDQPVEDPDPEDFADEQSLVGRFIHLLRSEDPDQQYLILNTARKHFGAGGNQRIRF 94
           I+DQPDQPVEDPDPEDFADEQSLVGRFIHLLRSEDPDQQYLILNTARKHFGAGGNQRIRF
Sbjct: 468 IQDQPDQPVEDPDPEDFADEQSLVGRFIHLLRSEDPDQQYLILNTARKHFGAGGNQRIRF 527

Query: 95  TLPPLVFAAYQLAFRYKENSKVDDKWEKKCQKIFSFAHQTISALIKAELAELPLRLFLQG 154
           TLPPLVFAAYQLAFRYKENSKVDDKWEKKCQKIFSFAHQTISALIKAELAELPLRLFLQG
Sbjct: 528 TLPPLVFAAYQLAFRYKENSKVDDKWEKKCQKIFSFAHQTISALIKAELAELPLRLFLQG 587

Query: 155 ALAAGEIGFENHETVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHE 214
           ALAAGEIGFENHETVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHE
Sbjct: 588 ALAAGEIGFENHETVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHE 647

Query: 215 PLRTQCALAASKLLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIA 274
           PLRTQCALAASKLLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIA
Sbjct: 648 PLRTQCALAASKLLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIA 707

Query: 275 NQCMDPSLQVQLFIEILNRYIYFYEKENDAVTIQVLNQLIQKIREDLPNLESSEETEQIN 334
           NQCMDPSLQVQLFIEILNRYIYFYEKENDAVTIQVLNQLIQKIREDLPNLESSEETEQIN
Sbjct: 708 NQCMDPSLQVQLFIEILNRYIYFYEKENDAVTIQVLNQLIQKIREDLPNLESSEETEQIN 767

Query: 335 KHFHNTLEHLRLRRESPESEGPIYEGLIL 363
           KHFHNTLEHLRLRRESPESEGPIYEGLIL
Sbjct: 768 KHFHNTLEHLRLRRESPESEGPIYEGLIL 796


>gi|115385972 chemokine-like factor superfamily 3 [Homo sapiens]
          Length = 182

 Score = 35.8 bits (81), Expect = 0.062
 Identities = 35/137 (25%), Positives = 53/137 (38%), Gaps = 14/137 (10%)

Query: 39  PDQPVEDPDPEDFADEQSLVGRFIHLLRSEDPDQQYLILNTARKHFGAGGNQRIRFTL-- 96
           P  P  DPDPE     +   G  +  LR+  P + +L     R      G   I F    
Sbjct: 3   PPDPDPDPDPEPAGGSRP--GPAVPGLRALLPARAFLCSLKGRLLLAESGLSFITFICYV 60

Query: 97  ---------PPLVFAAYQLAFRYKENSKVDDKWEKKCQKIFSFAHQTISALIKAELAELP 147
                     PL+     L F + +  +++DKW+  C  +  F     +ALI   ++   
Sbjct: 61  ASSASAFLTAPLLEFLLALYFLFADAMQLNDKWQGLCWPMMDFLRCVTAALIYFAISITA 120

Query: 148 LRLFLQGA-LAAGEIGF 163
           +  +  GA  AAG  GF
Sbjct: 121 IAKYSDGASKAAGVFGF 137


>gi|32130528 chemokine-like factor superfamily 3 [Homo sapiens]
          Length = 182

 Score = 35.8 bits (81), Expect = 0.062
 Identities = 35/137 (25%), Positives = 53/137 (38%), Gaps = 14/137 (10%)

Query: 39  PDQPVEDPDPEDFADEQSLVGRFIHLLRSEDPDQQYLILNTARKHFGAGGNQRIRFTL-- 96
           P  P  DPDPE     +   G  +  LR+  P + +L     R      G   I F    
Sbjct: 3   PPDPDPDPDPEPAGGSRP--GPAVPGLRALLPARAFLCSLKGRLLLAESGLSFITFICYV 60

Query: 97  ---------PPLVFAAYQLAFRYKENSKVDDKWEKKCQKIFSFAHQTISALIKAELAELP 147
                     PL+     L F + +  +++DKW+  C  +  F     +ALI   ++   
Sbjct: 61  ASSASAFLTAPLLEFLLALYFLFADAMQLNDKWQGLCWPMMDFLRCVTAALIYFAISITA 120

Query: 148 LRLFLQGA-LAAGEIGF 163
           +  +  GA  AAG  GF
Sbjct: 121 IAKYSDGASKAAGVFGF 137


>gi|32130526 chemokine-like factor superfamily 3 [Homo sapiens]
          Length = 182

 Score = 35.8 bits (81), Expect = 0.062
 Identities = 35/137 (25%), Positives = 53/137 (38%), Gaps = 14/137 (10%)

Query: 39  PDQPVEDPDPEDFADEQSLVGRFIHLLRSEDPDQQYLILNTARKHFGAGGNQRIRFTL-- 96
           P  P  DPDPE     +   G  +  LR+  P + +L     R      G   I F    
Sbjct: 3   PPDPDPDPDPEPAGGSRP--GPAVPGLRALLPARAFLCSLKGRLLLAESGLSFITFICYV 60

Query: 97  ---------PPLVFAAYQLAFRYKENSKVDDKWEKKCQKIFSFAHQTISALIKAELAELP 147
                     PL+     L F + +  +++DKW+  C  +  F     +ALI   ++   
Sbjct: 61  ASSASAFLTAPLLEFLLALYFLFADAMQLNDKWQGLCWPMMDFLRCVTAALIYFAISITA 120

Query: 148 LRLFLQGA-LAAGEIGF 163
           +  +  GA  AAG  GF
Sbjct: 121 IAKYSDGASKAAGVFGF 137


>gi|21389401 chemokine-like factor superfamily 3 [Homo sapiens]
          Length = 182

 Score = 35.8 bits (81), Expect = 0.062
 Identities = 35/137 (25%), Positives = 53/137 (38%), Gaps = 14/137 (10%)

Query: 39  PDQPVEDPDPEDFADEQSLVGRFIHLLRSEDPDQQYLILNTARKHFGAGGNQRIRFTL-- 96
           P  P  DPDPE     +   G  +  LR+  P + +L     R      G   I F    
Sbjct: 3   PPDPDPDPDPEPAGGSRP--GPAVPGLRALLPARAFLCSLKGRLLLAESGLSFITFICYV 60

Query: 97  ---------PPLVFAAYQLAFRYKENSKVDDKWEKKCQKIFSFAHQTISALIKAELAELP 147
                     PL+     L F + +  +++DKW+  C  +  F     +ALI   ++   
Sbjct: 61  ASSASAFLTAPLLEFLLALYFLFADAMQLNDKWQGLCWPMMDFLRCVTAALIYFAISITA 120

Query: 148 LRLFLQGA-LAAGEIGF 163
           +  +  GA  AAG  GF
Sbjct: 121 IAKYSDGASKAAGVFGF 137


>gi|34419635 heat shock 70kDa protein 6 (HSP70B') [Homo sapiens]
          Length = 643

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 16/47 (34%), Positives = 26/47 (55%)

Query: 252 KNGEELHGGKRVMECLKKALKIANQCMDPSLQVQLFIEILNRYIYFY 298
           K+G++L G KR +  L+ A + A + +  S Q  L I+ L   + FY
Sbjct: 250 KHGKDLSGNKRALRRLRTACERAKRTLSSSTQATLEIDSLFEGVDFY 296


>gi|82880656 coiled-coil domain containing 46 isoform a [Homo
           sapiens]
          Length = 955

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 14/89 (15%)

Query: 261 KRVMECLKKALKIANQCMDPSLQVQLFIEILNRYIYFYEKENDAVTIQVLNQLIQKIRED 320
           +R +E L+K L+ AN  M+   Q+Q F            K+ DA  I  +   + K+RE+
Sbjct: 691 EREIENLEKQLRAAN--MEHENQIQEF------------KKRDAQVIADMEAQVHKLREE 736

Query: 321 LPNLESSEETEQINKHFHNTLEHLRLRRE 349
           L N+ S  + + +        E  R  RE
Sbjct: 737 LINVNSQRKQQLVELGLLREEEKQRATRE 765


>gi|4826954 parathyroid hormone 2 receptor precursor [Homo sapiens]
          Length = 550

 Score = 30.0 bits (66), Expect = 3.4
 Identities = 19/59 (32%), Positives = 25/59 (42%)

Query: 172 EFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASKLLKK 230
           EF  + + +Y    S S   LA   LIIG F R+ C     H  L     L A+ +  K
Sbjct: 139 EFFERLYVMYTVGYSISFGSLAVAILIIGYFRRLHCTRNYIHMHLFVSFMLRATSIFVK 197


>gi|115511012 coiled-coil domain containing 136 [Homo sapiens]
          Length = 1154

 Score = 30.0 bits (66), Expect = 3.4
 Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 3/95 (3%)

Query: 267 LKKALKIANQCMDPSLQVQLFIEILNRYIYFYEKENDAVTIQVLNQLIQKIREDLPNLES 326
           L++  ++A Q  D SL++Q  +E   R     + E     IQ L   ++ +RE++  LE 
Sbjct: 72  LEETRELAGQHEDDSLELQGLLED-ERLASAQQAEVFTKQIQQLQGELRSLREEISLLEH 130

Query: 327 SEETE--QINKHFHNTLEHLRLRRESPESEGPIYE 359
            +E+E  +I +  H     ++  R++ E     +E
Sbjct: 131 EKESELKEIEQELHLAQAEIQSLRQAAEDSATEHE 165


>gi|148727286 acyl-CoA thioesterase 2 [Homo sapiens]
          Length = 483

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 5/88 (5%)

Query: 5   HYAGHELLQNVEVIKCNCVKKNKKVDAAASIKDQPDQPVEDPDPEDFADEQSLVGRFIHL 64
           HY G E L  V V + N +K  K  D  A I D  + P+E PD + F   +     F+ L
Sbjct: 328 HYKG-ETLPPVGVNR-NRIKVTK--DGYADIVDVLNSPLEGPDQKSFIPVERAESTFLFL 383

Query: 65  LRSEDPD-QQYLILNTARKHFGAGGNQR 91
           +  +D + +     N A K   A G ++
Sbjct: 384 VGQDDHNWKSEFYANEACKRLQAHGRRK 411


>gi|119393899 GLI-Kruppel family member GLI3 [Homo sapiens]
          Length = 1580

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)

Query: 297 FYEKENDAVTIQVLN-QLIQKIREDLPNLESSEETEQINKHFHNTLEHL 344
           ++ +  +A+T+Q  N Q + K+ E+ P+  S E    I K  H +L H+
Sbjct: 50  YHRERRNAITMQPQNVQGLSKVSEE-PSTSSDERASLIKKEIHGSLPHV 97


>gi|39812492 TH1-like protein [Homo sapiens]
          Length = 590

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 15/59 (25%), Positives = 29/59 (49%)

Query: 31 AAASIKDQPDQPVEDPDPEDFADEQSLVGRFIHLLRSEDPDQQYLILNTARKHFGAGGN 89
          +AA   D+ D   ++ D  +  D+  +    +H   + D   +  I NT +++F AGG+
Sbjct: 17 SAAEWGDEADGGQQEDDSGEGEDDAEVQQECLHKFSTRDYIMEPSIFNTLKRYFQAGGS 75


>gi|53729325 nuclear receptor subfamily 6, group A, member 1 isoform
           1 [Homo sapiens]
          Length = 480

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 9/56 (16%)

Query: 288 IEILNRYIYFYEKENDAVTIQVLNQ------LIQKIREDLPNLESSEETEQINKHF 337
           +E++ R IY Y K +    ++V N+       I  + +D+  L S+ + EQ+NK +
Sbjct: 366 MEVIERLIYLYHKFHQ---LKVSNEEYACMKAINFLNQDIRGLTSASQLEQLNKRY 418


>gi|53729327 nuclear receptor subfamily 6, group A, member 1 isoform
           2 [Homo sapiens]
          Length = 475

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 9/56 (16%)

Query: 288 IEILNRYIYFYEKENDAVTIQVLNQ------LIQKIREDLPNLESSEETEQINKHF 337
           +E++ R IY Y K +    ++V N+       I  + +D+  L S+ + EQ+NK +
Sbjct: 361 MEVIERLIYLYHKFHQ---LKVSNEEYACMKAINFLNQDIRGLTSASQLEQLNKRY 413


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.135    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,855,241
Number of Sequences: 37866
Number of extensions: 587792
Number of successful extensions: 1708
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1699
Number of HSP's gapped (non-prelim): 15
length of query: 363
length of database: 18,247,518
effective HSP length: 104
effective length of query: 259
effective length of database: 14,309,454
effective search space: 3706148586
effective search space used: 3706148586
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.