BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|169168320 PREDICTED: similar to hCG39609 [Homo sapiens] (183 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|169168320 PREDICTED: similar to hCG39609 [Homo sapiens] 375 e-104 gi|239748615 PREDICTED: similar to hCG39609 [Homo sapiens] 375 e-104 gi|239742640 PREDICTED: similar to hCG39609 [Homo sapiens] 375 e-104 gi|10801345 eukaryotic translation initiation factor 3, subunit ... 268 2e-72 gi|56549645 nucleoporin 98kD isoform 4 [Homo sapiens] 28 4.4 gi|21264365 nucleoporin 98kD isoform 1 [Homo sapiens] 28 4.4 gi|157151767 FKSG83 [Homo sapiens] 28 4.4 gi|30387611 cell division cycle 2-like 6 (CDK8-like) [Homo sapiens] 28 5.7 gi|55743157 WD repeat domain 33 isoform 2 [Homo sapiens] 27 7.5 gi|222352168 hypothetical protein LOC389161 [Homo sapiens] 27 9.8 gi|222144244 fibroblast growth factor receptor 2 isoform 9 precu... 27 9.8 gi|222144231 fibroblast growth factor receptor 2 isoform 3 precu... 27 9.8 gi|222144237 fibroblast growth factor receptor 2 isoform 6 precu... 27 9.8 gi|222144235 fibroblast growth factor receptor 2 isoform 5 precu... 27 9.8 gi|222144233 fibroblast growth factor receptor 2 isoform 4 precu... 27 9.8 gi|221316639 fibroblast growth factor receptor 2 isoform 1 precu... 27 9.8 gi|221316638 fibroblast growth factor receptor 2 isoform 2 precu... 27 9.8 >gi|169168320 PREDICTED: similar to hCG39609 [Homo sapiens] Length = 183 Score = 375 bits (963), Expect = e-104 Identities = 183/183 (100%), Positives = 183/183 (100%) Query: 1 MVIFEQMRANVGMLLQGINRNNPEKLATLECYVEMQAKDTAYDLEANPVVLKLYQSNPVF 60 MVIFEQMRANVGMLLQGINRNNPEKLATLECYVEMQAKDTAYDLEANPVVLKLYQSNPVF Sbjct: 1 MVIFEQMRANVGMLLQGINRNNPEKLATLECYVEMQAKDTAYDLEANPVVLKLYQSNPVF 60 Query: 61 FQTTDTAQIQLKALTNLPHTNFTPSLDENVDLLEGITGFEDSVRMCICPVVGITYQHIDH 120 FQTTDTAQIQLKALTNLPHTNFTPSLDENVDLLEGITGFEDSVRMCICPVVGITYQHIDH Sbjct: 61 FQTTDTAQIQLKALTNLPHTNFTPSLDENVDLLEGITGFEDSVRMCICPVVGITYQHIDH 120 Query: 121 WLLAEMPGYLSDSQLKVWMRKYTWRADESQQIFICSQEENIKPKNPVEKIDFDSVSSIMA 180 WLLAEMPGYLSDSQLKVWMRKYTWRADESQQIFICSQEENIKPKNPVEKIDFDSVSSIMA Sbjct: 121 WLLAEMPGYLSDSQLKVWMRKYTWRADESQQIFICSQEENIKPKNPVEKIDFDSVSSIMA 180 Query: 181 FFQ 183 FFQ Sbjct: 181 FFQ 183 >gi|239748615 PREDICTED: similar to hCG39609 [Homo sapiens] Length = 183 Score = 375 bits (963), Expect = e-104 Identities = 183/183 (100%), Positives = 183/183 (100%) Query: 1 MVIFEQMRANVGMLLQGINRNNPEKLATLECYVEMQAKDTAYDLEANPVVLKLYQSNPVF 60 MVIFEQMRANVGMLLQGINRNNPEKLATLECYVEMQAKDTAYDLEANPVVLKLYQSNPVF Sbjct: 1 MVIFEQMRANVGMLLQGINRNNPEKLATLECYVEMQAKDTAYDLEANPVVLKLYQSNPVF 60 Query: 61 FQTTDTAQIQLKALTNLPHTNFTPSLDENVDLLEGITGFEDSVRMCICPVVGITYQHIDH 120 FQTTDTAQIQLKALTNLPHTNFTPSLDENVDLLEGITGFEDSVRMCICPVVGITYQHIDH Sbjct: 61 FQTTDTAQIQLKALTNLPHTNFTPSLDENVDLLEGITGFEDSVRMCICPVVGITYQHIDH 120 Query: 121 WLLAEMPGYLSDSQLKVWMRKYTWRADESQQIFICSQEENIKPKNPVEKIDFDSVSSIMA 180 WLLAEMPGYLSDSQLKVWMRKYTWRADESQQIFICSQEENIKPKNPVEKIDFDSVSSIMA Sbjct: 121 WLLAEMPGYLSDSQLKVWMRKYTWRADESQQIFICSQEENIKPKNPVEKIDFDSVSSIMA 180 Query: 181 FFQ 183 FFQ Sbjct: 181 FFQ 183 >gi|239742640 PREDICTED: similar to hCG39609 [Homo sapiens] Length = 183 Score = 375 bits (963), Expect = e-104 Identities = 183/183 (100%), Positives = 183/183 (100%) Query: 1 MVIFEQMRANVGMLLQGINRNNPEKLATLECYVEMQAKDTAYDLEANPVVLKLYQSNPVF 60 MVIFEQMRANVGMLLQGINRNNPEKLATLECYVEMQAKDTAYDLEANPVVLKLYQSNPVF Sbjct: 1 MVIFEQMRANVGMLLQGINRNNPEKLATLECYVEMQAKDTAYDLEANPVVLKLYQSNPVF 60 Query: 61 FQTTDTAQIQLKALTNLPHTNFTPSLDENVDLLEGITGFEDSVRMCICPVVGITYQHIDH 120 FQTTDTAQIQLKALTNLPHTNFTPSLDENVDLLEGITGFEDSVRMCICPVVGITYQHIDH Sbjct: 61 FQTTDTAQIQLKALTNLPHTNFTPSLDENVDLLEGITGFEDSVRMCICPVVGITYQHIDH 120 Query: 121 WLLAEMPGYLSDSQLKVWMRKYTWRADESQQIFICSQEENIKPKNPVEKIDFDSVSSIMA 180 WLLAEMPGYLSDSQLKVWMRKYTWRADESQQIFICSQEENIKPKNPVEKIDFDSVSSIMA Sbjct: 121 WLLAEMPGYLSDSQLKVWMRKYTWRADESQQIFICSQEENIKPKNPVEKIDFDSVSSIMA 180 Query: 181 FFQ 183 FFQ Sbjct: 181 FFQ 183 >gi|10801345 eukaryotic translation initiation factor 3, subunit 12 [Homo sapiens] Length = 218 Score = 268 bits (685), Expect = 2e-72 Identities = 148/218 (67%), Positives = 156/218 (71%), Gaps = 35/218 (16%) Query: 1 MVIFEQMRANVGMLLQGINRNNPEKLATLECYVEMQAKDTAYDLEANPVVLKLYQSNPVF 60 M +FEQMRANVG LL+GI+R NPE LATLE YVE QAK+ AYDLEAN VLKLYQ NP F Sbjct: 1 MAMFEQMRANVGKLLKGIDRYNPENLATLERYVETQAKENAYDLEANLAVLKLYQFNPAF 60 Query: 61 FQTTDTAQIQLKALTNLPHTNFT-----------------------------------PS 85 FQTT TAQI LKALTNLPHT+FT + Sbjct: 61 FQTTVTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQA 120 Query: 86 LDENVDLLEGITGFEDSVRMCICPVVGITYQHIDHWLLAEMPGYLSDSQLKVWMRKYTWR 145 LDEN+DLLEGITGFEDSVR IC VVGITYQHID WLLAEM G LSDSQLKVWM KY W Sbjct: 121 LDENMDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMSKYGWS 180 Query: 146 ADESQQIFICSQEENIKPKNPVEKIDFDSVSSIMAFFQ 183 ADES QIFICSQEE+IKPKN VEKIDFDSVSSIMA Q Sbjct: 181 ADESGQIFICSQEESIKPKNIVEKIDFDSVSSIMASSQ 218 >gi|56549645 nucleoporin 98kD isoform 4 [Homo sapiens] Length = 1726 Score = 28.1 bits (61), Expect = 4.4 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 4/48 (8%) Query: 113 ITYQHIDHWLLAEMPGYLSDSQLKVWMR---KYTWRADESQQIFICSQ 157 +T Q +D W + ++ D +L+++ K W+ E +QI +CSQ Sbjct: 1358 LTMQLVD-WHQLQADSFIQDERLRIFALLAGKPVWQLSEKKQINVCSQ 1404 >gi|21264365 nucleoporin 98kD isoform 1 [Homo sapiens] Length = 1800 Score = 28.1 bits (61), Expect = 4.4 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 4/48 (8%) Query: 113 ITYQHIDHWLLAEMPGYLSDSQLKVWMR---KYTWRADESQQIFICSQ 157 +T Q +D W + ++ D +L+++ K W+ E +QI +CSQ Sbjct: 1358 LTMQLVD-WHQLQADSFIQDERLRIFALLAGKPVWQLSEKKQINVCSQ 1404 >gi|157151767 FKSG83 [Homo sapiens] Length = 189 Score = 28.1 bits (61), Expect = 4.4 Identities = 15/43 (34%), Positives = 23/43 (53%) Query: 75 TNLPHTNFTPSLDENVDLLEGITGFEDSVRMCICPVVGITYQH 117 TN+ + + S+ EN +LE IT F S IC ++ I Y + Sbjct: 106 TNVCLSTYISSMYENSLILENITSFVSSSYPIICTLILINYDN 148 >gi|30387611 cell division cycle 2-like 6 (CDK8-like) [Homo sapiens] Length = 502 Score = 27.7 bits (60), Expect = 5.7 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%) Query: 149 SQQIFICSQEENIKPKNPVEKIDFDSVSSIMAF 181 S+ IF C QE+ IK NP D + S+M F Sbjct: 230 SEPIFHCRQED-IKTSNPFHHDQLDRIFSVMGF 261 >gi|55743157 WD repeat domain 33 isoform 2 [Homo sapiens] Length = 326 Score = 27.3 bits (59), Expect = 7.5 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 13/90 (14%) Query: 92 LLEGIT-GFEDSVRMCICPVVGITYQHIDHWLL-AEMPGYLSDSQLKVWMRKYTWRADES 149 L G+T FE ++ PV +T+ H D W+L A+ GY+ KY W+++ + Sbjct: 145 LWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTADHGGYV----------KY-WQSNMN 193 Query: 150 QQIFICSQEENIKPKNPVEKIDFDSVSSIM 179 + +E I+ + I F V +M Sbjct: 194 NVKMFQAHKEAIREARFIHNIPFSVVPIVM 223 >gi|222352168 hypothetical protein LOC389161 [Homo sapiens] Length = 544 Score = 26.9 bits (58), Expect = 9.8 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%) Query: 15 LQGINRNNPEKLATLECYVEMQAKDTAYDLEANPVVLKLYQSNPVFFQTTDTAQIQLKAL 74 LQ + N +K+ E K+T P V ++ S+P FF T +A LK+ Sbjct: 419 LQKHQQQNQKKITATARKKEKLIKNTYLPQVPLPPVSRVGYSHPSFFYATPSADFLLKSS 478 Query: 75 TN--LPHTNFTP 84 + L H+ TP Sbjct: 479 FSSFLEHSGKTP 490 >gi|222144244 fibroblast growth factor receptor 2 isoform 9 precursor [Homo sapiens] Length = 680 Score = 26.9 bits (58), Expect = 9.8 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%) Query: 43 DLEANPVVLKLYQSNPVFFQTTDTAQIQLKALTNLPHTNFTPSLDENVD--LLEGITGFE 100 D + P V KL + P+ Q T +A+ +N P T L D +L G++ +E Sbjct: 320 DFSSQPAVHKLTKRIPLRRQVTVSAESSSSMNSNTPLVRITTRLSSTADTPMLAGVSEYE 379 >gi|222144231 fibroblast growth factor receptor 2 isoform 3 precursor [Homo sapiens] Length = 769 Score = 26.9 bits (58), Expect = 9.8 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%) Query: 43 DLEANPVVLKLYQSNPVFFQTTDTAQIQLKALTNLPHTNFTPSLDENVD--LLEGITGFE 100 D + P V KL + P+ Q T +A+ +N P T L D +L G++ +E Sbjct: 409 DFSSQPAVHKLTKRIPLRRQVTVSAESSSSMNSNTPLVRITTRLSSTADTPMLAGVSEYE 468 >gi|222144237 fibroblast growth factor receptor 2 isoform 6 precursor [Homo sapiens] Length = 706 Score = 26.9 bits (58), Expect = 9.8 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%) Query: 43 DLEANPVVLKLYQSNPVFFQTTDTAQIQLKALTNLPHTNFTPSLDENVD--LLEGITGFE 100 D + P V KL + P+ Q T +A+ +N P T L D +L G++ +E Sbjct: 293 DFSSQPAVHKLTKRIPLRRQVTVSAESSSSMNSNTPLVRITTRLSSTADTPMLAGVSEYE 352 >gi|222144235 fibroblast growth factor receptor 2 isoform 5 precursor [Homo sapiens] Length = 707 Score = 26.9 bits (58), Expect = 9.8 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%) Query: 43 DLEANPVVLKLYQSNPVFFQTTDTAQIQLKALTNLPHTNFTPSLDENVD--LLEGITGFE 100 D + P V KL + P+ Q T +A+ +N P T L D +L G++ +E Sbjct: 319 DFSSQPAVHKLTKRIPLRRQVTVSAESSSSMNSNTPLVRITTRLSSTADTPMLAGVSEYE 378 >gi|222144233 fibroblast growth factor receptor 2 isoform 4 precursor [Homo sapiens] Length = 709 Score = 26.9 bits (58), Expect = 9.8 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%) Query: 43 DLEANPVVLKLYQSNPVFFQTTDTAQIQLKALTNLPHTNFTPSLDENVD--LLEGITGFE 100 D + P V KL + P+ Q T +A+ +N P T L D +L G++ +E Sbjct: 296 DFSSQPAVHKLTKRIPLRRQVTVSAESSSSMNSNTPLVRITTRLSSTADTPMLAGVSEYE 355 >gi|221316639 fibroblast growth factor receptor 2 isoform 1 precursor [Homo sapiens] Length = 821 Score = 26.9 bits (58), Expect = 9.8 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%) Query: 43 DLEANPVVLKLYQSNPVFFQTTDTAQIQLKALTNLPHTNFTPSLDENVD--LLEGITGFE 100 D + P V KL + P+ Q T +A+ +N P T L D +L G++ +E Sbjct: 408 DFSSQPAVHKLTKRIPLRRQVTVSAESSSSMNSNTPLVRITTRLSSTADTPMLAGVSEYE 467 >gi|221316638 fibroblast growth factor receptor 2 isoform 2 precursor [Homo sapiens] Length = 822 Score = 26.9 bits (58), Expect = 9.8 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%) Query: 43 DLEANPVVLKLYQSNPVFFQTTDTAQIQLKALTNLPHTNFTPSLDENVD--LLEGITGFE 100 D + P V KL + P+ Q T +A+ +N P T L D +L G++ +E Sbjct: 409 DFSSQPAVHKLTKRIPLRRQVTVSAESSSSMNSNTPLVRITTRLSSTADTPMLAGVSEYE 468 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.320 0.134 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 6,647,525 Number of Sequences: 37866 Number of extensions: 272069 Number of successful extensions: 615 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 12 Number of HSP's that attempted gapping in prelim test: 608 Number of HSP's gapped (non-prelim): 19 length of query: 183 length of database: 18,247,518 effective HSP length: 96 effective length of query: 87 effective length of database: 14,612,382 effective search space: 1271277234 effective search space used: 1271277234 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.