Search of human proteins with 169168219

Search of human proteins with 169168219

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169168219 PREDICTED: hypothetical protein [Homo sapiens]
         (349 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169168219 PREDICTED: hypothetical protein [Homo sapiens]           722   0.0  
gi|169167696 PREDICTED: hypothetical protein [Homo sapiens]           629   e-180
gi|169167981 PREDICTED: hypothetical protein [Homo sapiens]           264   8e-71
gi|187937179 apoptosis-associated tyrosine kinase [Homo sapiens]       35   0.100
gi|86990448 chromosome 1 open reading frame 187 [Homo sapiens]         33   0.38 
gi|5174547 mitogen-activated protein kinase kinase kinase 5 [Hom...    32   1.1  
gi|239750815 PREDICTED: StAR-related lipid transfer (START) doma...    30   2.5  
gi|239745175 PREDICTED: StAR-related lipid transfer (START) doma...    30   2.5  
gi|55743098 alpha 3 type VI collagen isoform 1 precursor [Homo s...    30   3.2  
gi|21955174 kinesin family member C2 [Homo sapiens]                    29   5.5  
gi|126032338 ryanodine receptor 3 [Homo sapiens]                       29   7.2  
gi|4507577 tumor necrosis factor receptor 2 precursor [Homo sapi...    28   9.4  
gi|118918407 spectrin repeat containing, nuclear envelope 2 isof...    28   9.4  
gi|118918403 spectrin repeat containing, nuclear envelope 2 isof...    28   9.4  

>gi|169168219 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 349

 Score =  722 bits (1863), Expect = 0.0
 Identities = 349/349 (100%), Positives = 349/349 (100%)

Query: 1   MSQELLERQGSSAGQKLHLVRWAVFRAASLIIHFIPEQVTRHSKKQGTILKRWNKTYPSA 60
           MSQELLERQGSSAGQKLHLVRWAVFRAASLIIHFIPEQVTRHSKKQGTILKRWNKTYPSA
Sbjct: 1   MSQELLERQGSSAGQKLHLVRWAVFRAASLIIHFIPEQVTRHSKKQGTILKRWNKTYPSA 60

Query: 61  FSEAAIEAPTRWRSRVSIGSGAGPWVEPAGLEEGCRLPMFMTRSRTKPHAPGERIHGTQE 120
           FSEAAIEAPTRWRSRVSIGSGAGPWVEPAGLEEGCRLPMFMTRSRTKPHAPGERIHGTQE
Sbjct: 61  FSEAAIEAPTRWRSRVSIGSGAGPWVEPAGLEEGCRLPMFMTRSRTKPHAPGERIHGTQE 120

Query: 121 TPSCSPTHLVDSHVLLQLWLLQKQKPAVDSGGAEELRGICKVKVLWCPLQGSFPLLLGPL 180
           TPSCSPTHLVDSHVLLQLWLLQKQKPAVDSGGAEELRGICKVKVLWCPLQGSFPLLLGPL
Sbjct: 121 TPSCSPTHLVDSHVLLQLWLLQKQKPAVDSGGAEELRGICKVKVLWCPLQGSFPLLLGPL 180

Query: 181 VQTLGLLLENIMNFNNQAMNSRASWKKTIDFYFVLDSSSSSFHDKKHWTLKATRITSSNP 240
           VQTLGLLLENIMNFNNQAMNSRASWKKTIDFYFVLDSSSSSFHDKKHWTLKATRITSSNP
Sbjct: 181 VQTLGLLLENIMNFNNQAMNSRASWKKTIDFYFVLDSSSSSFHDKKHWTLKATRITSSNP 240

Query: 241 TPYQAEKAKMMGERTLDQFTVYFISFIHLTKIYYLSGTGQDTEGMELVTQIHAWVIDILF 300
           TPYQAEKAKMMGERTLDQFTVYFISFIHLTKIYYLSGTGQDTEGMELVTQIHAWVIDILF
Sbjct: 241 TPYQAEKAKMMGERTLDQFTVYFISFIHLTKIYYLSGTGQDTEGMELVTQIHAWVIDILF 300

Query: 301 YRSRALLWRREASAEIQWYLTSVWWWRRSGTLGGGGGTAGSCQVQCSYL 349
           YRSRALLWRREASAEIQWYLTSVWWWRRSGTLGGGGGTAGSCQVQCSYL
Sbjct: 301 YRSRALLWRREASAEIQWYLTSVWWWRRSGTLGGGGGTAGSCQVQCSYL 349


>gi|169167696 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 313

 Score =  629 bits (1621), Expect = e-180
 Identities = 300/302 (99%), Positives = 302/302 (100%)

Query: 48  TILKRWNKTYPSAFSEAAIEAPTRWRSRVSIGSGAGPWVEPAGLEEGCRLPMFMTRSRTK 107
           ++LKRWNKTYPSAFSEAAIEAPTRWRSRVSIGSGAGPWVEPAGLEEGCRLPMFMTRSRTK
Sbjct: 12  SVLKRWNKTYPSAFSEAAIEAPTRWRSRVSIGSGAGPWVEPAGLEEGCRLPMFMTRSRTK 71

Query: 108 PHAPGERIHGTQETPSCSPTHLVDSHVLLQLWLLQKQKPAVDSGGAEELRGICKVKVLWC 167
           PHAPGERIHGTQETPSCSPTHLVDSHVLLQLWLLQKQKPAVDSGGAEELRGICKVKVLWC
Sbjct: 72  PHAPGERIHGTQETPSCSPTHLVDSHVLLQLWLLQKQKPAVDSGGAEELRGICKVKVLWC 131

Query: 168 PLQGSFPLLLGPLVQTLGLLLENIMNFNNQAMNSRASWKKTIDFYFVLDSSSSSFHDKKH 227
           PLQGSFPLLLGPLVQTLGLLLENIMNFNNQAMNSRASWKKTIDFYFVLDSSSSSFHDKKH
Sbjct: 132 PLQGSFPLLLGPLVQTLGLLLENIMNFNNQAMNSRASWKKTIDFYFVLDSSSSSFHDKKH 191

Query: 228 WTLKATRITSSNPTPYQAEKAKMMGERTLDQFTVYFISFIHLTKIYYLSGTGQDTEGMEL 287
           WTLKATRITSSNPTPYQAEKAKMMGERTLDQFTVYFISFIHLTKIYYLSGTGQDTEGMEL
Sbjct: 192 WTLKATRITSSNPTPYQAEKAKMMGERTLDQFTVYFISFIHLTKIYYLSGTGQDTEGMEL 251

Query: 288 VTQIHAWVIDILFYRSRALLWRREASAEIQWYLTSVWWWRRSGTLGGGGGTAGSCQVQCS 347
           VTQIHAWVIDILFYRSRALLWRREASAEIQWYLTSVWWWRRSGTLGGGGGTAGSCQVQCS
Sbjct: 252 VTQIHAWVIDILFYRSRALLWRREASAEIQWYLTSVWWWRRSGTLGGGGGTAGSCQVQCS 311

Query: 348 YL 349
           YL
Sbjct: 312 YL 313


>gi|169167981 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 263

 Score =  264 bits (675), Expect = 8e-71
 Identities = 125/129 (96%), Positives = 126/129 (97%)

Query: 221 SFHDKKHWTLKATRITSSNPTPYQAEKAKMMGERTLDQFTVYFISFIHLTKIYYLSGTGQ 280
           +F   KHWTLKATRITSSNPTPYQAEKAKMMGERTLDQFTVYFISFIHLTKIYYLSGTGQ
Sbjct: 135 AFTGWKHWTLKATRITSSNPTPYQAEKAKMMGERTLDQFTVYFISFIHLTKIYYLSGTGQ 194

Query: 281 DTEGMELVTQIHAWVIDILFYRSRALLWRREASAEIQWYLTSVWWWRRSGTLGGGGGTAG 340
           DTEGMELVTQIHAWVIDILFYRSRALLWRREASAEIQWYLTSVWWWRRSGTLGGGGGTAG
Sbjct: 195 DTEGMELVTQIHAWVIDILFYRSRALLWRREASAEIQWYLTSVWWWRRSGTLGGGGGTAG 254

Query: 341 SCQVQCSYL 349
           SCQVQCSYL
Sbjct: 255 SCQVQCSYL 263


>gi|187937179 apoptosis-associated tyrosine kinase [Homo sapiens]
          Length = 1374

 Score = 35.0 bits (79), Expect = 0.100
 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 11/66 (16%)

Query: 72  WRSRVSIGSGAGP-----W--VEPAGLEEGCRLPMFMTRSRTKPHAPGERIHGTQ----E 120
           WRS VS  + +G      W  V   G  EGC  P    R+  +P  PGE + G Q    +
Sbjct: 678 WRSNVSANNNSGSRCPESWDPVSAGGHAEGCPSPKQTPRASPEPGYPGEPLLGLQAASAQ 737

Query: 121 TPSCSP 126
            P C P
Sbjct: 738 EPGCCP 743


>gi|86990448 chromosome 1 open reading frame 187 [Homo sapiens]
          Length = 349

 Score = 33.1 bits (74), Expect = 0.38
 Identities = 17/50 (34%), Positives = 23/50 (46%)

Query: 42  HSKKQGTILKRWNKTYPSAFSEAAIEAPTRWRSRVSIGSGAGPWVEPAGL 91
           H +++G   K W    PS   + A+   TR  SR+    G  P   PAGL
Sbjct: 56  HHRRRGPGKKEWGPGLPSQAQDGAVVTATRQASRLPEAEGLLPEQSPAGL 105


>gi|5174547 mitogen-activated protein kinase kinase kinase 5 [Homo
           sapiens]
          Length = 1374

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 21/112 (18%), Positives = 47/112 (41%), Gaps = 12/112 (10%)

Query: 173 FPLLLGPLVQTLGLLLENIMNFNNQAMNSRASWKKTIDFYFVLDSSSSSFHDKKHWTLKA 232
           FP+L+   ++   +   + ++ NN+        +KTI  + VL       H+   W   A
Sbjct: 559 FPVLI---LEPTKIYQPSYLSINNEVE------EKTISIWHVLPDDKKGIHE---WNFSA 606

Query: 233 TRITSSNPTPYQAEKAKMMGERTLDQFTVYFISFIHLTKIYYLSGTGQDTEG 284
           + +   + + ++     +      D F +YF + +H  K + +  T  + +G
Sbjct: 607 SSVRGVSISKFEERCCFLYVLHNSDDFQIYFCTELHCKKFFEMVNTITEEKG 658


>gi|239750815 PREDICTED: StAR-related lipid transfer (START) domain
            containing 9 [Homo sapiens]
          Length = 4614

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 31/96 (32%), Positives = 41/96 (42%), Gaps = 16/96 (16%)

Query: 41   RHSKKQGTILKRWNKTYPSAFSEAAIEAPTRW--RSRVSIGSGAGPWVEPAGLEEGCRLP 98
            R S KQ TIL       P A +  A+EAPT+   + + S+GSG    V  AG +    +P
Sbjct: 2762 RASPKQDTIL-------PGALTRVALEAPTQQCVQCKESVGSGLTE-VCRAGSKHSRPIP 2813

Query: 99   MFMTRSRTKPHAPGERIHGTQETPSCSPTHLVDSHV 134
            +   R    P   GE      E P   P   +D  V
Sbjct: 2814 LPDQRPSANPGGIGE------EAPCRHPREALDGPV 2843


>gi|239745175 PREDICTED: StAR-related lipid transfer (START) domain
            containing 9 [Homo sapiens]
          Length = 4614

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 31/96 (32%), Positives = 41/96 (42%), Gaps = 16/96 (16%)

Query: 41   RHSKKQGTILKRWNKTYPSAFSEAAIEAPTRW--RSRVSIGSGAGPWVEPAGLEEGCRLP 98
            R S KQ TIL       P A +  A+EAPT+   + + S+GSG    V  AG +    +P
Sbjct: 2762 RASPKQDTIL-------PGALTRVALEAPTQQCVQCKESVGSGLTE-VCRAGSKHSRPIP 2813

Query: 99   MFMTRSRTKPHAPGERIHGTQETPSCSPTHLVDSHV 134
            +   R    P   GE      E P   P   +D  V
Sbjct: 2814 LPDQRPSANPGGIGE------EAPCRHPREALDGPV 2843


>gi|55743098 alpha 3 type VI collagen isoform 1 precursor [Homo
           sapiens]
          Length = 3177

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 29/131 (22%), Positives = 44/131 (33%), Gaps = 26/131 (19%)

Query: 179 PLVQTLGLLLENIMNFNNQAMNSRASWKKTIDFYFVLDSSSSSFHDKKHWTLKATRITSS 238
           PLV    L L      + Q   +        D  F++DSS         WT+        
Sbjct: 8   PLVAVFCLFLSGFPTTHAQQQQADVKNGAAADIIFLVDSS---------WTIGEEHFQLV 58

Query: 239 NPTPYQAEKAKMMGERTLDQFTVYF-----ISFI------------HLTKIYYLSGTGQD 281
               Y   K+  +GE       V F       F+            H++ + Y+ GT Q 
Sbjct: 59  REFLYDVVKSLAVGENDFHFALVQFNGNPHTEFLLNTYRTKQEVLSHISNMSYIGGTNQT 118

Query: 282 TEGMELVTQIH 292
            +G+E + Q H
Sbjct: 119 GKGLEYIMQSH 129


>gi|21955174 kinesin family member C2 [Homo sapiens]
          Length = 838

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 18/62 (29%)

Query: 76  VSIGSGAGPWVEPAGLEEGCRLPMFMTRSRTKPHAP-------GERIHGTQETPSCSPTH 128
           + +G+GAG           CR P     +R +P AP       G RI G Q  PS SPT 
Sbjct: 705 LQVGAGAGQVC-------ACRSPP----TRARPPAPLARRSPRGRRISGRQSAPSSSPTE 753

Query: 129 LV 130
            V
Sbjct: 754 WV 755


>gi|126032338 ryanodine receptor 3 [Homo sapiens]
          Length = 4870

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 96   RLPMFMTRSRTKPHAPGERIHGTQETPSC 124
            RLP F+   +  PH    RI GT ++P C
Sbjct: 1240 RLPTFVNVPKDHPHIEVMRIDGTMDSPPC 1268


>gi|4507577 tumor necrosis factor receptor 2 precursor [Homo
           sapiens]
          Length = 461

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 22/72 (30%), Positives = 29/72 (40%), Gaps = 12/72 (16%)

Query: 98  PMFMTRSRTKPHAPGERIHGTQ---------ETPSCSPTHLVDSHVLLQL---WLLQKQK 145
           P+ + R    PH P ++  GTQ           PS S + L  S   L        Q Q 
Sbjct: 291 PLCLQREAKVPHLPADKARGTQGPEQQHLLITAPSSSSSSLESSASALDRRAPTRNQPQA 350

Query: 146 PAVDSGGAEELR 157
           P V++ GA E R
Sbjct: 351 PGVEASGAGEAR 362


>gi|118918407 spectrin repeat containing, nuclear envelope 2 isoform 5
            [Homo sapiens]
          Length = 6907

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 2/42 (4%)

Query: 166  WCPLQGSFPLLLGPLVQTLGLLLENIMNFNNQAMNSRASWKK 207
            W  ++ S P++L   ++TL   +EN+ +  ++A +S  SW+K
Sbjct: 5297 WYCMEHSKPVVLS--LETLRCQVENLQSLQDEAESSEGSWEK 5336


>gi|118918403 spectrin repeat containing, nuclear envelope 2 isoform 1
            [Homo sapiens]
          Length = 6885

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 2/42 (4%)

Query: 166  WCPLQGSFPLLLGPLVQTLGLLLENIMNFNNQAMNSRASWKK 207
            W  ++ S P++L   ++TL   +EN+ +  ++A +S  SW+K
Sbjct: 5297 WYCMEHSKPVVLS--LETLRCQVENLQSLQDEAESSEGSWEK 5336


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.133    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,220,474
Number of Sequences: 37866
Number of extensions: 653528
Number of successful extensions: 1574
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1564
Number of HSP's gapped (non-prelim): 21
length of query: 349
length of database: 18,247,518
effective HSP length: 103
effective length of query: 246
effective length of database: 14,347,320
effective search space: 3529440720
effective search space used: 3529440720
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.