Guide to the Human Genome
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Name: LOC100129411 Sequence: fasta or formatted (313aa) NCBI GI: 169167696
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {263aa} PREDICTED: hypothetical protein
alt prot {349aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         19           2
 C cysteine            2.2          7           1
 D aspartate           2.6          8           1
 E glutamate           5.8         18           2
 F phenylalanine       3.5         11           1
 G glycine             8.0         25           5
 H histidine           2.6          8           1
 I isoleucine          5.1         16           1
 K lysine              4.8         15           2
 L leucine            10.2         32           3
 M methionine          2.6          8           2
 N asparagine          3.2         10           2
 P proline             4.8         15           1
 Q glutamine           4.5         14           1
 R arginine            5.8         18           2
 S serine              9.3         29           5
 T threonine           7.0         22           1
 V valine              5.1         16           1
 W tryptophan          4.2         13           3
 Y tyrosine            2.9          9           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100129411          0.962   PREDICTED: hypothetical protein 
LOC100129411          0.381   PREDICTED: hypothetical protein 
AATK                  0.016   apoptosis-associated tyrosine kinase 
MAP3K5                0.011   mitogen-activated protein kinase kinase kinase 5 [Hom...
IRF2BP2               0.011   interferon regulatory factor 2 binding protein 2 is...
COL6A3                0.008   alpha 3 type VI collagen isoform 1 precursor 
KIFC2                 0.006   kinesin family member C2 
RYR3                  0.006   ryanodine receptor 3 
C1orf187              0.006   chromosome 1 open reading frame 187 
IRF2BP2               0.006   interferon regulatory factor 2 binding protein 2 is...
TNFRSF1B              0.005   tumor necrosis factor receptor 2 precursor 
SYNE2                 0.005   spectrin repeat containing, nuclear envelope 2 isof...
SYNE2                 0.005   spectrin repeat containing, nuclear envelope 2 isof...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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