Search of human proteins with 169163665

Search of human proteins with 169163665

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169163665 PREDICTED: similar to hCG1784039 [Homo sapiens]
         (93 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169163665 PREDICTED: similar to hCG1784039 [Homo sapiens]          194   1e-50
gi|169163222 PREDICTED: hypothetical protein LOC391359 [Homo sap...   194   1e-50
gi|239747698 PREDICTED: similar to hCG1784039 [Homo sapiens]          101   1e-22
gi|4503561 epithelial membrane protein 2 [Homo sapiens]                91   3e-19
gi|4505907 peripheral myelin protein 22 [Homo sapiens]                 41   2e-04
gi|24430165 peripheral myelin protein 22 [Homo sapiens]                41   2e-04
gi|24430163 peripheral myelin protein 22 [Homo sapiens]                41   2e-04
gi|4503559 epithelial membrane protein 1 [Homo sapiens]                40   5e-04
gi|4503563 epithelial membrane protein 3 [Homo sapiens]                37   0.003
gi|239916002 lens intrinsic membrane protein 2, 19kDa isoform 2 ...    29   0.93 
gi|21361300 lens intrinsic membrane protein 2, 19kDa isoform 1 [...    29   0.93 
gi|153945846 inositol 1,4,5-triphosphate receptor, type 3 [Homo ...    28   1.6  
gi|145699123 dedicator of cytokinesis 11 [Homo sapiens]                27   3.5  
gi|110349767 calcium channel, voltage-dependent, L type, alpha 1...    27   4.6  
gi|188528658 transmembrane protein 182 [Homo sapiens]                  26   7.9  

>gi|169163665 PREDICTED: similar to hCG1784039 [Homo sapiens]
          Length = 93

 Score =  194 bits (494), Expect = 1e-50
 Identities = 93/93 (100%), Positives = 93/93 (100%)

Query: 1  MLVLLTFTVAFHITSAALLFIATIDNAWWVGNEFFADVWRICTKNTKYRRDETTDFYYLT 60
          MLVLLTFTVAFHITSAALLFIATIDNAWWVGNEFFADVWRICTKNTKYRRDETTDFYYLT
Sbjct: 1  MLVLLTFTVAFHITSAALLFIATIDNAWWVGNEFFADVWRICTKNTKYRRDETTDFYYLT 60

Query: 61 KEGSYGYSYILAWVAFAFTFISSMMYLITEEAE 93
          KEGSYGYSYILAWVAFAFTFISSMMYLITEEAE
Sbjct: 61 KEGSYGYSYILAWVAFAFTFISSMMYLITEEAE 93


>gi|169163222 PREDICTED: hypothetical protein LOC391359 [Homo
          sapiens]
          Length = 93

 Score =  194 bits (494), Expect = 1e-50
 Identities = 93/93 (100%), Positives = 93/93 (100%)

Query: 1  MLVLLTFTVAFHITSAALLFIATIDNAWWVGNEFFADVWRICTKNTKYRRDETTDFYYLT 60
          MLVLLTFTVAFHITSAALLFIATIDNAWWVGNEFFADVWRICTKNTKYRRDETTDFYYLT
Sbjct: 1  MLVLLTFTVAFHITSAALLFIATIDNAWWVGNEFFADVWRICTKNTKYRRDETTDFYYLT 60

Query: 61 KEGSYGYSYILAWVAFAFTFISSMMYLITEEAE 93
          KEGSYGYSYILAWVAFAFTFISSMMYLITEEAE
Sbjct: 61 KEGSYGYSYILAWVAFAFTFISSMMYLITEEAE 93


>gi|239747698 PREDICTED: similar to hCG1784039 [Homo sapiens]
          Length = 161

 Score =  101 bits (251), Expect = 1e-22
 Identities = 47/47 (100%), Positives = 47/47 (100%)

Query: 1  MLVLLTFTVAFHITSAALLFIATIDNAWWVGNEFFADVWRICTKNTK 47
          MLVLLTFTVAFHITSAALLFIATIDNAWWVGNEFFADVWRICTKNTK
Sbjct: 1  MLVLLTFTVAFHITSAALLFIATIDNAWWVGNEFFADVWRICTKNTK 47



 Score = 95.5 bits (236), Expect = 8e-21
 Identities = 45/45 (100%), Positives = 45/45 (100%)

Query: 49  RRDETTDFYYLTKEGSYGYSYILAWVAFAFTFISSMMYLITEEAE 93
           RRDETTDFYYLTKEGSYGYSYILAWVAFAFTFISSMMYLITEEAE
Sbjct: 117 RRDETTDFYYLTKEGSYGYSYILAWVAFAFTFISSMMYLITEEAE 161


>gi|4503561 epithelial membrane protein 2 [Homo sapiens]
          Length = 167

 Score = 90.5 bits (223), Expect = 3e-19
 Identities = 40/46 (86%), Positives = 43/46 (93%)

Query: 1  MLVLLTFTVAFHITSAALLFIATIDNAWWVGNEFFADVWRICTKNT 46
          MLVLL F +AFHITSAALLFIAT+DNAWWVG+EFFADVWRICT NT
Sbjct: 1  MLVLLAFIIAFHITSAALLFIATVDNAWWVGDEFFADVWRICTNNT 46



 Score = 63.5 bits (153), Expect = 3e-11
 Identities = 29/38 (76%), Positives = 32/38 (84%)

Query: 51  DETTDFYYLTKEGSYGYSYILAWVAFAFTFISSMMYLI 88
           D+   FY +T+EGSYGYSYILAWVAFA TFIS MMYLI
Sbjct: 125 DKNAKFYPVTREGSYGYSYILAWVAFACTFISGMMYLI 162


>gi|4505907 peripheral myelin protein 22 [Homo sapiens]
          Length = 160

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 17/46 (36%), Positives = 28/46 (60%)

Query: 1  MLVLLTFTVAFHITSAALLFIATIDNAWWVGNEFFADVWRICTKNT 46
          ML+LL   +  H+    LLF++TI + W VGN    D+W+ C+ ++
Sbjct: 1  MLLLLLSIIVLHVAVLVLLFVSTIVSQWIVGNGHATDLWQNCSTSS 46



 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 16/37 (43%), Positives = 26/37 (70%)

Query: 57  YYLTKEGSYGYSYILAWVAFAFTFISSMMYLITEEAE 93
           ++L  + SYG++YILAWVAF    +S ++Y+I  + E
Sbjct: 124 WHLNSDYSYGFAYILAWVAFPLALLSGVIYVILRKRE 160


>gi|24430165 peripheral myelin protein 22 [Homo sapiens]
          Length = 160

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 17/46 (36%), Positives = 28/46 (60%)

Query: 1  MLVLLTFTVAFHITSAALLFIATIDNAWWVGNEFFADVWRICTKNT 46
          ML+LL   +  H+    LLF++TI + W VGN    D+W+ C+ ++
Sbjct: 1  MLLLLLSIIVLHVAVLVLLFVSTIVSQWIVGNGHATDLWQNCSTSS 46



 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 16/37 (43%), Positives = 26/37 (70%)

Query: 57  YYLTKEGSYGYSYILAWVAFAFTFISSMMYLITEEAE 93
           ++L  + SYG++YILAWVAF    +S ++Y+I  + E
Sbjct: 124 WHLNSDYSYGFAYILAWVAFPLALLSGVIYVILRKRE 160


>gi|24430163 peripheral myelin protein 22 [Homo sapiens]
          Length = 160

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 17/46 (36%), Positives = 28/46 (60%)

Query: 1  MLVLLTFTVAFHITSAALLFIATIDNAWWVGNEFFADVWRICTKNT 46
          ML+LL   +  H+    LLF++TI + W VGN    D+W+ C+ ++
Sbjct: 1  MLLLLLSIIVLHVAVLVLLFVSTIVSQWIVGNGHATDLWQNCSTSS 46



 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 16/37 (43%), Positives = 26/37 (70%)

Query: 57  YYLTKEGSYGYSYILAWVAFAFTFISSMMYLITEEAE 93
           ++L  + SYG++YILAWVAF    +S ++Y+I  + E
Sbjct: 124 WHLNSDYSYGFAYILAWVAFPLALLSGVIYVILRKRE 160


>gi|4503559 epithelial membrane protein 1 [Homo sapiens]
          Length = 157

 Score = 39.7 bits (91), Expect = 5e-04
 Identities = 15/35 (42%), Positives = 25/35 (71%), Gaps = 3/35 (8%)

Query: 57  YYLTKEGS---YGYSYILAWVAFAFTFISSMMYLI 88
           +Y  ++G+   +GYSYIL W+ F F+FI  ++YL+
Sbjct: 119 HYANRDGTQYHHGYSYILGWICFCFSFIIGVLYLV 153



 Score = 38.9 bits (89), Expect = 0.001
 Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 2/45 (4%)

Query: 1  MLVLLTFTVAFHITSAALLFIATIDNAWWVGNEFFADV--WRICT 43
          MLVLL      HI +  +LF++TI N W V N   A V  W+ CT
Sbjct: 1  MLVLLAGIFVVHIATVIMLFVSTIANVWLVSNTVDASVGLWKNCT 45


>gi|4503563 epithelial membrane protein 3 [Homo sapiens]
          Length = 163

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 3/47 (6%)

Query: 1  MLVLLTFTVAFHITSAALLFIATIDNAWWV--GNEFFADVWRICTKN 45
          M +LL    A HI    LLF+AT+D +WW   G E   ++W  CT N
Sbjct: 1  MSLLLLVVSALHILILILLFVATLDKSWWTLPGKESL-NLWYDCTWN 46



 Score = 34.7 bits (78), Expect = 0.017
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 63  GSYGYSYILAWVAFAFTFISSMMYLITEEAE 93
           GS+GY + LAWVAF    +S ++Y+   + E
Sbjct: 133 GSFGYCFALAWVAFPLALVSGIIYIHLRKRE 163


>gi|239916002 lens intrinsic membrane protein 2, 19kDa isoform 2
           [Homo sapiens]
          Length = 173

 Score = 28.9 bits (63), Expect = 0.93
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 65  YGYSYILAWVAFAFTFISSMMYL 87
           + +SYIL WVA   TF + + Y+
Sbjct: 136 FSWSYILGWVAVLMTFFAGIFYM 158


>gi|21361300 lens intrinsic membrane protein 2, 19kDa isoform 1
           [Homo sapiens]
          Length = 215

 Score = 28.9 bits (63), Expect = 0.93
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 65  YGYSYILAWVAFAFTFISSMMYL 87
           + +SYIL WVA   TF + + Y+
Sbjct: 178 FSWSYILGWVAVLMTFFAGIFYM 200


>gi|153945846 inositol 1,4,5-triphosphate receptor, type 3 [Homo
            sapiens]
          Length = 2671

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 14/47 (29%), Positives = 23/47 (48%)

Query: 14   TSAALLFIATIDNAWWVGNEFFADVWRICTKNTKYRRDETTDFYYLT 60
            T   +  I T ++ W +   F  D+ R+C+K  K   D T + Y L+
Sbjct: 1424 TEVEMKEIYTSNHIWTLFENFTLDMARVCSKREKRVADPTLEKYVLS 1470


>gi|145699123 dedicator of cytokinesis 11 [Homo sapiens]
          Length = 2073

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 18/86 (20%), Positives = 37/86 (43%), Gaps = 5/86 (5%)

Query: 12   HITSAALLFIATIDNAWWVGN-----EFFADVWRICTKNTKYRRDETTDFYYLTKEGSYG 66
            H+ ++   FI+   +A++ G       F  +V + CT      R+E +   YL    ++ 
Sbjct: 1455 HVFASLRAFISKFPSAFFKGRVNMCAAFCYEVLKCCTSKISSTRNEASALLYLLMRNNFE 1514

Query: 67   YSYILAWVAFAFTFISSMMYLITEEA 92
            Y+    ++      I ++  LI + A
Sbjct: 1515 YTKRKTFLRTHLQIIIAVSQLIADVA 1540


>gi|110349767 calcium channel, voltage-dependent, L type, alpha 1S
            subunit [Homo sapiens]
          Length = 1873

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 16/94 (17%)

Query: 12   HITSAALLFIATIDNAWWV-----------GNEFFADVWRICTKNTKYRRDETTDFYYLT 60
            H+     + I+TI N   V           G + F   +  CT  +K   +E   +YY+ 
Sbjct: 916  HVVQCMFVAISTIGNIVLVTTLLQFMFACIGVQLFKGKFFRCTDLSKMTEEECRGYYYVY 975

Query: 61   KEGSYGYSYI--LAWVAFAFTF---ISSMMYLIT 89
            K+G      +    WV   F F   +S+MM L T
Sbjct: 976  KDGDPMQIELRHREWVHSDFHFDNVLSAMMSLFT 1009


>gi|188528658 transmembrane protein 182 [Homo sapiens]
          Length = 229

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 11/41 (26%), Positives = 21/41 (51%)

Query: 48  YRRDETTDFYYLTKEGSYGYSYILAWVAFAFTFISSMMYLI 88
           YR  +  D    T    YG+S+ LA     F+ ++ +++L+
Sbjct: 180 YRNMKMKDCLDFTPSVLYGWSFFLAPAGIFFSLLAGLLFLV 220


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.329    0.137    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,967,283
Number of Sequences: 37866
Number of extensions: 101820
Number of successful extensions: 243
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 223
Number of HSP's gapped (non-prelim): 22
length of query: 93
length of database: 18,247,518
effective HSP length: 64
effective length of query: 29
effective length of database: 15,824,094
effective search space: 458898726
effective search space used: 458898726
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.