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Search of human proteins with 169161052
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169161052 PREDICTED: hypothetical protein [Homo sapiens]
(75 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169161052 PREDICTED: hypothetical protein [Homo sapiens] 160 2e-40
gi|169215257 PREDICTED: hypothetical protein [Homo sapiens] 158 1e-39
gi|239741273 PREDICTED: hypothetical protein XP_002342153 [Homo ... 158 1e-39
gi|239752891 PREDICTED: hypothetical protein [Homo sapiens] 155 5e-39
gi|169161055 PREDICTED: hypothetical protein [Homo sapiens] 155 5e-39
gi|169161059 PREDICTED: hypothetical protein [Homo sapiens] 150 2e-37
gi|239758099 PREDICTED: hypothetical protein XP_002346294 [Homo ... 146 4e-36
gi|169178848 PREDICTED: hypothetical protein [Homo sapiens] 146 4e-36
gi|169174738 PREDICTED: hypothetical protein [Homo sapiens] 124 2e-29
gi|239743760 PREDICTED: hypothetical protein XP_002342953 [Homo ... 124 2e-29
gi|239747784 PREDICTED: hypothetical protein [Homo sapiens] 120 3e-28
gi|169163288 PREDICTED: hypothetical protein [Homo sapiens] 120 3e-28
gi|239749576 PREDICTED: hypothetical protein XP_002347089 [Homo ... 112 6e-26
gi|18201900 T-box 6 [Homo sapiens] 28 1.6
gi|5453638 AT rich interactive domain 3B [Homo sapiens] 27 4.6
gi|20127408 mitochondrial trifunctional protein, alpha subunit p... 26 6.1
gi|239755222 PREDICTED: hypothetical protein [Homo sapiens] 26 7.9
gi|239749727 PREDICTED: hypothetical protein XP_002347153 [Homo ... 26 7.9
gi|239743982 PREDICTED: hypothetical protein XP_002343001 [Homo ... 26 7.9
>gi|169161052 PREDICTED: hypothetical protein [Homo sapiens]
Length = 75
Score = 160 bits (406), Expect = 2e-40
Identities = 75/75 (100%), Positives = 75/75 (100%)
Query: 1 MVVLGMRTEEGHCIMLRGLAPSLGGTQVICKVLGLPSSIGFNTSSHLLFPATLQGAPTHF 60
MVVLGMRTEEGHCIMLRGLAPSLGGTQVICKVLGLPSSIGFNTSSHLLFPATLQGAPTHF
Sbjct: 1 MVVLGMRTEEGHCIMLRGLAPSLGGTQVICKVLGLPSSIGFNTSSHLLFPATLQGAPTHF 60
Query: 61 PCRWRQGGSTDNPPA 75
PCRWRQGGSTDNPPA
Sbjct: 61 PCRWRQGGSTDNPPA 75
>gi|169215257 PREDICTED: hypothetical protein [Homo sapiens]
Length = 75
Score = 158 bits (399), Expect = 1e-39
Identities = 73/75 (97%), Positives = 75/75 (100%)
Query: 1 MVVLGMRTEEGHCIMLRGLAPSLGGTQVICKVLGLPSSIGFNTSSHLLFPATLQGAPTHF 60
MVVLGM+TEEGHCIMLRGLAPSLGGTQVICKV+GLPSSIGFNTSSHLLFPATLQGAPTHF
Sbjct: 1 MVVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHF 60
Query: 61 PCRWRQGGSTDNPPA 75
PCRWRQGGSTDNPPA
Sbjct: 61 PCRWRQGGSTDNPPA 75
>gi|239741273 PREDICTED: hypothetical protein XP_002342153 [Homo
sapiens]
Length = 75
Score = 158 bits (399), Expect = 1e-39
Identities = 73/75 (97%), Positives = 75/75 (100%)
Query: 1 MVVLGMRTEEGHCIMLRGLAPSLGGTQVICKVLGLPSSIGFNTSSHLLFPATLQGAPTHF 60
MVVLGM+TEEGHCIMLRGLAPSLGGTQVICKV+GLPSSIGFNTSSHLLFPATLQGAPTHF
Sbjct: 1 MVVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHF 60
Query: 61 PCRWRQGGSTDNPPA 75
PCRWRQGGSTDNPPA
Sbjct: 61 PCRWRQGGSTDNPPA 75
>gi|239752891 PREDICTED: hypothetical protein [Homo sapiens]
Length = 75
Score = 155 bits (393), Expect = 5e-39
Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 1 MVVLGMRTEEGHCIMLRGLAPSLGGTQVICKVLGLPSSIGFNTSSHLLFPATLQGAPTHF 60
MVVLGM+TEEGHCIMLRGLAPSLGGTQVICKV+GLPSSIGFNTSSHLLFPATLQGAPTHF
Sbjct: 1 MVVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHF 60
Query: 61 PCRWRQGGSTDNPPA 75
PCRWRQG STDNPPA
Sbjct: 61 PCRWRQGASTDNPPA 75
>gi|169161055 PREDICTED: hypothetical protein [Homo sapiens]
Length = 75
Score = 155 bits (393), Expect = 5e-39
Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 1 MVVLGMRTEEGHCIMLRGLAPSLGGTQVICKVLGLPSSIGFNTSSHLLFPATLQGAPTHF 60
MVVLGM+TEEGHCIMLRGLAPSLGGTQVICKV+GLPSSIGFNTSSHLLFPATLQGAPTHF
Sbjct: 1 MVVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHF 60
Query: 61 PCRWRQGGSTDNPPA 75
PCRWRQG STDNPPA
Sbjct: 61 PCRWRQGASTDNPPA 75
>gi|169161059 PREDICTED: hypothetical protein [Homo sapiens]
Length = 75
Score = 150 bits (380), Expect = 2e-37
Identities = 71/75 (94%), Positives = 73/75 (97%)
Query: 1 MVVLGMRTEEGHCIMLRGLAPSLGGTQVICKVLGLPSSIGFNTSSHLLFPATLQGAPTHF 60
MVVLGM+TEEGHCIMLRGLA SLGGTQVICKV+GLPSSIGFNTSSHLLFPATLQGAPTHF
Sbjct: 1 MVVLGMQTEEGHCIMLRGLAHSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHF 60
Query: 61 PCRWRQGGSTDNPPA 75
PCRWRQGGSTDN PA
Sbjct: 61 PCRWRQGGSTDNLPA 75
>gi|239758099 PREDICTED: hypothetical protein XP_002346294 [Homo
sapiens]
Length = 75
Score = 146 bits (368), Expect = 4e-36
Identities = 69/75 (92%), Positives = 71/75 (94%)
Query: 1 MVVLGMRTEEGHCIMLRGLAPSLGGTQVICKVLGLPSSIGFNTSSHLLFPATLQGAPTHF 60
MVVLGM+TEEGHCIMLRGLAPSLGGTQVICKV+GLPSSIGFNTSSHLLFPATLQ A TH
Sbjct: 1 MVVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQVALTHL 60
Query: 61 PCRWRQGGSTDNPPA 75
PCRWRQGGSTD PPA
Sbjct: 61 PCRWRQGGSTDKPPA 75
>gi|169178848 PREDICTED: hypothetical protein [Homo sapiens]
Length = 75
Score = 146 bits (368), Expect = 4e-36
Identities = 69/75 (92%), Positives = 71/75 (94%)
Query: 1 MVVLGMRTEEGHCIMLRGLAPSLGGTQVICKVLGLPSSIGFNTSSHLLFPATLQGAPTHF 60
MVVLGM+TEEGHCIMLRGLAPSLGGTQVICKV+GLPSSIGFNTSSHLLFPATLQ A TH
Sbjct: 1 MVVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQVALTHL 60
Query: 61 PCRWRQGGSTDNPPA 75
PCRWRQGGSTD PPA
Sbjct: 61 PCRWRQGGSTDKPPA 75
>gi|169174738 PREDICTED: hypothetical protein [Homo sapiens]
Length = 75
Score = 124 bits (311), Expect = 2e-29
Identities = 59/75 (78%), Positives = 62/75 (82%)
Query: 1 MVVLGMRTEEGHCIMLRGLAPSLGGTQVICKVLGLPSSIGFNTSSHLLFPATLQGAPTHF 60
MVVLGM+ EEGH RGLAP LG TQV+CKV+GLPS GFNTSSHLLFPATLQGA TH
Sbjct: 1 MVVLGMQREEGHQAQQRGLAPPLGRTQVMCKVVGLPSGAGFNTSSHLLFPATLQGALTHL 60
Query: 61 PCRWRQGGSTDNPPA 75
PCRWRQG STD PPA
Sbjct: 61 PCRWRQGDSTDKPPA 75
>gi|239743760 PREDICTED: hypothetical protein XP_002342953 [Homo
sapiens]
Length = 75
Score = 124 bits (311), Expect = 2e-29
Identities = 59/75 (78%), Positives = 62/75 (82%)
Query: 1 MVVLGMRTEEGHCIMLRGLAPSLGGTQVICKVLGLPSSIGFNTSSHLLFPATLQGAPTHF 60
MVVLGM+ EEGH RGLAP LG TQV+CKV+GLPS GFNTSSHLLFPATLQGA TH
Sbjct: 1 MVVLGMQREEGHQAQQRGLAPPLGRTQVMCKVVGLPSGAGFNTSSHLLFPATLQGALTHL 60
Query: 61 PCRWRQGGSTDNPPA 75
PCRWRQG STD PPA
Sbjct: 61 PCRWRQGDSTDKPPA 75
>gi|239747784 PREDICTED: hypothetical protein [Homo sapiens]
Length = 75
Score = 120 bits (300), Expect = 3e-28
Identities = 58/75 (77%), Positives = 62/75 (82%)
Query: 1 MVVLGMRTEEGHCIMLRGLAPSLGGTQVICKVLGLPSSIGFNTSSHLLFPATLQGAPTHF 60
MVVLGM+TEEGH RGLAP LG TQV+CKV+G PSS GF+TSSHLLFPATLQGA TH
Sbjct: 1 MVVLGMQTEEGHQAQQRGLAPPLGETQVMCKVVGRPSSAGFDTSSHLLFPATLQGALTHL 60
Query: 61 PCRWRQGGSTDNPPA 75
CRWRQG STD PPA
Sbjct: 61 LCRWRQGDSTDKPPA 75
>gi|169163288 PREDICTED: hypothetical protein [Homo sapiens]
Length = 75
Score = 120 bits (300), Expect = 3e-28
Identities = 58/75 (77%), Positives = 62/75 (82%)
Query: 1 MVVLGMRTEEGHCIMLRGLAPSLGGTQVICKVLGLPSSIGFNTSSHLLFPATLQGAPTHF 60
MVVLGM+TEEGH RGLAP LG TQV+CKV+G PSS GF+TSSHLLFPATLQGA TH
Sbjct: 1 MVVLGMQTEEGHQAQQRGLAPPLGETQVMCKVVGRPSSAGFDTSSHLLFPATLQGALTHL 60
Query: 61 PCRWRQGGSTDNPPA 75
CRWRQG STD PPA
Sbjct: 61 LCRWRQGDSTDKPPA 75
>gi|239749576 PREDICTED: hypothetical protein XP_002347089 [Homo
sapiens]
Length = 375
Score = 112 bits (280), Expect = 6e-26
Identities = 56/74 (75%), Positives = 59/74 (79%)
Query: 2 VVLGMRTEEGHCIMLRGLAPSLGGTQVICKVLGLPSSIGFNTSSHLLFPATLQGAPTHFP 61
VVLGM+TEEG RGLAP LGGTQV+CKV GLPSS FNTSSH+LFP TLQGA TH P
Sbjct: 302 VVLGMQTEEGCRAEQRGLAPFLGGTQVLCKVGGLPSSAEFNTSSHVLFPGTLQGALTHLP 361
Query: 62 CRWRQGGSTDNPPA 75
RWRQG STD PPA
Sbjct: 362 YRWRQGDSTDKPPA 375
>gi|18201900 T-box 6 [Homo sapiens]
Length = 436
Score = 28.1 bits (61), Expect = 1.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 40 GFNTSSHLLFPATLQGAPTHFPCR 63
G + ++LL PA GAP+H P R
Sbjct: 343 GPSAEAYLLHPAAFHGAPSHLPTR 366
>gi|5453638 AT rich interactive domain 3B [Homo sapiens]
Length = 560
Score = 26.6 bits (57), Expect = 4.6
Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 32 VLGLPSSIGFNTSSHLLFPATL----QGAP 57
+LGL SS G NTSS + PAT GAP
Sbjct: 364 ILGLGSSSGTNTSSPRISPATTLRKGDGAP 393
>gi|20127408 mitochondrial trifunctional protein, alpha subunit
precursor [Homo sapiens]
Length = 763
Score = 26.2 bits (56), Expect = 6.1
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 15 MLRGLAPSLGGTQVICKVLGLPSSI 39
+L G P GGTQ + K++G+P+++
Sbjct: 174 VLLGALPGAGGTQRLPKMVGVPAAL 198
>gi|239755222 PREDICTED: hypothetical protein [Homo sapiens]
Length = 136
Score = 25.8 bits (55), Expect = 7.9
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 12/56 (21%)
Query: 21 PSLGGTQVICKVLGLPSSIGFNTSSHLLFPATLQGA--------PTHFPCRWRQGG 68
P++GG I V LP S ++HL + L G P F RWR+GG
Sbjct: 47 PAVGGGIAISLVTWLPRS----PAAHLPWRGQLPGHATPQLRRFPAQFRRRWRRGG 98
>gi|239749727 PREDICTED: hypothetical protein XP_002347153 [Homo
sapiens]
Length = 136
Score = 25.8 bits (55), Expect = 7.9
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 12/56 (21%)
Query: 21 PSLGGTQVICKVLGLPSSIGFNTSSHLLFPATLQGA--------PTHFPCRWRQGG 68
P++GG I V LP S ++HL + L G P F RWR+GG
Sbjct: 47 PAVGGGIAISLVTWLPRS----PAAHLPWRGQLPGHATPQLRRFPAQFRRRWRRGG 98
>gi|239743982 PREDICTED: hypothetical protein XP_002343001 [Homo
sapiens]
Length = 136
Score = 25.8 bits (55), Expect = 7.9
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 12/56 (21%)
Query: 21 PSLGGTQVICKVLGLPSSIGFNTSSHLLFPATLQGA--------PTHFPCRWRQGG 68
P++GG I V LP S ++HL + L G P F RWR+GG
Sbjct: 47 PAVGGGIAISLVTWLPRS----PAAHLPWRGQLPGHATPQLRRFPAQFRRRWRRGG 98
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.139 0.454
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,669,639
Number of Sequences: 37866
Number of extensions: 158605
Number of successful extensions: 287
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 271
Number of HSP's gapped (non-prelim): 19
length of query: 75
length of database: 18,247,518
effective HSP length: 47
effective length of query: 28
effective length of database: 16,467,816
effective search space: 461098848
effective search space used: 461098848
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.