Guide to the Human Genome
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Name: LIX1 Sequence: fasta or formatted (282aa) NCBI GI: 167466286
Description:

limb expression 1

Referenced in:

Additional Genes in Development

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         21           2
 C cysteine            2.1          6           2
 D aspartate           5.3         15           2
 E glutamate           8.2         23           2
 F phenylalanine       3.9         11           1
 G glycine             4.3         12           2
 H histidine           2.1          6           1
 I isoleucine          3.9         11           2
 K lysine              5.0         14           2
 L leucine            11.3         32           2
 M methionine          3.9         11           1
 N asparagine          2.1          6           1
 P proline             4.6         13           2
 Q glutamine           5.7         16           3
 R arginine            5.7         16           2
 S serine             10.6         30           2
 T threonine           4.3         12           1
 V valine              5.3         15           3
 W tryptophan          1.1          3           1
 Y tyrosine            3.2          9           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   limb expression 1 
LIX1L                 0.505   Lix1 homolog (mouse) like 
ANKRD31               0.013   PREDICTED: ankyrin repeat domain 31 
ANKRD31               0.013   PREDICTED: ankyrin repeat domain 31 
ANKRD31               0.013   PREDICTED: ankyrin repeat domain 31 
PDE4DIP               0.011   phosphodiesterase 4D interacting protein isoform 2 [...
PDE4DIP               0.011   phosphodiesterase 4D interacting protein isoform 5 [...
PDE4DIP               0.011   phosphodiesterase 4D interacting protein isoform 1 ...
CROCC                 0.011   ciliary rootlet coiled-coil 
ABCC4                 0.009   ATP-binding cassette, sub-family C, member 4 isofor...
LOC727927             0.009   PREDICTED: similar to phosphodiesterase 4D interact...
TUBGCP6               0.009   tubulin, gamma complex associated protein 6 
KANK4                 0.007   ankyrin repeat domain 38 
TCHH                  0.006   trichohyalin 
DMXL2                 0.006   Dmx-like 2 
TBC1D14               0.006   TBC1 domain family, member 14 isoform a 
TBC1D14               0.006   TBC1 domain family, member 14 isoform a 
NLRP6                 0.006   NLR family, pyrin domain containing 6 
AKD1                  0.006   adenylate kinase domain containing 1 isoform 1 [Hom...
CEP250                0.006   centrosomal protein 2 
KCTD3                 0.006   potassium channel tetramerisation domain containing ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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