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Search of human proteins with 166795287
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|166795287 fatty acid amide hydrolase [Homo sapiens]
(579 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|166795287 fatty acid amide hydrolase [Homo sapiens] 1171 0.0
gi|169160671 PREDICTED: similar to hCG2039305 [Homo sapiens] 166 5e-41
gi|169161659 PREDICTED: similar to hCG2039305 [Homo sapiens] 166 5e-41
gi|113408590 PREDICTED: similar to hCG2039305 [Homo sapiens] 166 5e-41
gi|195972892 fatty acid amide hydrolase 2 [Homo sapiens] 122 9e-28
gi|222831590 glutaminyl-tRNA synthase (glutamine-hydrolyzing)-li... 80 5e-15
gi|5902142 DNA polymerase sigma [Homo sapiens] 33 0.55
gi|119395750 keratin 1 [Homo sapiens] 33 0.72
gi|157388917 FEZ family zinc finger 2 [Homo sapiens] 33 0.72
gi|8051631 RNA binding protein (autoantigenic, hnRNP-associated ... 33 0.72
gi|21396480 RNA binding protein (autoantigenic, hnRNP-associated... 33 0.72
gi|148237270 hypermethylated in cancer 1 isoform 2 [Homo sapiens] 32 2.1
gi|61676186 hypermethylated in cancer 1 isoform 1 [Homo sapiens] 32 2.1
gi|227498241 actin-like 8 [Homo sapiens] 31 3.6
gi|150378498 fragile site-associated protein [Homo sapiens] 31 3.6
gi|134142062 acetyl-Coenzyme A carboxylase beta [Homo sapiens] 30 4.7
gi|24497501 forkhead box A1 [Homo sapiens] 30 4.7
gi|4504809 jun B proto-oncogene [Homo sapiens] 30 4.7
gi|24432032 zinc finger protein 503 [Homo sapiens] 30 4.7
gi|60593038 keratin associated protein 5-4 [Homo sapiens] 30 4.7
gi|122937319 even-skipped homeobox 2 [Homo sapiens] 30 6.1
gi|109255251 loricrin [Homo sapiens] 30 7.9
>gi|166795287 fatty acid amide hydrolase [Homo sapiens]
Length = 579
Score = 1171 bits (3030), Expect = 0.0
Identities = 579/579 (100%), Positives = 579/579 (100%)
Query: 1 MVQYELWAALPGASGVALACCFVAAAVALRWSGRRTARGAVVRARQRQRAGLENMDRAAQ 60
MVQYELWAALPGASGVALACCFVAAAVALRWSGRRTARGAVVRARQRQRAGLENMDRAAQ
Sbjct: 1 MVQYELWAALPGASGVALACCFVAAAVALRWSGRRTARGAVVRARQRQRAGLENMDRAAQ 60
Query: 61 RFRLQNPDLDSEALLALPLPQLVQKLHSRELAPEAVLFTYVGKAWEVNKGTNCVTSYLAD 120
RFRLQNPDLDSEALLALPLPQLVQKLHSRELAPEAVLFTYVGKAWEVNKGTNCVTSYLAD
Sbjct: 61 RFRLQNPDLDSEALLALPLPQLVQKLHSRELAPEAVLFTYVGKAWEVNKGTNCVTSYLAD 120
Query: 121 CETQLSQAPRQGLLYGVPVSLKECFTYKGQDSTLGLSLNEGVPAECDSVVVHVLKLQGAV 180
CETQLSQAPRQGLLYGVPVSLKECFTYKGQDSTLGLSLNEGVPAECDSVVVHVLKLQGAV
Sbjct: 121 CETQLSQAPRQGLLYGVPVSLKECFTYKGQDSTLGLSLNEGVPAECDSVVVHVLKLQGAV 180
Query: 181 PFVHTNVPQSMFSYDCSNPLFGQTVNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGG 240
PFVHTNVPQSMFSYDCSNPLFGQTVNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGG
Sbjct: 181 PFVHTNVPQSMFSYDCSNPLFGQTVNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGG 240
Query: 241 SIRFPSSFCGICGLKPTGNRLSKSGLKGCVYGQEAVRLSVGPMARDVESLALCLRALLCE 300
SIRFPSSFCGICGLKPTGNRLSKSGLKGCVYGQEAVRLSVGPMARDVESLALCLRALLCE
Sbjct: 241 SIRFPSSFCGICGLKPTGNRLSKSGLKGCVYGQEAVRLSVGPMARDVESLALCLRALLCE 300
Query: 301 DMFRLDPTVPPLPFREEVYTSSQPLRVGYYETDNYTMPSPAMRRAVLETKQSLEAAGHTL 360
DMFRLDPTVPPLPFREEVYTSSQPLRVGYYETDNYTMPSPAMRRAVLETKQSLEAAGHTL
Sbjct: 301 DMFRLDPTVPPLPFREEVYTSSQPLRVGYYETDNYTMPSPAMRRAVLETKQSLEAAGHTL 360
Query: 361 VPFLPSNIPHALETLSTGGLFSDGGHTFLQNFKGDFVDPCLGDLVSILKLPQWLKGLLAF 420
VPFLPSNIPHALETLSTGGLFSDGGHTFLQNFKGDFVDPCLGDLVSILKLPQWLKGLLAF
Sbjct: 361 VPFLPSNIPHALETLSTGGLFSDGGHTFLQNFKGDFVDPCLGDLVSILKLPQWLKGLLAF 420
Query: 421 LVKPLLPRLSAFLSNMKSRSAGKLWELQHEIEVYRKTVIAQWRALDLDVVLTPMLAPALD 480
LVKPLLPRLSAFLSNMKSRSAGKLWELQHEIEVYRKTVIAQWRALDLDVVLTPMLAPALD
Sbjct: 421 LVKPLLPRLSAFLSNMKSRSAGKLWELQHEIEVYRKTVIAQWRALDLDVVLTPMLAPALD 480
Query: 481 LNAPGRATGAVSYTMLYNCLDFPAGVVPVTTVTAEDEAQMEHYRGYFGDIWDKMLQKGMK 540
LNAPGRATGAVSYTMLYNCLDFPAGVVPVTTVTAEDEAQMEHYRGYFGDIWDKMLQKGMK
Sbjct: 481 LNAPGRATGAVSYTMLYNCLDFPAGVVPVTTVTAEDEAQMEHYRGYFGDIWDKMLQKGMK 540
Query: 541 KSVGLPVAVQCVALPWQEELCLRFMREVERLMTPEKQSS 579
KSVGLPVAVQCVALPWQEELCLRFMREVERLMTPEKQSS
Sbjct: 541 KSVGLPVAVQCVALPWQEELCLRFMREVERLMTPEKQSS 579
>gi|169160671 PREDICTED: similar to hCG2039305 [Homo sapiens]
Length = 219
Score = 166 bits (420), Expect = 5e-41
Identities = 84/189 (44%), Positives = 124/189 (65%), Gaps = 1/189 (0%)
Query: 389 LQNFKGDFVDPCLGDLVSILKLPQWLKGLLAFLVKPLLPRLSAFLSNMKS-RSAGKLWEL 447
+++ +GD VDP + +V+ L LP K LA++ K + P+ S L ++ + KLWE
Sbjct: 28 IKDLEGDIVDPSIKGMVNQLCLPDPFKCFLAWIPKYIDPQTSQHLEEIRGVGTPKKLWEQ 87
Query: 448 QHEIEVYRKTVIAQWRALDLDVVLTPMLAPALDLNAPGRATGAVSYTMLYNCLDFPAGVV 507
+E Y + IA+WR+LDLDV+L P+L A + + A+ + SY LYN LDFPAGVV
Sbjct: 88 HTAVEEYEQEFIAKWRSLDLDVLLVPVLGSAFYIGSSSLASESQSYVTLYNLLDFPAGVV 147
Query: 508 PVTTVTAEDEAQMEHYRGYFGDIWDKMLQKGMKKSVGLPVAVQCVALPWQEELCLRFMRE 567
PVT VT +DE ++ Y+G +GD DK + ++ SVG+ V VQC+ALPW+EELCLRFM+E
Sbjct: 148 PVTIVTLQDEEELAFYKGCYGDSSDKNFSEAVRGSVGVLVTVQCIALPWEEELCLRFMKE 207
Query: 568 VERLMTPEK 576
V+ L+ ++
Sbjct: 208 VDTLVKNQR 216
>gi|169161659 PREDICTED: similar to hCG2039305 [Homo sapiens]
Length = 219
Score = 166 bits (420), Expect = 5e-41
Identities = 84/189 (44%), Positives = 124/189 (65%), Gaps = 1/189 (0%)
Query: 389 LQNFKGDFVDPCLGDLVSILKLPQWLKGLLAFLVKPLLPRLSAFLSNMKS-RSAGKLWEL 447
+++ +GD VDP + +V+ L LP K LA++ K + P+ S L ++ + KLWE
Sbjct: 28 IKDLEGDIVDPSIKGMVNQLCLPDPFKCFLAWIPKYIDPQTSQHLEEIRGVGTPKKLWEQ 87
Query: 448 QHEIEVYRKTVIAQWRALDLDVVLTPMLAPALDLNAPGRATGAVSYTMLYNCLDFPAGVV 507
+E Y + IA+WR+LDLDV+L P+L A + + A+ + SY LYN LDFPAGVV
Sbjct: 88 HTAVEEYEQEFIAKWRSLDLDVLLVPVLGSAFYIGSSSLASESQSYVTLYNLLDFPAGVV 147
Query: 508 PVTTVTAEDEAQMEHYRGYFGDIWDKMLQKGMKKSVGLPVAVQCVALPWQEELCLRFMRE 567
PVT VT +DE ++ Y+G +GD DK + ++ SVG+ V VQC+ALPW+EELCLRFM+E
Sbjct: 148 PVTIVTLQDEEELAFYKGCYGDSSDKNFSEAVRGSVGVLVTVQCIALPWEEELCLRFMKE 207
Query: 568 VERLMTPEK 576
V+ L+ ++
Sbjct: 208 VDTLVKNQR 216
>gi|113408590 PREDICTED: similar to hCG2039305 [Homo sapiens]
Length = 219
Score = 166 bits (420), Expect = 5e-41
Identities = 84/189 (44%), Positives = 124/189 (65%), Gaps = 1/189 (0%)
Query: 389 LQNFKGDFVDPCLGDLVSILKLPQWLKGLLAFLVKPLLPRLSAFLSNMKS-RSAGKLWEL 447
+++ +GD VDP + +V+ L LP K LA++ K + P+ S L ++ + KLWE
Sbjct: 28 IKDLEGDIVDPSIKGMVNQLCLPDPFKCFLAWIPKYIDPQTSQHLEEIRGVGTPKKLWEQ 87
Query: 448 QHEIEVYRKTVIAQWRALDLDVVLTPMLAPALDLNAPGRATGAVSYTMLYNCLDFPAGVV 507
+E Y + IA+WR+LDLDV+L P+L A + + A+ + SY LYN LDFPAGVV
Sbjct: 88 HTAVEEYEQEFIAKWRSLDLDVLLVPVLGSAFYIGSSSLASESQSYVTLYNLLDFPAGVV 147
Query: 508 PVTTVTAEDEAQMEHYRGYFGDIWDKMLQKGMKKSVGLPVAVQCVALPWQEELCLRFMRE 567
PVT VT +DE ++ Y+G +GD DK + ++ SVG+ V VQC+ALPW+EELCLRFM+E
Sbjct: 148 PVTIVTLQDEEELAFYKGCYGDSSDKNFSEAVRGSVGVLVTVQCIALPWEEELCLRFMKE 207
Query: 568 VERLMTPEK 576
V+ L+ ++
Sbjct: 208 VDTLVKNQR 216
>gi|195972892 fatty acid amide hydrolase 2 [Homo sapiens]
Length = 532
Score = 122 bits (306), Expect = 9e-28
Identities = 81/260 (31%), Positives = 127/260 (48%), Gaps = 15/260 (5%)
Query: 61 RFRLQNPDLDSEALLALPLPQLVQKLHSRELAPEAVLFTYVGKAWEVNKGTNCVTSY--- 117
+F + P +E LL L QL + + R++ V+ Y+ + +VN N + Y
Sbjct: 35 KFASKTPRPVTEPLLLLSGMQLAKLIRQRKVKCIDVVQAYINRIKDVNPMINGIVKYRFE 94
Query: 118 ------------LADCETQLSQAPRQGLLYGVPVSLKECFTYKGQDSTLGLSLNEGVPAE 165
LA+ + + + GVP+++KE F +G ++ GL A+
Sbjct: 95 EAMKEAHAVDQKLAEKQEDEATLENKWPFLGVPLTVKEAFQLQGMPNSSGLMNRRDAIAK 154
Query: 166 CDSVVVHVLKLQGAVPFVHTNVPQSMFSYDCSNPLFGQTVNPWKSSKSPGGSSGGEGALI 225
D+ VV +LK GA+P TN + Y+ SN ++G++ NP+ GGSSGGEG +
Sbjct: 155 TDATVVALLKGAGAIPLGITNCSELCMWYESSNKIYGRSNNPYDLQHIVGGSSGGEGCTL 214
Query: 226 GSGGSPLGLGTDIGGSIRFPSSFCGICGLKPTGNRLSKSGLKGCVYGQEAVRLSVGPMAR 285
+ S +G+G+DIGGSIR P+ F GI G KP+ + G G + + L GPM R
Sbjct: 215 AAACSVIGVGSDIGGSIRMPAFFNGIFGHKPSPGVVPNKGQFPLAVGAQELFLCTGPMCR 274
Query: 286 DVESLALCLRALLCEDMFRL 305
E LA L+ + + RL
Sbjct: 275 YAEDLAPMLKVMAGPGIKRL 294
>gi|222831590 glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like
1 [Homo sapiens]
Length = 528
Score = 80.1 bits (196), Expect = 5e-15
Identities = 57/202 (28%), Positives = 91/202 (45%), Gaps = 24/202 (11%)
Query: 120 DCETQLSQAPRQGLLYGVPVSLKECFTYKGQDSTLGLSLNEGVPAECDSVVVHVLKLQGA 179
+ E + G L G+P+++K+ F+ G ++T ++ +G ++ VV L QGA
Sbjct: 54 ESEKRYKNGQSLGDLDGIPIAVKDNFSTSGIETTCASNMLKGYIPPYNATVVQKLLDQGA 113
Query: 180 VPFVHTNVPQSMFSYDCSNPLFGQTVNPWKSSKS--------------------PGGSSG 219
+ TN+ + ++ +FG NPW SK GGSSG
Sbjct: 114 LLMGKTNLDEFAMGSGSTDGVFGPVKNPWSYSKQYREKRKQNPHSENEDSDWLITGGSSG 173
Query: 220 GEGALIGSGGSPLGLGTDIGGSIRFPSSFCGICGLKPTGNRLSKSGLKGCVYGQEAVRLS 279
G A + + LG+D GGS R P++ CG+ G KP+ +S+ GL V +
Sbjct: 174 GSAAAVSAFTCYAALGSDTGGSTRNPAAHCGLVGFKPSYGLVSRHGLIPLVNSMDV---- 229
Query: 280 VGPMARDVESLALCLRALLCED 301
G + R V+ A+ L AL D
Sbjct: 230 PGILTRCVDDAAIVLGALAGPD 251
>gi|5902142 DNA polymerase sigma [Homo sapiens]
Length = 542
Score = 33.5 bits (75), Expect = 0.55
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 307 PTVPPLPFREEVYTSSQPLRVGYYETDNYTMPSPAM-------RRAVLETKQSLEAAGHT 359
PT P+P + T+S+ L + +T+P P + R+A +E SL+A H
Sbjct: 398 PTALPMPSGKPQPTTSRTLIMTTNNQTRFTIPPPTLGVAPVPCRQAGVEGTASLKAVHHM 457
Query: 360 LVPFLPSNIPHALET 374
P +PS P+ L +
Sbjct: 458 SSPAIPSASPNPLSS 472
>gi|119395750 keratin 1 [Homo sapiens]
Length = 644
Score = 33.1 bits (74), Expect = 0.72
Identities = 31/84 (36%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 189 QSMFSYDCSNPLFGQTVNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSSF 248
+S S +C+ P +V+ ++ S GGS GG G GSGGS G G GGS + S
Sbjct: 490 ESRMSGECA-PNVSVSVSTSHTTISGGGSRGGGGGGYGSGGSSYGSG---GGS--YGSGG 543
Query: 249 CGICGLKPTGNRLSKSGLKGCVYG 272
G G G+ S G G YG
Sbjct: 544 GGGGGRGSYGSGGSSYGSGGGSYG 567
>gi|157388917 FEZ family zinc finger 2 [Homo sapiens]
Length = 459
Score = 33.1 bits (74), Expect = 0.72
Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 10/76 (13%)
Query: 187 VPQSMFSYDCSNPLFGQTVNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPS 246
+P Y+ + WKSS GG GG G GG G G + G+
Sbjct: 74 IPLQPLGYEVPSKTLLSYSELWKSSLRAGGGGGG-----GGGGGGGGGGAPVCGASGLCK 128
Query: 247 SFCGIC-----GLKPT 257
+ CG+C GL P+
Sbjct: 129 TNCGVCCKAELGLAPS 144
>gi|8051631 RNA binding protein (autoantigenic, hnRNP-associated
with lethal yellow) long isoform [Homo sapiens]
Length = 306
Score = 33.1 bits (74), Expect = 0.72
Identities = 25/64 (39%), Positives = 29/64 (45%), Gaps = 10/64 (15%)
Query: 203 QTVNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSSFCGICGLKPTGNRLS 262
Q NP K GG +GG G GSGG G G GGS R P+ P N S
Sbjct: 215 QKANPDGKKKGDGGGAGGGGGGGGSGGGGSG-GGGGGGSSRPPA---------PQENTTS 264
Query: 263 KSGL 266
++GL
Sbjct: 265 EAGL 268
>gi|21396480 RNA binding protein (autoantigenic, hnRNP-associated
with lethal yellow) short isoform [Homo sapiens]
Length = 290
Score = 33.1 bits (74), Expect = 0.72
Identities = 25/64 (39%), Positives = 29/64 (45%), Gaps = 10/64 (15%)
Query: 203 QTVNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSSFCGICGLKPTGNRLS 262
Q NP K GG +GG G GSGG G G GGS R P+ P N S
Sbjct: 199 QKANPDGKKKGDGGGAGGGGGGGGSGGGGSG-GGGGGGSSRPPA---------PQENTTS 248
Query: 263 KSGL 266
++GL
Sbjct: 249 EAGL 252
>gi|148237270 hypermethylated in cancer 1 isoform 2 [Homo sapiens]
Length = 733
Score = 31.6 bits (70), Expect = 2.1
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 215 GGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSSFCGICGLKPTGNRLS 262
GG++G GAL G GG P G D G + FP + L T +LS
Sbjct: 616 GGAAGAAGALAGLGGLPGVPGPDGKGKLDFPEGVFAVARL--TAEQLS 661
>gi|61676186 hypermethylated in cancer 1 isoform 1 [Homo sapiens]
Length = 714
Score = 31.6 bits (70), Expect = 2.1
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 215 GGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSSFCGICGLKPTGNRLS 262
GG++G GAL G GG P G D G + FP + L T +LS
Sbjct: 597 GGAAGAAGALAGLGGLPGVPGPDGKGKLDFPEGVFAVARL--TAEQLS 642
>gi|227498241 actin-like 8 [Homo sapiens]
Length = 366
Score = 30.8 bits (68), Expect = 3.6
Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 18/114 (15%)
Query: 329 YYETDNYTMPSPAMRRAVLETKQSLEAAGHTLVPFLPSNIPHALETLSTGGLFSDGGHTF 388
++ + P P++ RA++E+ +S E +L P L S++ + GG+T
Sbjct: 259 FFSPQVFEQPGPSIPRAIVESVESCEI---SLRPLLVSHV------------MACGGNTL 303
Query: 389 LQNFKGDFVDPCLGDLVSILKLPQW---LKGLLAFLVKPLLPRLSAFLSNMKSR 439
F +GD VS K W + +L ++ LS + S SR
Sbjct: 304 YPGFTKRLFRELMGDHVSSTKATVWEGSNRNFSVWLGASVVAHLSTYQSEWMSR 357
>gi|150378498 fragile site-associated protein [Homo sapiens]
Length = 5005
Score = 30.8 bits (68), Expect = 3.6
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 424 PLLPRLSAFLSNMKSRSAGKLWELQHEIEVYRKTVIAQWRALDLDVVLTPMLAPALD 480
P P N + + W L + R T I + + +D+VLTP++A ALD
Sbjct: 1583 PYTPLEKKLADNTDDETLTEEWTLDQPVSQTRTTAIVEVKGT-VDIVLTPLVAEALD 1638
>gi|134142062 acetyl-Coenzyme A carboxylase beta [Homo sapiens]
Length = 2458
Score = 30.4 bits (67), Expect = 4.7
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
Query: 386 HTFLQNFKGDFVDPCLGDLVSILKLPQWLKGLLAFLVKPLLPRLSAFLSNMKSRSAGKLW 445
H+ L+N CL + V +KL +W++ L+ L P LP L L + + AG+
Sbjct: 997 HSVLENLTNVMSGFCLPEPVFSIKLKEWVQKLMMTLRHPSLPLLE--LQEIMTSVAGR-- 1052
Query: 446 ELQHEIEVYRKTVIAQWRALDLDVVL----TPMLAPALDLNA 483
+ +E + V+AQ+ A ++ VL + +A LD +A
Sbjct: 1053 -IPAPVEKSVRRVMAQY-ASNITSVLCQFPSQQIATILDCHA 1092
>gi|24497501 forkhead box A1 [Homo sapiens]
Length = 472
Score = 30.4 bits (67), Expect = 4.7
Identities = 14/55 (25%), Positives = 27/55 (49%)
Query: 186 NVPQSMFSYDCSNPLFGQTVNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGG 240
N+ + F+ +NP G ++P + PGGS+G ++ +G + +G G
Sbjct: 58 NMTPASFNMSYANPGLGAGLSPGAVAGMPGGSAGAMNSMTAAGVTAMGTALSPSG 112
>gi|4504809 jun B proto-oncogene [Homo sapiens]
Length = 347
Score = 30.4 bits (67), Expect = 4.7
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 190 SMFSYDCSNP-LFGQTVNPWKSSKSPGGSSGGEGALIGSGGSPL-GLGTDIGGSIRFPSS 247
S+ Y P L +P++S K+PG G G G GGS G G+D G S++ SS
Sbjct: 28 SLHDYKLLKPSLAVNLADPYRSLKAPGAR--GPGPEGGGGGSYFSGQGSDTGASLKLASS 85
>gi|24432032 zinc finger protein 503 [Homo sapiens]
Length = 646
Score = 30.4 bits (67), Expect = 4.7
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 207 PWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSSFC 249
P K PGG GG G G GG G+ ++ G R PS+ C
Sbjct: 181 PGSDKKEPGGGGGGGG---GGGGGGGGVSSEKSG-FRVPSATC 219
>gi|60593038 keratin associated protein 5-4 [Homo sapiens]
Length = 288
Score = 30.4 bits (67), Expect = 4.7
Identities = 23/63 (36%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 210 SSKSPGGSSGGEGALIGSGGSPLGLGTDIG--GSIRFPSSFCGICGLKPTGNRLSKSGLK 267
S S GGS GG G+ GS G + G G GS CG CG G
Sbjct: 70 SCGSCGGSKGGYGSCGGSKGGCVSCGGSKGGCGSCGGSKGGCGSCGGSKGGCGSCGGSKG 129
Query: 268 GCV 270
GCV
Sbjct: 130 GCV 132
>gi|122937319 even-skipped homeobox 2 [Homo sapiens]
Length = 476
Score = 30.0 bits (66), Expect = 6.1
Identities = 16/36 (44%), Positives = 18/36 (50%)
Query: 215 GGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSSFCG 250
GG GG G G GG+ G G+D G S P S G
Sbjct: 414 GGGGGGGGGGGGGGGAGAGGGSDFGCSAAAPRSESG 449
>gi|109255251 loricrin [Homo sapiens]
Length = 312
Score = 29.6 bits (65), Expect = 7.9
Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 210 SSKSPGGSSG-GEGALIGSGGSPLGLGTDIGG 240
SS GGSSG G G +I GGS G G+ GG
Sbjct: 249 SSGCGGGSSGIGSGCIISGGGSVCGGGSSGGG 280
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.136 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,507,733
Number of Sequences: 37866
Number of extensions: 1129467
Number of successful extensions: 3458
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 3376
Number of HSP's gapped (non-prelim): 74
length of query: 579
length of database: 18,247,518
effective HSP length: 108
effective length of query: 471
effective length of database: 14,157,990
effective search space: 6668413290
effective search space used: 6668413290
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.