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Search of human proteins with 16506281
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|16506281 clarin 1 isoform c [Homo sapiens]
(120 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|16506281 clarin 1 isoform c [Homo sapiens] 244 1e-65
gi|28144908 clarin 1 isoform a [Homo sapiens] 215 7e-57
gi|150010645 clarin 2 [Homo sapiens] 74 2e-14
gi|22748685 clarin 3 [Homo sapiens] 56 5e-09
gi|239754660 PREDICTED: hypothetical protein [Homo sapiens] 30 0.55
gi|239749194 PREDICTED: hypothetical protein XP_002346946 [Homo ... 30 0.55
gi|239743274 PREDICTED: hypothetical protein XP_002342783 [Homo ... 30 0.55
gi|239508955 PREDICTED: hypothetical protein [Homo sapiens] 30 0.55
gi|4507693 tuberous sclerosis 1 protein isoform 1 [Homo sapiens] 28 1.2
gi|241666462 tuberous sclerosis 1 protein isoform 3 [Homo sapiens] 28 1.2
gi|41872646 cullin 7 [Homo sapiens] 27 2.7
gi|170650643 solute carrier family 22, member 23 isoform a [Homo... 27 2.7
gi|48526516 solute carrier family 22, member 23 isoform b [Homo ... 27 2.7
gi|157738623 olfactory receptor, family 51, subfamily B, member ... 27 3.6
gi|187828892 calcium channel, alpha 1A subunit isoform 4 [Homo s... 26 7.9
gi|187828880 calcium channel, alpha 1A subunit isoform 3 [Homo s... 26 7.9
gi|157426873 tachykinin receptor 2 [Homo sapiens] 26 7.9
gi|148747864 JAW1-related protein isoform a [Homo sapiens] 26 7.9
gi|154091334 JAW1-related protein isoform c [Homo sapiens] 26 7.9
gi|154091332 JAW1-related protein isoform b [Homo sapiens] 26 7.9
gi|148728182 JAW1-related protein isoform b [Homo sapiens] 26 7.9
gi|158081769 olfactory receptor, family 51, subfamily B, member ... 26 7.9
>gi|16506281 clarin 1 isoform c [Homo sapiens]
Length = 120
Score = 244 bits (622), Expect = 1e-65
Identities = 120/120 (100%), Positives = 120/120 (100%)
Query: 1 MQALQQQPVFPDLLKAIPVSIHVNVILFSAILIVLTMVGTAFFMYNAFGKPFETLHGPLG 60
MQALQQQPVFPDLLKAIPVSIHVNVILFSAILIVLTMVGTAFFMYNAFGKPFETLHGPLG
Sbjct: 1 MQALQQQPVFPDLLKAIPVSIHVNVILFSAILIVLTMVGTAFFMYNAFGKPFETLHGPLG 60
Query: 61 LYLLSFISGSCGCLVMILFASEVKIHHLSEKIANYKEGTYVYKTQSEKYTTSFWLTKGHS 120
LYLLSFISGSCGCLVMILFASEVKIHHLSEKIANYKEGTYVYKTQSEKYTTSFWLTKGHS
Sbjct: 61 LYLLSFISGSCGCLVMILFASEVKIHHLSEKIANYKEGTYVYKTQSEKYTTSFWLTKGHS 120
>gi|28144908 clarin 1 isoform a [Homo sapiens]
Length = 232
Score = 215 bits (547), Expect = 7e-57
Identities = 105/106 (99%), Positives = 106/106 (100%)
Query: 10 FPDLLKAIPVSIHVNVILFSAILIVLTMVGTAFFMYNAFGKPFETLHGPLGLYLLSFISG 69
FPDLLKAIPVSIHVNVILFSAILIVLTMVGTAFFMYNAFGKPFETLHGPLGLYLLSFISG
Sbjct: 86 FPDLLKAIPVSIHVNVILFSAILIVLTMVGTAFFMYNAFGKPFETLHGPLGLYLLSFISG 145
Query: 70 SCGCLVMILFASEVKIHHLSEKIANYKEGTYVYKTQSEKYTTSFWL 115
SCGCLVMILFASEVKIHHLSEKIANYKEGTYVYKTQSEKYTTSFW+
Sbjct: 146 SCGCLVMILFASEVKIHHLSEKIANYKEGTYVYKTQSEKYTTSFWV 191
>gi|150010645 clarin 2 [Homo sapiens]
Length = 232
Score = 74.3 bits (181), Expect = 2e-14
Identities = 34/110 (30%), Positives = 60/110 (54%)
Query: 6 QQPVFPDLLKAIPVSIHVNVILFSAILIVLTMVGTAFFMYNAFGKPFETLHGPLGLYLLS 65
Q +FP L+K + +HV ++L + + L +V F + N P+ + GP G+ L +
Sbjct: 82 QFTIFPHLVKELNAGLHVMILLLLFLALALALVSMGFAILNMIQVPYRAVSGPGGICLWN 141
Query: 66 FISGSCGCLVMILFASEVKIHHLSEKIANYKEGTYVYKTQSEKYTTSFWL 115
++G L + F + VK H L+E+IAN++E + + E+Y SFW+
Sbjct: 142 VLAGGVVALAIASFVAAVKFHDLTERIANFQEKLFQFVVVEEQYEESFWI 191
>gi|22748685 clarin 3 [Homo sapiens]
Length = 226
Score = 56.2 bits (134), Expect = 5e-09
Identities = 27/96 (28%), Positives = 49/96 (51%)
Query: 20 SIHVNVILFSAILIVLTMVGTAFFMYNAFGKPFETLHGPLGLYLLSFISGSCGCLVMILF 79
++H ILF + ++ +++ + F YN+ P++T GP G+Y + + S + MILF
Sbjct: 88 TLHSVTILFLVLSLITSLLSSGFTFYNSISNPYQTFLGPTGVYTWNGLGASFVFVTMILF 147
Query: 80 ASEVKIHHLSEKIANYKEGTYVYKTQSEKYTTSFWL 115
+ + + LSE++ K + Y SFWL
Sbjct: 148 VANTQSNQLSEELFQMLYPATTSKGTTHSYGYSFWL 183
>gi|239754660 PREDICTED: hypothetical protein [Homo sapiens]
Length = 221
Score = 29.6 bits (65), Expect = 0.55
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 15 KAIPVSIHV---NVILFSAILIVLTMVGTAFFMYNAFGKPF-ETLHGPLGLYLLSFISGS 70
K P+SI++ V L SA+ + T F M + F T L +SF +G+
Sbjct: 64 KPRPLSIYIILGRVFLLSAVFLAFV---TTFIMMPFASEFFPRTWKQNFVLACISFFTGA 120
Query: 71 CGCLVMILFASEVK 84
C L ++L A E+K
Sbjct: 121 CAFLALVLHALEIK 134
>gi|239749194 PREDICTED: hypothetical protein XP_002346946 [Homo
sapiens]
Length = 221
Score = 29.6 bits (65), Expect = 0.55
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 15 KAIPVSIHV---NVILFSAILIVLTMVGTAFFMYNAFGKPF-ETLHGPLGLYLLSFISGS 70
K P+SI++ V L SA+ + T F M + F T L +SF +G+
Sbjct: 64 KPRPLSIYIILGRVFLLSAVFLAFV---TTFIMMPFASEFFPRTWKQNFVLACISFFTGA 120
Query: 71 CGCLVMILFASEVK 84
C L ++L A E+K
Sbjct: 121 CAFLALVLHALEIK 134
>gi|239743274 PREDICTED: hypothetical protein XP_002342783 [Homo
sapiens]
Length = 221
Score = 29.6 bits (65), Expect = 0.55
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 15 KAIPVSIHV---NVILFSAILIVLTMVGTAFFMYNAFGKPF-ETLHGPLGLYLLSFISGS 70
K P+SI++ V L SA+ + T F M + F T L +SF +G+
Sbjct: 64 KPRPLSIYIILGRVFLLSAVFLAFV---TTFIMMPFASEFFPRTWKQNFVLACISFFTGA 120
Query: 71 CGCLVMILFASEVK 84
C L ++L A E+K
Sbjct: 121 CAFLALVLHALEIK 134
>gi|239508955 PREDICTED: hypothetical protein [Homo sapiens]
Length = 221
Score = 29.6 bits (65), Expect = 0.55
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 15 KAIPVSIHV---NVILFSAILIVLTMVGTAFFMYNAFGKPF-ETLHGPLGLYLLSFISGS 70
K P+SI++ V L SA+ + T F M + F T L +SF +G+
Sbjct: 64 KPRPLSIYIILGRVFLLSAVFLAFV---TTFIMMPFASEFFPRTWKQNFVLACISFFTGA 120
Query: 71 CGCLVMILFASEVK 84
C L ++L A E+K
Sbjct: 121 CAFLALVLHALEIK 134
>gi|4507693 tuberous sclerosis 1 protein isoform 1 [Homo sapiens]
Length = 1164
Score = 28.5 bits (62), Expect = 1.2
Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 4 LQQQPVFPDLLKAIPVSIHVNVILFSAILIVLTMV 38
L Q P+ P LLK + + V V+L + +L+++TM+
Sbjct: 107 LSQAPLLPSLLKCLKMDTDV-VVLTTGVLVLITML 140
>gi|241666462 tuberous sclerosis 1 protein isoform 3 [Homo sapiens]
Length = 1163
Score = 28.5 bits (62), Expect = 1.2
Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 4 LQQQPVFPDLLKAIPVSIHVNVILFSAILIVLTMV 38
L Q P+ P LLK + + V V+L + +L+++TM+
Sbjct: 107 LSQAPLLPSLLKCLKMDTDV-VVLTTGVLVLITML 140
>gi|41872646 cullin 7 [Homo sapiens]
Length = 1698
Score = 27.3 bits (59), Expect = 2.7
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 45 YNAFGKPFETLHGPLGLYLLSFISGSCGCLVMILFASEVKIHHLSEKIANY 95
+N L GP +LL+ +G G L+ + F +K H+SE+ A +
Sbjct: 1176 FNILQNSSSELFGPRAAFLLALQNGCAGALLKLPF---LKAAHVSEQFARH 1223
>gi|170650643 solute carrier family 22, member 23 isoform a [Homo
sapiens]
Length = 686
Score = 27.3 bits (59), Expect = 2.7
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 35 LTMVGTAFFMYNAFGKPFETLHGPLGLYLLSFISGSCG--CLVMILFASEVKIHHLSEKI 92
L + F M A P LH G +L I C C++ IL E + +L E I
Sbjct: 574 LVLASAGFGMLTA---PIIELHNQKGYFLHHIIFACCTLICIICILLLPESRDQNLPENI 630
Query: 93 AN 94
+N
Sbjct: 631 SN 632
>gi|48526516 solute carrier family 22, member 23 isoform b [Homo
sapiens]
Length = 405
Score = 27.3 bits (59), Expect = 2.7
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 35 LTMVGTAFFMYNAFGKPFETLHGPLGLYLLSFISGSCG--CLVMILFASEVKIHHLSEKI 92
L + F M A P LH G +L I C C++ IL E + +L E I
Sbjct: 293 LVLASAGFGMLTA---PIIELHNQKGYFLHHIIFACCTLICIICILLLPESRDQNLPENI 349
Query: 93 AN 94
+N
Sbjct: 350 SN 351
>gi|157738623 olfactory receptor, family 51, subfamily B, member 2
[Homo sapiens]
Length = 312
Score = 26.9 bits (58), Expect = 3.6
Identities = 12/33 (36%), Positives = 23/33 (69%)
Query: 9 VFPDLLKAIPVSIHVNVILFSAILIVLTMVGTA 41
++P +L ++ + + +ILFS ILI+ T++G A
Sbjct: 195 LYPVILISLTIFLDCLIILFSYILILNTVIGIA 227
>gi|187828892 calcium channel, alpha 1A subunit isoform 4 [Homo
sapiens]
Length = 2506
Score = 25.8 bits (55), Expect = 7.9
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 7 QPVFPDLLKAIPVSIHVNVILFSAILIVLTMVGTAFFM 44
Q V ++KA+ + + ++LF AILI ++G F+M
Sbjct: 213 QVVLKSIMKAMIPLLQIGLLLFFAILI-FAIIGLEFYM 249
>gi|187828880 calcium channel, alpha 1A subunit isoform 3 [Homo
sapiens]
Length = 2261
Score = 25.8 bits (55), Expect = 7.9
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 7 QPVFPDLLKAIPVSIHVNVILFSAILIVLTMVGTAFFM 44
Q V ++KA+ + + ++LF AILI ++G F+M
Sbjct: 213 QVVLKSIMKAMIPLLQIGLLLFFAILI-FAIIGLEFYM 249
>gi|157426873 tachykinin receptor 2 [Homo sapiens]
Length = 398
Score = 25.8 bits (55), Expect = 7.9
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 74 LVMILFASEVKIHHLSEKIANYKEGTYVYKTQSEKYTTSFWL 115
LV++ FA +HL + +++E Y +K + Y FWL
Sbjct: 254 LVVLTFAICWLPYHLYFILGSFQEDIYCHKFIQQVYLALFWL 295
>gi|148747864 JAW1-related protein isoform a [Homo sapiens]
Length = 903
Score = 25.8 bits (55), Expect = 7.9
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Query: 22 HVNVI-LFSAILIVLTMVGTAFFMYNAFGKPFETLHGPLG 60
H VI + +A+++VLT+V +YN++ E GPLG
Sbjct: 842 HWQVIWMMAAVMLVLTVV---LGLYNSYNSCAEQADGPLG 878
>gi|154091334 JAW1-related protein isoform c [Homo sapiens]
Length = 597
Score = 25.8 bits (55), Expect = 7.9
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Query: 22 HVNVI-LFSAILIVLTMVGTAFFMYNAFGKPFETLHGPLG 60
H VI + +A+++VLT+V +YN++ E GPLG
Sbjct: 536 HWQVIWMMAAVMLVLTVV---LGLYNSYNSCAEQADGPLG 572
>gi|154091332 JAW1-related protein isoform b [Homo sapiens]
Length = 821
Score = 25.8 bits (55), Expect = 7.9
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Query: 22 HVNVI-LFSAILIVLTMVGTAFFMYNAFGKPFETLHGPLG 60
H VI + +A+++VLT+V +YN++ E GPLG
Sbjct: 760 HWQVIWMMAAVMLVLTVV---LGLYNSYNSCAEQADGPLG 796
>gi|148728182 JAW1-related protein isoform b [Homo sapiens]
Length = 821
Score = 25.8 bits (55), Expect = 7.9
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Query: 22 HVNVI-LFSAILIVLTMVGTAFFMYNAFGKPFETLHGPLG 60
H VI + +A+++VLT+V +YN++ E GPLG
Sbjct: 760 HWQVIWMMAAVMLVLTVV---LGLYNSYNSCAEQADGPLG 796
>gi|158081769 olfactory receptor, family 51, subfamily B, member 4
[Homo sapiens]
Length = 310
Score = 25.8 bits (55), Expect = 7.9
Identities = 11/33 (33%), Positives = 22/33 (66%)
Query: 9 VFPDLLKAIPVSIHVNVILFSAILIVLTMVGTA 41
++P + ++ V + +I+FS ILI+ T++G A
Sbjct: 194 IYPIIQTSLTVFLDALIIIFSYILILKTVMGIA 226
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.326 0.139 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,088,426
Number of Sequences: 37866
Number of extensions: 138834
Number of successful extensions: 451
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 440
Number of HSP's gapped (non-prelim): 22
length of query: 120
length of database: 18,247,518
effective HSP length: 89
effective length of query: 31
effective length of database: 14,877,444
effective search space: 461200764
effective search space used: 461200764
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.