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Search of human proteins with 16163666
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|16163666 melanoma-associated antigen p97 isoform 2 precursor
[Homo sapiens]
(302 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|16163666 melanoma-associated antigen p97 isoform 2 precursor ... 625 e-179
gi|134244281 melanoma-associated antigen p97 isoform 1 precursor... 488 e-138
gi|54607120 lactotransferrin precursor [Homo sapiens] 191 5e-49
gi|4557871 transferrin [Homo sapiens] 188 6e-48
gi|33695155 hepsin [Homo sapiens] 33 0.40
gi|4504481 hepsin [Homo sapiens] 33 0.40
gi|145275213 coagulation factor XII precursor [Homo sapiens] 31 1.5
gi|150378520 zinc finger protein 594 [Homo sapiens] 30 2.0
gi|217035154 RCSD domain containing 1 [Homo sapiens] 29 4.5
gi|167466252 transmembrane protease, serine 11A isoform 2 [Homo ... 29 5.8
gi|167466250 transmembrane protease, serine 11A isoform 1 [Homo ... 29 5.8
gi|148746195 trichohyalin [Homo sapiens] 28 7.6
gi|58331253 obscurin, cytoskeletal calmodulin and titin-interact... 28 10.0
gi|148833506 obscurin, cytoskeletal calmodulin and titin-interac... 28 10.0
gi|165905591 LIM domain and actin binding 1 isoform c [Homo sapi... 28 10.0
gi|165905589 LIM domain and actin binding 1 isoform a [Homo sapi... 28 10.0
gi|7705373 LIM domain and actin binding 1 isoform b [Homo sapiens] 28 10.0
gi|92110053 CUB and Sushi multiple domains 2 [Homo sapiens] 28 10.0
gi|34328899 protein tyrosine phosphatase, non-receptor type 14 [... 28 10.0
gi|7662180 glycine-, glutamate-, thienylcyclohexylpiperidine-bin... 28 10.0
>gi|16163666 melanoma-associated antigen p97 isoform 2 precursor
[Homo sapiens]
Length = 302
Score = 625 bits (1612), Expect = e-179
Identities = 302/302 (100%), Positives = 302/302 (100%)
Query: 1 MRGPSGALWLLLALRTVLGGMEVRWCATSDPEQHKCGNMSEAFREAGIQPSLLCVRGTSA 60
MRGPSGALWLLLALRTVLGGMEVRWCATSDPEQHKCGNMSEAFREAGIQPSLLCVRGTSA
Sbjct: 1 MRGPSGALWLLLALRTVLGGMEVRWCATSDPEQHKCGNMSEAFREAGIQPSLLCVRGTSA 60
Query: 61 DHCVQLIAAQEADAITLDGGAIYEAGKEHGLKPVVGEVYDQEVGTSYYAVAVVRRSSHVT 120
DHCVQLIAAQEADAITLDGGAIYEAGKEHGLKPVVGEVYDQEVGTSYYAVAVVRRSSHVT
Sbjct: 61 DHCVQLIAAQEADAITLDGGAIYEAGKEHGLKPVVGEVYDQEVGTSYYAVAVVRRSSHVT 120
Query: 121 IDTLKGVKSCHTGINRTVGWNVPVGYLVESGRLSVMGCDVLKAVSDYFGGSCVPGAGETS 180
IDTLKGVKSCHTGINRTVGWNVPVGYLVESGRLSVMGCDVLKAVSDYFGGSCVPGAGETS
Sbjct: 121 IDTLKGVKSCHTGINRTVGWNVPVGYLVESGRLSVMGCDVLKAVSDYFGGSCVPGAGETS 180
Query: 181 YSESLCRLCRGDSSGEGVCDKSPLERYYDYSGAFRCLAEGAGDVAFVKHSTVLENTDESP 240
YSESLCRLCRGDSSGEGVCDKSPLERYYDYSGAFRCLAEGAGDVAFVKHSTVLENTDESP
Sbjct: 181 YSESLCRLCRGDSSGEGVCDKSPLERYYDYSGAFRCLAEGAGDVAFVKHSTVLENTDESP 240
Query: 241 SRRQTWTRSEEEEGECPAHEEARRTMRSSAGQAWKWAPVHRPQDESDKGEFGKRAKSRDM 300
SRRQTWTRSEEEEGECPAHEEARRTMRSSAGQAWKWAPVHRPQDESDKGEFGKRAKSRDM
Sbjct: 241 SRRQTWTRSEEEEGECPAHEEARRTMRSSAGQAWKWAPVHRPQDESDKGEFGKRAKSRDM 300
Query: 301 LG 302
LG
Sbjct: 301 LG 302
>gi|134244281 melanoma-associated antigen p97 isoform 1 precursor
[Homo sapiens]
Length = 738
Score = 488 bits (1257), Expect = e-138
Identities = 237/237 (100%), Positives = 237/237 (100%)
Query: 1 MRGPSGALWLLLALRTVLGGMEVRWCATSDPEQHKCGNMSEAFREAGIQPSLLCVRGTSA 60
MRGPSGALWLLLALRTVLGGMEVRWCATSDPEQHKCGNMSEAFREAGIQPSLLCVRGTSA
Sbjct: 1 MRGPSGALWLLLALRTVLGGMEVRWCATSDPEQHKCGNMSEAFREAGIQPSLLCVRGTSA 60
Query: 61 DHCVQLIAAQEADAITLDGGAIYEAGKEHGLKPVVGEVYDQEVGTSYYAVAVVRRSSHVT 120
DHCVQLIAAQEADAITLDGGAIYEAGKEHGLKPVVGEVYDQEVGTSYYAVAVVRRSSHVT
Sbjct: 61 DHCVQLIAAQEADAITLDGGAIYEAGKEHGLKPVVGEVYDQEVGTSYYAVAVVRRSSHVT 120
Query: 121 IDTLKGVKSCHTGINRTVGWNVPVGYLVESGRLSVMGCDVLKAVSDYFGGSCVPGAGETS 180
IDTLKGVKSCHTGINRTVGWNVPVGYLVESGRLSVMGCDVLKAVSDYFGGSCVPGAGETS
Sbjct: 121 IDTLKGVKSCHTGINRTVGWNVPVGYLVESGRLSVMGCDVLKAVSDYFGGSCVPGAGETS 180
Query: 181 YSESLCRLCRGDSSGEGVCDKSPLERYYDYSGAFRCLAEGAGDVAFVKHSTVLENTD 237
YSESLCRLCRGDSSGEGVCDKSPLERYYDYSGAFRCLAEGAGDVAFVKHSTVLENTD
Sbjct: 181 YSESLCRLCRGDSSGEGVCDKSPLERYYDYSGAFRCLAEGAGDVAFVKHSTVLENTD 237
Score = 233 bits (594), Expect = 2e-61
Identities = 130/288 (45%), Positives = 169/288 (58%), Gaps = 11/288 (3%)
Query: 23 VRWCATSDPEQHKCGNMSEAFREAGIQPSLLCVRGTSADHCVQLIAAQEADAITLDGGAI 82
+RWC S PE KCG+M+ AFR ++P + CV S HC++ I A++ DA+TL G I
Sbjct: 366 LRWCVLSTPEIQKCGDMAVAFRRQRLKPEIQCVSAKSPQHCMERIQAEQVDAVTLSGEDI 425
Query: 83 YEAGKEHGLKPVVGEVY-DQEVGTSYYAVAVVRR-SSHV-TIDTLKGVKSCHTGINRTVG 139
Y AGK +GL P GE Y ++ SYY VAVVRR SSH T+D L+G +SCH G G
Sbjct: 426 YTAGKTYGLVPAAGEHYAPEDSSNSYYVVAVVRRDSSHAFTLDELRGKRSCHAGFGSPAG 485
Query: 140 WNVPVGYLVESGRLSVMGCDVLKAVSDYFGGSCVPGAGETSYSESLCRLCRGDSSGEGVC 199
W+VPVG L++ G + CDVL AVS++F SCVP +Y SLC LC GD G C
Sbjct: 486 WDVPVGALIQRGFIRPKDCDVLTAVSEFFNASCVPVNNPKNYPSSLCALCVGDEQGRNKC 545
Query: 200 DKSPLERYYDYSGAFRCLAEGAGDVAFVKHSTVLENTDESPSRRQTWT---RSEEEEGEC 256
+ ERYY Y GAFRCL E AGDVAFV+H+TV +NT+ S + W RSE+ E C
Sbjct: 546 VGNSQERYYGYRGAFRCLVENAGDVAFVRHTTVFDNTNGHNS--EPWAAELRSEDYELLC 603
Query: 257 P--AHEEARRTMRSSAGQAWKWAPVHRPQDESDKGEFGKRAKSRDMLG 302
P A E + + Q A + RP D + +G K++D+ G
Sbjct: 604 PNGARAEVSQFAACNLAQIPPHAVMVRP-DTNIFTVYGLLDKAQDLFG 650
>gi|54607120 lactotransferrin precursor [Homo sapiens]
Length = 710
Score = 191 bits (486), Expect = 5e-49
Identities = 121/315 (38%), Positives = 171/315 (54%), Gaps = 27/315 (8%)
Query: 6 GALWLLLALRTVLGGMEVRWCATSDPEQHKCGNMSEAFREAGIQPSLLCVRGTSADHCVQ 65
GAL L LA R V+WCA S PE KC R+ P + C++ S C+Q
Sbjct: 12 GALGLCLAGRR----RSVQWCAVSQPEATKCFQWQRNMRKVR-GPPVSCIKRDSPIQCIQ 66
Query: 66 LIAAQEADAITLDGGAIYEAG-KEHGLKPVVGEVY--DQEVGTSYYAVAVVRRSSHVTID 122
IA ADA+TLDGG IYEAG + L+PV EVY +++ T YYAVAVV++ ++
Sbjct: 67 AIAENRADAVTLDGGFIYEAGLAPYKLRPVAAEVYGTERQPRTHYYAVAVVKKGGSFQLN 126
Query: 123 TLKGVKSCHTGINRTVGWNVPVGYLVESGRLSVMGCDVLKAVSDYFGGSCVPGAGETSYS 182
L+G+KSCHTG+ RT GWNVP+G L + + AV+ +F SCVPGA + +
Sbjct: 127 ELQGLKSCHTGLRRTAGWNVPIGTLRPFLNWTGPPEPIEAAVARFFSASCVPGADKGQF- 185
Query: 183 ESLCRLCRGDSSGEGVCDKSPLERYYDYSGAFRCLAEGAGDVAFVKHSTVLENTDESPSR 242
+LCRLC G +GE C S E Y+ YSGAF+CL +GAGDVAF++ STV E+ + R
Sbjct: 186 PNLCRLCAG--TGENKCAFSSQEPYFSYSGAFKCLRDGAGDVAFIRESTVFEDLSDEAER 243
Query: 243 RQ-------TWTRSEEEEGEC-----PAHEEARRTMRSSAGQAW---KWAPVHRPQDESD 287
+ + ++ +C P+H R++ W + A +D+S
Sbjct: 244 DEYELLCPDNTRKPVDKFKDCHLARVPSHAVVARSVNGKEDAIWNLLRQAQEKFGKDKSP 303
Query: 288 KGE-FGKRAKSRDML 301
K + FG + +D+L
Sbjct: 304 KFQLFGSPSGQKDLL 318
Score = 169 bits (428), Expect = 3e-42
Identities = 100/239 (41%), Positives = 132/239 (55%), Gaps = 32/239 (13%)
Query: 23 VRWCATSDPEQHKCGNMSEAFREAGIQPSLLCVRGTSADHCVQLIAAQEADAITLDGGAI 82
V WCA + E KC S + S+ C ++ + C+ L+ EADA++LDGG +
Sbjct: 364 VVWCAVGEQELRKCNQWSGLS-----EGSVTCSSASTTEDCIALVLKGEADAMSLDGGYV 418
Query: 83 YEAGKEHGLKPVVGEVYDQEVGTS------------YYAVAVVRRS-SHVTIDTLKGVKS 129
Y AGK GL PV+ E Y + + Y AVAVVRRS + +T +++KG KS
Sbjct: 419 YTAGK-CGLVPVLAENYKSQQSSDPDPNCVDRPVEGYLAVAVVRRSDTSLTWNSVKGKKS 477
Query: 130 CHTGINRTVGWNVPVGYLVESGRLSVMGCDVLKAVSDYFGGSCVPGAGETSYSESLCRLC 189
CHT ++RT GWN+P+G L C +YF SC PG+ S +LC LC
Sbjct: 478 CHTAVDRTAGWNIPMGLLFNQ----TGSCKF----DEYFSQSCAPGSDPRS---NLCALC 526
Query: 190 RGDSSGEGVCDKSPLERYYDYSGAFRCLAEGAGDVAFVKHSTVLENTDESPSRRQTWTR 248
GD GE C + ERYY Y+GAFRCLAE AGDVAFVK TVL+NTD + + W +
Sbjct: 527 IGDEQGENKCVPNSNERYYGYTGAFRCLAENAGDVAFVKDVTVLQNTD--GNNNEAWAK 583
>gi|4557871 transferrin [Homo sapiens]
Length = 698
Score = 188 bits (477), Expect = 6e-48
Identities = 124/330 (37%), Positives = 173/330 (52%), Gaps = 46/330 (13%)
Query: 1 MRGPSGALWL--LLALRTVLGGMEVRWCATSDPEQHKCGNMSEAFREA--GIQPSLLCVR 56
MR GAL + +L L + VRWCA S+ E KC + + + PS+ CV+
Sbjct: 1 MRLAVGALLVCAVLGLCLAVPDKTVRWCAVSEHEATKCQSFRDHMKSVIPSDGPSVACVK 60
Query: 57 GTSADHCVQLIAAQEADAITLDGGAIYEAG-KEHGLKPVVGEVYD--QEVGTSYYAVAVV 113
S C++ IAA EADA+TLD G +Y+A + LKPVV E Y ++ T YYAVAVV
Sbjct: 61 KASYLDCIRAIAANEADAVTLDAGLVYDAYLAPNNLKPVVAEFYGSKEDPQTFYYAVAVV 120
Query: 114 RRSSHVTIDTLKGVKSCHTGINRTVGWNVPVGYLVESGRLSVMGCDVL-------KAVSD 166
++ S ++ L+G KSCHTG+ R+ GWN+P+G L CD+ KAV++
Sbjct: 121 KKDSGFQMNQLRGKKSCHTGLGRSAGWNIPIGLLY---------CDLPEPRKPLEKAVAN 171
Query: 167 YFGGSCVPGAGETSYSESLCRLCRGDSSGEGVCDKSPLERYYDYSGAFRCLAEGAGDVAF 226
+F GSC P A T + + LC+LC G C S L +Y+ YSGAF+CL +GAGDVAF
Sbjct: 172 FFSGSCAPCADGTDFPQ-LCQLCPG-------CGCSTLNQYFGYSGAFKCLKDGAGDVAF 223
Query: 227 VKHSTVLENTDESPSRRQ------TWTRSEEEE------GECPAHEEARRTMRSSAGQAW 274
VKHST+ EN R Q TR +E + P+H R+M W
Sbjct: 224 VKHSTIFENLANKADRDQYELLCLDNTRKPVDEYKDCHLAQVPSHTVVARSMGGKEDLIW 283
Query: 275 K---WAPVHRPQDESDKGEFGKRAKSRDML 301
+ A H +D+S + + +D+L
Sbjct: 284 ELLNQAQEHFGKDKSKEFQLFSSPHGKDLL 313
Score = 157 bits (396), Expect = 1e-38
Identities = 105/274 (38%), Positives = 142/274 (51%), Gaps = 30/274 (10%)
Query: 23 VRWCATSDPEQHKCGNMSEAFREAGIQPSLLCVRGTSADHCVQLIAAQEADAITLDGGAI 82
V+WCA S E+ KC S + CV + + C+ I EADA++LDGG +
Sbjct: 361 VKWCALSHHERLKCDEWS-----VNSVGKIECVSAETTEDCIAKIMNGEADAMSLDGGFV 415
Query: 83 YEAGKEHGLKPVVGEVYDQEVG------TSYYAVAVVRRS-SHVTIDTLKGVKSCHTGIN 135
Y AGK GL PV+ E Y++ Y+AVAVV++S S +T D LKG KSCHT +
Sbjct: 416 YIAGK-CGLVPVLAENYNKSDNCEDTPEAGYFAVAVVKKSASDLTWDNLKGKKSCHTAVG 474
Query: 136 RTVGWNVPVGYLVESGRLSVMGCDVLKAVSDYFGGSCVPGAGETSYSESLCRLCRGDSSG 195
RT GWN+P+G L + C ++F C PG+ + S SLC+LC G SG
Sbjct: 475 RTAGWNIPMGLLYN----KINHC----RFDEFFSEGCAPGSKKDS---SLCKLCMG--SG 521
Query: 196 EGVCDKSPLERYYDYSGAFRCLAEGAGDVAFVKHSTVLENTDESPSRRQTWTRS-EEEEG 254
+C+ + E YY Y+GAFRCL E GDVAFVKH TV +NT W ++ E++
Sbjct: 522 LNLCEPNNKEGYYGYTGAFRCLVE-KGDVAFVKHQTVPQNT--GGKNPDPWAKNLNEKDY 578
Query: 255 ECPAHEEARRTMRSSAGQAWKWAPVHRPQDESDK 288
E + R+ + A AP H DK
Sbjct: 579 ELLCLDGTRKPVEEYANCHLARAPNHAVVTRKDK 612
>gi|33695155 hepsin [Homo sapiens]
Length = 417
Score = 32.7 bits (73), Expect = 0.40
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 132 TGINRTVGWNVPVGYLVESGRLSVMGCDVLKAVSDYFGGSCVPGAGETSYSESLCRLCRG 191
TG T + G L E+ R+ ++ DV +D++G P Y E C+G
Sbjct: 294 TGWGNTQYYGQQAGVLQEA-RVPIISNDVCNG-ADFYGNQIKPKMFCAGYPEGGIDACQG 351
Query: 192 DSSGEGVCDKS 202
DS G VC+ S
Sbjct: 352 DSGGPFVCEDS 362
>gi|4504481 hepsin [Homo sapiens]
Length = 417
Score = 32.7 bits (73), Expect = 0.40
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 132 TGINRTVGWNVPVGYLVESGRLSVMGCDVLKAVSDYFGGSCVPGAGETSYSESLCRLCRG 191
TG T + G L E+ R+ ++ DV +D++G P Y E C+G
Sbjct: 294 TGWGNTQYYGQQAGVLQEA-RVPIISNDVCNG-ADFYGNQIKPKMFCAGYPEGGIDACQG 351
Query: 192 DSSGEGVCDKS 202
DS G VC+ S
Sbjct: 352 DSGGPFVCEDS 362
>gi|145275213 coagulation factor XII precursor [Homo sapiens]
Length = 615
Score = 30.8 bits (68), Expect = 1.5
Identities = 19/58 (32%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 166 DYFGGSCVPGAGETSYSESLCRLCRGDSSGEGVCDKSPLERYYDYSGAFRCLAEGAGD 223
D G S +PG + E C+GDS G VC+ ER G G GD
Sbjct: 536 DVHGSSILPGMLCAGFLEGGTDACQGDSGGPLVCEDQAAERRLTLQGII-SWGSGCGD 592
>gi|150378520 zinc finger protein 594 [Homo sapiens]
Length = 807
Score = 30.4 bits (67), Expect = 2.0
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 225 AFVKHSTVLENTDESPSRRQTWTRSEEEEGECPAHEEARRTMRSSAGQAWK 275
AF+KH ++ +T E +T+++ EE GE H+EA+ + G+A++
Sbjct: 530 AFLKHQSL--HTGEKLECEKTFSQDEELRGEQKIHQEAKAYWCNQCGRAFQ 578
>gi|217035154 RCSD domain containing 1 [Homo sapiens]
Length = 416
Score = 29.3 bits (64), Expect = 4.5
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 236 TDESPSRRQTWTRSEEEEGECPAHEEARRTMRSSAGQAWKWAPVHRPQDESDKGEFGKRA 295
T+E+ + + SEE +G+ PA EE + ++S +A P++E GE +
Sbjct: 255 TEEAKNGEKARRSSEEVDGQHPAQEEVPESPQTSGPEAEN--RCGSPREEKPAGEEAEME 312
Query: 296 KSRDMLG 302
K+ ++ G
Sbjct: 313 KATEVKG 319
>gi|167466252 transmembrane protease, serine 11A isoform 2 [Homo
sapiens]
Length = 418
Score = 28.9 bits (63), Expect = 5.8
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 148 VESGRLSVMGCDVLKAVSDYFGGSCVPGAGETSYSESLCRLCRGDSSG 195
+ R+ ++ DV K Y G PG Y E + CRGDS G
Sbjct: 324 LREARVKIISDDVCKQPQVY-GNDIKPGMFCAGYMEGIYDACRGDSGG 370
>gi|167466250 transmembrane protease, serine 11A isoform 1 [Homo
sapiens]
Length = 421
Score = 28.9 bits (63), Expect = 5.8
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 148 VESGRLSVMGCDVLKAVSDYFGGSCVPGAGETSYSESLCRLCRGDSSG 195
+ R+ ++ DV K Y G PG Y E + CRGDS G
Sbjct: 327 LREARVKIISDDVCKQPQVY-GNDIKPGMFCAGYMEGIYDACRGDSGG 373
>gi|148746195 trichohyalin [Homo sapiens]
Length = 1943
Score = 28.5 bits (62), Expect = 7.6
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 237 DESPSRRQTWTRSEEEEGECPAHEEARRTMRSSAGQAWKW 276
+E RR+ + +EEE +E RR+ Q W+W
Sbjct: 837 EEQLQRRERAQQLQEEEDGLQEDQERRRSQEQRRDQKWRW 876
>gi|58331253 obscurin, cytoskeletal calmodulin and titin-interacting
RhoGEF isoform a [Homo sapiens]
Length = 6620
Score = 28.1 bits (61), Expect = 10.0
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 20/80 (25%)
Query: 212 GAFRCLAEGAGDVAFVK-----------HSTVLENTDES---------PSRRQTWTRSEE 251
G +RCLAE + V+ K + T + T+ S SR Q T S
Sbjct: 5195 GVYRCLAENSMGVSSTKAELRVDLTSTDYDTAADATESSSYFSAQGYLSSREQEGTESTT 5254
Query: 252 EEGECPAHEEARRTMRSSAG 271
+EG+ P E R ++ + G
Sbjct: 5255 DEGQLPQVVEELRDLQVAPG 5274
>gi|148833506 obscurin, cytoskeletal calmodulin and titin-interacting
RhoGEF isoform b [Homo sapiens]
Length = 7968
Score = 28.1 bits (61), Expect = 10.0
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 20/80 (25%)
Query: 212 GAFRCLAEGAGDVAFVK-----------HSTVLENTDES---------PSRRQTWTRSEE 251
G +RCLAE + V+ K + T + T+ S SR Q T S
Sbjct: 5195 GVYRCLAENSMGVSSTKAELRVDLTSTDYDTAADATESSSYFSAQGYLSSREQEGTESTT 5254
Query: 252 EEGECPAHEEARRTMRSSAG 271
+EG+ P E R ++ + G
Sbjct: 5255 DEGQLPQVVEELRDLQVAPG 5274
>gi|165905591 LIM domain and actin binding 1 isoform c [Homo
sapiens]
Length = 600
Score = 28.1 bits (61), Expect = 10.0
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 239 SPSRRQTWTRSEEEEGECPAHEEARRTMRSSAGQAWKWAPVHRP--QDESDKGEFGKRAK 296
SP R+ W+ SE+ E E A R +A + K V + Q++ KGE GKR+K
Sbjct: 450 SPPIRKGWSMSEQSE-ESVGGRVAERKQVENAKASKKNGNVGKTTWQNKESKGETGKRSK 508
>gi|165905589 LIM domain and actin binding 1 isoform a [Homo
sapiens]
Length = 760
Score = 28.1 bits (61), Expect = 10.0
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 239 SPSRRQTWTRSEEEEGECPAHEEARRTMRSSAGQAWKWAPVHRP--QDESDKGEFGKRAK 296
SP R+ W+ SE+ E E A R +A + K V + Q++ KGE GKR+K
Sbjct: 610 SPPIRKGWSMSEQSE-ESVGGRVAERKQVENAKASKKNGNVGKTTWQNKESKGETGKRSK 668
>gi|7705373 LIM domain and actin binding 1 isoform b [Homo sapiens]
Length = 759
Score = 28.1 bits (61), Expect = 10.0
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 239 SPSRRQTWTRSEEEEGECPAHEEARRTMRSSAGQAWKWAPVHRP--QDESDKGEFGKRAK 296
SP R+ W+ SE+ E E A R +A + K V + Q++ KGE GKR+K
Sbjct: 609 SPPIRKGWSMSEQSE-ESVGGRVAERKQVENAKASKKNGNVGKTTWQNKESKGETGKRSK 667
>gi|92110053 CUB and Sushi multiple domains 2 [Homo sapiens]
Length = 3487
Score = 28.1 bits (61), Expect = 10.0
Identities = 27/90 (30%), Positives = 37/90 (41%), Gaps = 27/90 (30%)
Query: 135 NRTVGWNVPVGYLVESGRLSVMGC----------DVLKAV---------------SDYFG 169
N+TV + GY++ES R+SV+ C V KA+ SD+
Sbjct: 2971 NKTVTYQCVPGYMMESHRVSVLSCTKDRTWNGTKPVCKALMCKPPPLIPNGKVVGSDFMW 3030
Query: 170 GSCVPGAGETSYSESLCRL--CRGDSSGEG 197
GS V A Y SL + C G+ S G
Sbjct: 3031 GSSVTYACLEGYQLSLPAVFTCEGNGSWTG 3060
>gi|34328899 protein tyrosine phosphatase, non-receptor type 14 [Homo
sapiens]
Length = 1187
Score = 28.1 bits (61), Expect = 10.0
Identities = 29/129 (22%), Positives = 48/129 (37%), Gaps = 24/129 (18%)
Query: 14 LRTVLGGMEVRWCATSDPEQHKCGNMSEAFREAGIQPSLLCVRGTSADHCVQLIAAQEAD 73
++ V+GG E + AT P H C + + E G+ + + ++ A+E
Sbjct: 968 IKVVVGGAEWHYIATQGPLPHTCHDFWQMVWEQGV-------------NVIAMVTAEE-- 1012
Query: 74 AITLDGGAIYEAGKEHGLKPVVGEVYDQEVGTSYYAVAVVRRSSHVTIDTLKGVKSCHTG 133
+GG K H P +G + + R S T VK +G
Sbjct: 1013 ----EGGRT----KSHRYWPKLGSKHSSATYGKFKVTTKFRTDSVCYATTGLKVKHLLSG 1064
Query: 134 INRTVGWNV 142
RTV W++
Sbjct: 1065 QERTV-WHL 1072
>gi|7662180 glycine-, glutamate-,
thienylcyclohexylpiperidine-binding protein [Homo
sapiens]
Length = 925
Score = 28.1 bits (61), Expect = 10.0
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 9/60 (15%)
Query: 17 VLGGMEVRWCATSDPEQHK-------CGNMSEAFREAGIQPSLL--CVRGTSADHCVQLI 67
+ GG A P++H CG SE+F E G+ C+ T DHC Q++
Sbjct: 731 IQGGKAAPAEALGIPDEHYLDNLCIFCGERSESFTEEGLDLHYWKHCLMLTRCDHCKQVV 790
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.132 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,658,667
Number of Sequences: 37866
Number of extensions: 591551
Number of successful extensions: 1533
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1498
Number of HSP's gapped (non-prelim): 31
length of query: 302
length of database: 18,247,518
effective HSP length: 102
effective length of query: 200
effective length of database: 14,385,186
effective search space: 2877037200
effective search space used: 2877037200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.