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Search of human proteins with 15834617
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15834617 excision repair cross-complementing rodent repair
deficiency, complementation group 2 protein isoform 1 [Homo sapiens]
(760 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|15834617 excision repair cross-complementing rodent repair de... 1514 0.0
gi|195947407 excision repair cross-complementing rodent repair d... 778 0.0
gi|91984775 regulator of telomere elongation helicase 1 isoform ... 202 9e-52
gi|7706541 regulator of telomere elongation helicase 1 isoform 1... 202 9e-52
gi|14042978 BRCA1 interacting protein C-terminal helicase 1 [Hom... 171 2e-42
gi|100913202 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 iso... 166 6e-41
gi|132566527 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 iso... 140 3e-33
gi|212549538 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 12 [Ho... 124 2e-28
gi|100913204 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 iso... 113 7e-25
gi|239755744 PREDICTED: similar to Putative ATP-dependent RNA he... 107 3e-23
gi|224458284 Rho GTPase activating protein 23 [Homo sapiens] 33 1.3
gi|63055049 phosphoglucomutase 2 [Homo sapiens] 32 1.7
gi|51702248 G protein-coupled receptor associated sorting protei... 32 2.2
gi|19923967 G protein-coupled receptor associated sorting protei... 32 2.2
gi|4759336 Fanconi anemia, complementation group G [Homo sapiens] 31 3.7
gi|110349767 calcium channel, voltage-dependent, L type, alpha 1... 31 4.9
gi|88196790 coiled-coil domain containing 88 [Homo sapiens] 31 4.9
gi|91598777 transmembrane protein 146 [Homo sapiens] 30 6.4
gi|162287219 prune homolog 2 [Homo sapiens] 30 8.3
gi|113722120 G protein-coupled receptor 98 precursor [Homo sapiens] 30 8.3
>gi|15834617 excision repair cross-complementing rodent repair
deficiency, complementation group 2 protein isoform 1
[Homo sapiens]
Length = 760
Score = 1514 bits (3919), Expect = 0.0
Identities = 760/760 (100%), Positives = 760/760 (100%)
Query: 1 MKLNVDGLLVYFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ 60
MKLNVDGLLVYFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ 60
Query: 61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPE 120
RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPE
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPE 120
Query: 121 VTPLRFGKDVDGKCHSLTASYVRAQYQHDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDL 180
VTPLRFGKDVDGKCHSLTASYVRAQYQHDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDL
Sbjct: 121 VTPLRFGKDVDGKCHSLTASYVRAQYQHDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDL 180
Query: 181 KALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 240
KALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID
Sbjct: 181 KALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 240
Query: 241 NVCIDSMSVNLTRRTLDRCQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARE 300
NVCIDSMSVNLTRRTLDRCQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARE
Sbjct: 241 NVCIDSMSVNLTRRTLDRCQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARE 300
Query: 301 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSG 360
TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSG
Sbjct: 301 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSG 360
Query: 361 LAQRVCIQRKPLRFCAERLRSLLHTLEITDLADFSPLTLLANFATLVSTYAKGFTIIIEP 420
LAQRVCIQRKPLRFCAERLRSLLHTLEITDLADFSPLTLLANFATLVSTYAKGFTIIIEP
Sbjct: 361 LAQRVCIQRKPLRFCAERLRSLLHTLEITDLADFSPLTLLANFATLVSTYAKGFTIIIEP 420
Query: 421 FDDRTPTIANPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMAT 480
FDDRTPTIANPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMAT
Sbjct: 421 FDDRTPTIANPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMAT 480
Query: 481 FTMTLARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFT 540
FTMTLARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFT
Sbjct: 481 FTMTLARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFT 540
Query: 541 SYQYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA 600
SYQYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA
Sbjct: 541 SYQYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA 600
Query: 601 RGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHA 660
RGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHA
Sbjct: 601 RGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHA 660
Query: 661 AQCVGRAIRGKTDYGLMVFADKRFARGDKRGKLPRWIQEHLTDANLNLTVDEGVQVAKYF 720
AQCVGRAIRGKTDYGLMVFADKRFARGDKRGKLPRWIQEHLTDANLNLTVDEGVQVAKYF
Sbjct: 661 AQCVGRAIRGKTDYGLMVFADKRFARGDKRGKLPRWIQEHLTDANLNLTVDEGVQVAKYF 720
Query: 721 LRQMAQPFHREDQLGLSLLSLEQLESEETLKRIEQIAQQL 760
LRQMAQPFHREDQLGLSLLSLEQLESEETLKRIEQIAQQL
Sbjct: 721 LRQMAQPFHREDQLGLSLLSLEQLESEETLKRIEQIAQQL 760
>gi|195947407 excision repair cross-complementing rodent repair
deficiency, complementation group 2 protein isoform 2
[Homo sapiens]
Length = 405
Score = 778 bits (2010), Expect = 0.0
Identities = 389/389 (100%), Positives = 389/389 (100%)
Query: 25 MRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRAYPLEVTKLIYCSRTVPEIEKVI 84
MRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRAYPLEVTKLIYCSRTVPEIEKVI
Sbjct: 1 MRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRAYPLEVTKLIYCSRTVPEIEKVI 60
Query: 85 EELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRA 144
EELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRA
Sbjct: 61 EELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRA 120
Query: 145 QYQHDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDLKALGRRQGWCPYFLARYSILHANV 204
QYQHDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDLKALGRRQGWCPYFLARYSILHANV
Sbjct: 121 QYQHDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDLKALGRRQGWCPYFLARYSILHANV 180
Query: 205 VVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQGNLE 264
VVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQGNLE
Sbjct: 181 VVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQGNLE 240
Query: 265 TLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPDEVLQEAVPGSIR 324
TLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPDEVLQEAVPGSIR
Sbjct: 241 TLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPDEVLQEAVPGSIR 300
Query: 325 TAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSGLAQRVCIQRKPLRFCAERLRSLLH 384
TAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSGLAQRVCIQRKPLRFCAERLRSLLH
Sbjct: 301 TAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSGLAQRVCIQRKPLRFCAERLRSLLH 360
Query: 385 TLEITDLADFSPLTLLANFATLVSTYAKG 413
TLEITDLADFSPLTLLANFATLVSTYAKG
Sbjct: 361 TLEITDLADFSPLTLLANFATLVSTYAKG 389
>gi|91984775 regulator of telomere elongation helicase 1 isoform 2
[Homo sapiens]
Length = 1300
Score = 202 bits (514), Expect = 9e-52
Identities = 197/775 (25%), Positives = 325/775 (41%), Gaps = 120/775 (15%)
Query: 2 KLNVDGLLVYFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQR 61
K+ ++G+ V FP+ Y Q YM ++ L K +G+LE P+GTGKT+ LL +A++
Sbjct: 3 KIVLNGVTVDFPFQP-YKCQQEYMTKVLECLQQKVNGILESPTGTGKTLCLLCTTLAWRE 61
Query: 62 ---------------------------------------AYPLEVTKLIYCSRTVPEIEK 82
A ++ K+IY SRT ++ +
Sbjct: 62 HLRDGISARKIAERAQGELFPDRALSSWGNAAAAAGDPIACYTDIPKIIYASRTHSQLTQ 121
Query: 83 VIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYV 142
VI ELR K+ LG SR+ LCIHPEV C AS
Sbjct: 122 VINELRNT------SYRPKVCVLG----SREQLCIHPEVKKQESNHLQIHLCRKKVASR- 170
Query: 143 RAQYQHDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDLKALGRRQGWCPYFLARYSILHA 202
C FY + E L + I +++DL G + CPY+L+R A
Sbjct: 171 -----------SCHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQA 219
Query: 203 NVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQGN 262
+++ Y+YLLD K + +L + VV+FDEAHN++ +C +S S +LT L
Sbjct: 220 DIIFMPYNYLLDAKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDLASGLDV 278
Query: 263 LETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPDEVLQEAV--P 320
++ + + + + E GL + E A L +L E +AV P
Sbjct: 279 IDQVLEEQTKAAQQGEPHPEFSADSPSPGL---NMELEDIAKLKMILLRLEGAIDAVELP 335
Query: 321 GSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSGLAQRVCIQRKPLRFCAERLR 380
G ++ L + + + + +S + LA R + ++L
Sbjct: 336 GDDSGVTKPGSYIFELFAEAQITFQTKGCILDSLDQIIQHLAGRAGVFTNTAGL--QKLA 393
Query: 381 SLLHTLEITDLADFSP-----LTLLANFATLVSTYAKGFTIIIEPFDDRTPTIANP---I 432
++ + D ++ SP L L ++ + A G + D + T A +
Sbjct: 394 DIIQIVFSVDPSEGSPGSPAGLGALQSYKVHIHPDA-GHRRTAQRSDAWSTTAARKRGKV 452
Query: 433 LHFSCMDASLAIKPVFER-FQSVIITSGTLSPLDIY--------------PKILDFHPVT 477
L + C ++ + + +S+I+TSGTL+P+ + P I+D H +
Sbjct: 453 LSYWCFSPGHSMHELVRQGVRSLILTSGTLAPVSSFALEMQIPFPVCLENPHIIDKHQIW 512
Query: 478 MATFTMTLARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVA 537
+ ++ RG D +SS F+ R + + G L ++ VVP G++
Sbjct: 513 VG--------------VVPRGPDGAQLSSAFDRRFSEECLSSLGKALGNIARVVPYGLLI 558
Query: 538 FFTSYQYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKY--QEACENGRGAI 595
FF SY ME ++ W + + ++ K LF+E + S + Y + A GA
Sbjct: 559 FFPSYPVMEKSLEFWRARDLARKMEALKPLFVEPRSKGSFSETISAYYARVAAPGSTGAT 618
Query: 596 LLSVARGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYLRD---------QFQI 646
L+V RGK SEG+DF GR VI+ G+PY + ++++L + QF +
Sbjct: 619 FLAVCRGKASEGLDFSDTNGRGVIVTGLPYPPRMDPRVVLKMQFLDEMKGQGGAGGQF-L 677
Query: 647 RENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFARGDKRGKLPRWIQEHL 701
++ A R Q +GR IR + DYG + D RFA D R +LP W++ H+
Sbjct: 678 SGQEWYRQQASRAVNQAIGRVIRHRQDYGAVFLCDHRFAFADARAQLPSWVRPHV 732
>gi|7706541 regulator of telomere elongation helicase 1 isoform 1
[Homo sapiens]
Length = 1219
Score = 202 bits (514), Expect = 9e-52
Identities = 197/775 (25%), Positives = 325/775 (41%), Gaps = 120/775 (15%)
Query: 2 KLNVDGLLVYFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQR 61
K+ ++G+ V FP+ Y Q YM ++ L K +G+LE P+GTGKT+ LL +A++
Sbjct: 3 KIVLNGVTVDFPFQP-YKCQQEYMTKVLECLQQKVNGILESPTGTGKTLCLLCTTLAWRE 61
Query: 62 ---------------------------------------AYPLEVTKLIYCSRTVPEIEK 82
A ++ K+IY SRT ++ +
Sbjct: 62 HLRDGISARKIAERAQGELFPDRALSSWGNAAAAAGDPIACYTDIPKIIYASRTHSQLTQ 121
Query: 83 VIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYV 142
VI ELR K+ LG SR+ LCIHPEV C AS
Sbjct: 122 VINELRNT------SYRPKVCVLG----SREQLCIHPEVKKQESNHLQIHLCRKKVASR- 170
Query: 143 RAQYQHDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDLKALGRRQGWCPYFLARYSILHA 202
C FY + E L + I +++DL G + CPY+L+R A
Sbjct: 171 -----------SCHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQA 219
Query: 203 NVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQGN 262
+++ Y+YLLD K + +L + VV+FDEAHN++ +C +S S +LT L
Sbjct: 220 DIIFMPYNYLLDAKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDLASGLDV 278
Query: 263 LETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPDEVLQEAV--P 320
++ + + + + E GL + E A L +L E +AV P
Sbjct: 279 IDQVLEEQTKAAQQGEPHPEFSADSPSPGL---NMELEDIAKLKMILLRLEGAIDAVELP 335
Query: 321 GSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSGLAQRVCIQRKPLRFCAERLR 380
G ++ L + + + + +S + LA R + ++L
Sbjct: 336 GDDSGVTKPGSYIFELFAEAQITFQTKGCILDSLDQIIQHLAGRAGVFTNTAGL--QKLA 393
Query: 381 SLLHTLEITDLADFSP-----LTLLANFATLVSTYAKGFTIIIEPFDDRTPTIANP---I 432
++ + D ++ SP L L ++ + A G + D + T A +
Sbjct: 394 DIIQIVFSVDPSEGSPGSPAGLGALQSYKVHIHPDA-GHRRTAQRSDAWSTTAARKRGKV 452
Query: 433 LHFSCMDASLAIKPVFER-FQSVIITSGTLSPLDIY--------------PKILDFHPVT 477
L + C ++ + + +S+I+TSGTL+P+ + P I+D H +
Sbjct: 453 LSYWCFSPGHSMHELVRQGVRSLILTSGTLAPVSSFALEMQIPFPVCLENPHIIDKHQIW 512
Query: 478 MATFTMTLARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVA 537
+ ++ RG D +SS F+ R + + G L ++ VVP G++
Sbjct: 513 VG--------------VVPRGPDGAQLSSAFDRRFSEECLSSLGKALGNIARVVPYGLLI 558
Query: 538 FFTSYQYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKY--QEACENGRGAI 595
FF SY ME ++ W + + ++ K LF+E + S + Y + A GA
Sbjct: 559 FFPSYPVMEKSLEFWRARDLARKMEALKPLFVEPRSKGSFSETISAYYARVAAPGSTGAT 618
Query: 596 LLSVARGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYLRD---------QFQI 646
L+V RGK SEG+DF GR VI+ G+PY + ++++L + QF +
Sbjct: 619 FLAVCRGKASEGLDFSDTNGRGVIVTGLPYPPRMDPRVVLKMQFLDEMKGQGGAGGQF-L 677
Query: 647 RENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFARGDKRGKLPRWIQEHL 701
++ A R Q +GR IR + DYG + D RFA D R +LP W++ H+
Sbjct: 678 SGQEWYRQQASRAVNQAIGRVIRHRQDYGAVFLCDHRFAFADARAQLPSWVRPHV 732
>gi|14042978 BRCA1 interacting protein C-terminal helicase 1 [Homo
sapiens]
Length = 1249
Score = 171 bits (433), Expect = 2e-42
Identities = 170/671 (25%), Positives = 292/671 (43%), Gaps = 79/671 (11%)
Query: 66 EVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLR 125
++ K+ + +RT +I ++ ELR+ G + L SSR + C+HPEV
Sbjct: 242 KIPKIYFGTRTHKQIAQITRELRRTA-----YSGVPMTIL----SSRDHTCVHPEVVG-N 291
Query: 126 FGKDVDGKCHSLTASYVRAQYQHDTSLPHCRFYEEFDAHGREVPLP-----AGIYNLDDL 180
F + + KC L + C FY + L +++++L
Sbjct: 292 FNR--NEKCMELL---------DGKNGKSCYFYHGVHKISDQHTLQTFQGMCKAWDIEEL 340
Query: 181 KALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 240
+LG++ CPY+ AR I A+++ Y+YLLD +I + + L ++ VV+ DEAHNI+
Sbjct: 341 VSLGKKLKACPYYTARELIQDADIIFCPYNYLLDAQIRESMDLNL-KEQVVILDEAHNIE 399
Query: 241 NVCIDSMSVNLTRRTLDRCQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLR-EASAAR 299
+ +S S ++T L + L+++ I++ D + LR L+ L A
Sbjct: 400 DCARESASYSVTEVQLRFARDELDSMVNN--NIRKKDHEPLRAVCCSLINWLEANAEYLV 457
Query: 300 ETDAHLANPVLP-DEVLQEAVPGSIRTAE------HFLGFLRRLLE----YVKWRLRVQH 348
E D A + +E+L I TA HF L++ + Y K R
Sbjct: 458 ERDYESACKIWSGNEMLLTLHKMGITTATFPILQGHFSAVLQKEEKISPIYGKEEAREVP 517
Query: 349 VVQESPPAFLSGLAQRV-CIQRKPLRFCAERLRSLLHTLEITDLADFSPLTLLANFATLV 407
V+ S L GL + + R+ RF + ++ T T+ D S
Sbjct: 518 VISASTQIMLKGLFMVLDYLFRQNSRFADDYKIAIQQTYSWTNQIDISD----------- 566
Query: 408 STYAKGFTIIIEPFDDRTPTIANPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIY 467
G ++ + A +L+F C++ ++A + + Q++++TSGTLSP+ +
Sbjct: 567 ---KNGLLVLPKNKKRSRQKTAVHVLNFWCLNPAVAFSDINGKVQTIVLTSGTLSPMKSF 623
Query: 468 PKILDFHPVTMATFTMTLARVCLCPM------IIGRGNDQVAISSKFETREDIAVIRNYG 521
L TFT+ L + IG G + + F+ E G
Sbjct: 624 SSELG------VTFTIQLEANHIIKNSQVWVGTIGSGPKGRNLCATFQNTETFEFQDEVG 677
Query: 522 NLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQRNKLLFIETQDGAETSV-- 579
LLL + V GI+ F SY+ +E W G+ N++ K + +E Q G +T+
Sbjct: 678 ALLLSVCQTVSQGILCFLPSYKLLEKLKERWLSTGLWHNLELVKTVIVEPQGGEKTNFDE 737
Query: 580 ALEKYQEACE---NGRGAILLSVARGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKAR 636
L+ Y +A + GA+L++V RGKVSEG+DF RAVI G+P+ + ++ +
Sbjct: 738 LLQVYYDAIKYKGEKDGALLVAVCRGKVSEGLDFSDDNARAVITIGIPFPNVKDLQVELK 797
Query: 637 LEYLRDQFQIR----ENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFARGDKR-- 690
+Y ++R + A R Q +GR IR + D+G ++ D RF R
Sbjct: 798 RQYNDHHSKLRGLLPGRQWYEIQAYRALNQALGRCIRHRNDWGALILVDDRFRNNPSRYI 857
Query: 691 GKLPRWIQEHL 701
L +W+++ +
Sbjct: 858 SGLSKWVRQQI 868
Score = 51.6 bits (122), Expect = 3e-06
Identities = 23/58 (39%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Query: 5 VDGLLVYFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRA 62
+ G+ +YFPY YP Q + M + R L++K H +LE P+G+GK+++LL +A+Q++
Sbjct: 10 IGGVKIYFPYK-AYPSQLAMMNSILRGLNSKQHCLLESPTGSGKSLALLCSALAWQQS 66
>gi|100913202 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11
isoform 1 [Homo sapiens]
Length = 906
Score = 166 bits (421), Expect = 6e-41
Identities = 174/718 (24%), Positives = 306/718 (42%), Gaps = 95/718 (13%)
Query: 67 VTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRF 126
+TK+ YCSRT ++ + + E++K G+ + + +L SR+NLC++ +V L
Sbjct: 226 ITKIYYCSRTHSQLAQFVHEVKK------SPFGKDVRLV--SLGSRQNLCVNEDVKSLGS 277
Query: 127 GKDVDGKCHSLTASYVRAQYQHDTSLPH---------CRFYEEFDAHGREVPLPAGIYNL 177
+ ++ +C + S + + P C FY A + ++
Sbjct: 278 VQLINDRCVDMQRSRHEKKKGAEEEKPKRRRQEKQAACPFYNHEQMGLLRDEALAEVKDM 337
Query: 178 DDLKALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAH 237
+ L ALG+ CPY+ +R +I A +VV Y LL L + VV+ DEAH
Sbjct: 338 EQLLALGKEARACPYYGSRLAIPAAQLVVLPYQMLLHAATRQAAGIRL-QDQVVIIDEAH 396
Query: 238 NIDNVCIDSMSVNLTRRTLDRCQGN---LETLQKTVLRIKETDEQRLR------DEYRRL 288
N+ + SV ++ L CQ + L+ +++ R+K + L+ +++ +
Sbjct: 397 NLIDTITGMHSVEVSGSQL--CQAHSQLLQYVERYGKRLKAKNLMYLKQILYLLEKFVAV 454
Query: 289 VEGLREASAARETDAHLANPV--LPDEVLQEAVPG-SIRTAEHFL--GFLRRLLEYVKWR 343
+ G + + ++ + + + D + Q + ++ + + + R L R
Sbjct: 455 LGGNIKQNPNTQSLSQTGTELKTINDFLFQSQIDNINLFKVQRYCEKSMISRKLFGFTER 514
Query: 344 LRVQHVVQESPPA-----FLSGLAQRVCIQRKPLRFCAERLRSLLHTLEITDLADFSPLT 398
+E P FL L R E L + + + L SPL
Sbjct: 515 YGAVFSSREQPKLAGFQQFLQSLQPRT----------TEALAAPADESQASTLRPASPLM 564
Query: 399 LLANFATLVSTYAKGFTIIIEPFDDRTPTIANPILHFSCMDASLAIKPVFERFQSVIITS 458
+ F ++T + +I+ R +++ L F ++ ++ V + ++V+I
Sbjct: 565 HIQGFLAALTTANQDGRVILS----RQGSLSQSTLKFLLLNPAVHFAQVVKECRAVVIAG 620
Query: 459 GTLSPLDIYPKILDFHPVTMATFTMTLARVC------------LCPMIIGRGNDQVAISS 506
GT+ P+ DF +A + RV + P++I G +
Sbjct: 621 GTMQPVS------DFRQQLLACAGVEAERVVEFSCGHVIPPDNILPLVICSGISNQPLEF 674
Query: 507 KFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQRNKL 566
F+ RE ++ G +L + VVP G+V FF SY+Y+ A W + G+L + K
Sbjct: 675 TFQKRELPQMMDEVGRILCNLCGVVPGGVVCFFPSYEYLRQVHAHWEKGGLLGRLAARKK 734
Query: 567 LFIETQDGAETSVALEKYQ---EACENGR----GAILLSVARGKVSEGIDFVHHYGRAVI 619
+F E + + L Y +AC R GA+LLSV GK+SEGI+F + GR V+
Sbjct: 735 IFQEPKSAHQVEQVLLAYSRCIQACGQERGQVTGALLLSVVGGKMSEGINFSDNLGRCVV 794
Query: 620 MFGVPYVYTQSRILKARLEYL-----RDQFQIRENDFLTFD-AMRHAAQCVGRAIRGKTD 673
M G+P+ +S L+ ++ YL R Q L + M+ Q +GRAIR + D
Sbjct: 795 MVGMPFPNIRSAELQEKMAYLDQTLPRAPGQAPPGKALVENLCMKAVNQSIGRAIRHQKD 854
Query: 674 YGLMVFADKRFARGDKRGKLPRWIQEHLTDANLNLTVDEGVQVAKYFLRQMAQPFHRE 731
+ +V D+R+AR KLP WI+ A + + G +A Q FHRE
Sbjct: 855 FASVVLLDQRYARPPVLAKLPAWIR-----ARVEVKATFGPAIA------AVQKFHRE 901
Score = 41.6 bits (96), Expect = 0.003
Identities = 20/55 (36%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 10 VYFPYDYI-YPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRAY 63
++FP+ + Y Q +M EL R L+A G+ E P+GTGK++SL+ +++ R +
Sbjct: 11 IHFPFPFTPYSIQEDFMAELYRVLEAGKIGIFESPTGTGKSLSLICGALSWLRDF 65
>gi|132566527 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11
isoform 3 [Homo sapiens]
Length = 970
Score = 140 bits (354), Expect = 3e-33
Identities = 145/621 (23%), Positives = 265/621 (42%), Gaps = 78/621 (12%)
Query: 67 VTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRF 126
+TK+ YCSRT ++ + + E++K G+ + + +L SR+NLC++ +V L
Sbjct: 226 ITKIYYCSRTHSQLAQFVHEVKK------SPFGKDVRLV--SLGSRQNLCVNEDVKSLGS 277
Query: 127 GKDVDGKCHSLTASYVRAQYQHDTSLPH---------CRFYEEFDAHGREVPLPAGIYNL 177
+ ++ +C + S + + P C FY A + ++
Sbjct: 278 VQLINDRCVDMQRSRHEKKKGAEEEKPKRRRQEKQAACPFYNHEQMGLLRDEALAEVKDM 337
Query: 178 DDLKALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAH 237
+ L ALG+ CPY+ +R +I A +VV Y LL L + VV+ DEAH
Sbjct: 338 EQLLALGKEARACPYYGSRLAIPAAQLVVLPYQMLLHAATRQAAGIRL-QDQVVIIDEAH 396
Query: 238 NIDNVCIDSMSVNLTRRTLDRCQGN---LETLQKTVLRIKETDEQRLR------DEYRRL 288
N+ + SV ++ L CQ + L+ +++ R+K + L+ +++ +
Sbjct: 397 NLIDTITGMHSVEVSGSQL--CQAHSQLLQYVERYGKRLKAKNLMYLKQILYLLEKFVAV 454
Query: 289 VEGLREASAARETDAHLANPV--LPDEVLQEAVPG-SIRTAEHFL--GFLRRLLEYVKWR 343
+ G + + ++ + + + D + Q + ++ + + + R L R
Sbjct: 455 LGGNIKQNPNTQSLSQTGTELKTINDFLFQSQIDNINLFKVQRYCEKSMISRKLFGFTER 514
Query: 344 LRVQHVVQESPPA-----FLSGLAQRVCIQRKPLRFCAERLRSLLHTLEITDLADFSPLT 398
+E P FL L R E L + + + L SPL
Sbjct: 515 YGAVFSSREQPKLAGFQQFLQSLQPRT----------TEALAAPADESQASTLRPASPLM 564
Query: 399 LLANFATLVSTYAKGFTIIIEPFDDRTPTIANPILHFSCMDASLAIKPVFERFQSVIITS 458
+ F ++T + +I+ R +++ L F ++ ++ V + ++V+I
Sbjct: 565 HIQGFLAALTTANQDGRVILS----RQGSLSQSTLKFLLLNPAVHFAQVVKECRAVVIAG 620
Query: 459 GTLSPLDIYPKILDFHPVTMATFTMTLARVC------------LCPMIIGRGNDQVAISS 506
GT+ P+ DF +A + RV + P++I G +
Sbjct: 621 GTMQPVS------DFRQQLLACAGVEAERVVEFSCGHVIPPDNILPLVICSGISNQPLEF 674
Query: 507 KFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQRNKL 566
F+ RE ++ G +L + VVP G+V FF SY+Y+ A W + G+L + K
Sbjct: 675 TFQKRELPQMMDEVGRILCNLCGVVPGGVVCFFPSYEYLRQVHAHWEKGGLLGRLAARKK 734
Query: 567 LFIETQDGAETSVALEKYQ---EACENGR----GAILLSVARGKVSEGIDFVHHYGRAVI 619
+F E + + L Y +AC R GA+LLSV GK+SEGI+F + GR V+
Sbjct: 735 IFQEPKSAHQVEQVLLAYSRCIQACGQERGQVTGALLLSVVGGKMSEGINFSDNLGRCVV 794
Query: 620 MFGVPYVYTQSRILKARLEYL 640
M G+P+ +S L+ ++ YL
Sbjct: 795 MVGMPFPNIRSAELQEKMAYL 815
Score = 41.6 bits (96), Expect = 0.003
Identities = 20/55 (36%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 10 VYFPYDYI-YPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRAY 63
++FP+ + Y Q +M EL R L+A G+ E P+GTGK++SL+ +++ R +
Sbjct: 11 IHFPFPFTPYSIQEDFMAELYRVLEAGKIGIFESPTGTGKSLSLICGALSWLRDF 65
>gi|212549538 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 12 [Homo
sapiens]
Length = 906
Score = 124 bits (312), Expect = 2e-28
Identities = 99/362 (27%), Positives = 164/362 (45%), Gaps = 46/362 (12%)
Query: 395 SPLTLLANFATLVSTYAKGFTIIIEPFDDRTPTIANPILHFSCMDASLAIKPVFERFQSV 454
SPL + F ++T + +I+ R +++ L F ++ ++ V + ++V
Sbjct: 561 SPLMHIEGFLAALTTANQDGRVILS----RQGSLSQSTLKFLLLNPAVHFAQVVKECRAV 616
Query: 455 IITSGTLSPLDIYPKILDFHPVTMATFTMTLARVC------------LCPMIIGRGNDQV 502
+I GT+ P+ +F +A + RV + P++I G
Sbjct: 617 VIAGGTMQPVS------NFRQQLLACAGVEAERVVEFSCGHVIPPDNILPLVICSGVSNQ 670
Query: 503 AISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQ 562
+ F+ R+ ++ G +L + VV G+V FF SY+Y+ A W + G+L +
Sbjct: 671 PLEFTFQKRDLPQMMDEVGRILCNLCGVVSGGVVCFFPSYEYLRQVHAHWEKGGLLGRLA 730
Query: 563 RNKLLFIETQDGAETSVALEKYQ---EACENGR----GAILLSVARGKVSEGIDFVHHYG 615
K +F E + + L Y +AC R GA+LLSV GK+SEGI+F + G
Sbjct: 731 ARKKIFQEPKSAHQVEQVLLAYSRCLQACGQERGPVTGALLLSVVGGKMSEGINFSDNLG 790
Query: 616 RAVIMFGVPYVYTQSRILKARLEYL-----RDQFQIRENDFLTFD-AMRHAAQCVGRAIR 669
R V+M G+P+ +S L+ ++ YL R Q L + M+ Q +GRAIR
Sbjct: 791 RCVVMVGMPFPNIRSAELQEKMAYLDQTLPRAPGQAHPGKALVENLCMKAVNQSIGRAIR 850
Query: 670 GKTDYGLMVFADKRFARGDKRGKLPRWIQEHLTDANLNLTVDEGVQVAKYFLRQMAQPFH 729
+ D+ +V D+R+AR KLP WI+ A + + G +A Q FH
Sbjct: 851 HQKDFASIVLLDQRYARPPVLAKLPAWIR-----ARVEVKATFGPAIA------AVQKFH 899
Query: 730 RE 731
RE
Sbjct: 900 RE 901
Score = 66.2 bits (160), Expect = 1e-10
Identities = 54/210 (25%), Positives = 95/210 (45%), Gaps = 20/210 (9%)
Query: 67 VTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRF 126
+TK+ +CSRT ++ + + E++K G+ + + +L SR+NLC++ +V L
Sbjct: 226 ITKIYHCSRTHSQLAQFVHEVKK------SPFGKDVRLV--SLGSRQNLCVNEDVRSLGS 277
Query: 127 GKDVDGKCHSLTASYVRAQYQHDTSLPH---------CRFYEEFDAHGREVPLPAGIYNL 177
+ ++ +C + S + + P C FY A + ++
Sbjct: 278 VQLINNRCVDMQRSRHEKKKGAEEEKPKRRRQEKQAACPFYNHEQMGLLRDEALAEVKDM 337
Query: 178 DDLKALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAH 237
+ L ALG+ CPY+ +R +I A +VV Y LL L + VV+ DEAH
Sbjct: 338 EQLLALGKEARACPYYGSRLAIPAAQLVVLPYQMLLHAATRQAAGIRL-QDQVVIIDEAH 396
Query: 238 NIDNVCIDSMSVNLTRRTLDRCQGNLETLQ 267
N+ + SV ++ L CQ + + LQ
Sbjct: 397 NLIDTTTSMHSVEVSGSQL--CQAHSQLLQ 424
Score = 41.6 bits (96), Expect = 0.003
Identities = 20/55 (36%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 10 VYFPYDYI-YPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRAY 63
++FP+ + Y Q +M EL R L+A G+ E P+GTGK++SL+ +++ R +
Sbjct: 11 IHFPFPFTPYSIQEDFMAELYRVLEAGKIGIFESPTGTGKSLSLICGALSWLRDF 65
>gi|100913204 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11
isoform 2 [Homo sapiens]
Length = 856
Score = 113 bits (282), Expect = 7e-25
Identities = 161/715 (22%), Positives = 284/715 (39%), Gaps = 139/715 (19%)
Query: 67 VTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRF 126
+TK+ YCSRT ++ + + E++K G+ + + +L SR+NLC++ +V L
Sbjct: 226 ITKIYYCSRTHSQLAQFVHEVKK------SPFGKDVRLV--SLGSRQNLCVNEDVKSLGS 277
Query: 127 GKDVDGKCHSLTASYVRAQYQHDTSLPH---------CRFYEEFDAHGREVPLPAGIYNL 177
+ ++ +C + S + + P C FY A + ++
Sbjct: 278 VQLINDRCVDMQRSRHEKKKGAEEEKPKRRRQEKQAACPFYNHEQMGLLRDEALAEVKDM 337
Query: 178 DDLKALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAH 237
+ L ALG+ CPY+ +R +I A +VV Y LL L + VV+ DEAH
Sbjct: 338 EQLLALGKEARACPYYGSRLAIPAAQLVVLPYQMLLHAATRQAAGIRL-QDQVVIIDEAH 396
Query: 238 NIDNVCIDSMSVNLTRRTLDRCQGN---LETLQKTVLRIKETDEQRLR------DEYRRL 288
N+ + SV ++ L CQ + L+ +++ R+K + L+ +++ +
Sbjct: 397 NLIDTITGMHSVEVSGSQL--CQAHSQLLQYVERYGKRLKAKNLMYLKQILYLLEKFVAV 454
Query: 289 VEGLREASAARETDAHLANPV--LPDEVLQEAVPG-SIRTAEHFL--GFLRRLLEYVKWR 343
+ G + + ++ + + + D + Q + ++ + + + R L R
Sbjct: 455 LGGNIKQNPNTQSLSQTGTELKTINDFLFQSQIDNINLFKVQRYCEKSMISRKLFGFTER 514
Query: 344 LRVQHVVQESPPA-----FLSGLAQRVCIQRKPLRFCAERLRSLLHTLEITDLADFSPLT 398
+E P FL L R E L + + + L SPL
Sbjct: 515 YGAVFSSREQPKLAGFQQFLQSLQPRT----------TEALAAPADESQASTLRPASPLM 564
Query: 399 LLANFATLVSTYAKGFTIIIEPFDDRTPTIANPILHFSCMDASLAIKPVFERFQSVIITS 458
+ F ++T + +I+ R +++ L F ++ ++ V + ++V+I
Sbjct: 565 HIQGFLAALTTANQDGRVILS----RQGSLSQSTLKFLLLNPAVHFAQVVKECRAVVIAG 620
Query: 459 GTLSPLDIYPKILDFHPVTMATFTMTLARVC------------LCPMIIGRGNDQVAISS 506
GT+ P+ DF +A + RV + P++I G +
Sbjct: 621 GTMQPVS------DFRQQLLACAGVEAERVVEFSCGHVIPPDNILPLVICSGISNQPLEF 674
Query: 507 KFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQRNKL 566
F+ RE +P I + E A EQ +L
Sbjct: 675 TFQKRE------------------LPQMI--------FQEPKSAHQVEQVLL-------- 700
Query: 567 LFIETQDGAETSVALEKYQEACENGRG----AILLSVARGKVSEGIDFVHHYGRAVIMFG 622
A + +AC RG A+LLSV GK+SEGI+F + GR V+M G
Sbjct: 701 -------------AYSRCIQACGQERGQVTGALLLSVVGGKMSEGINFSDNLGRCVVMVG 747
Query: 623 VPYVYTQSRILKARLEYL-----RDQFQIRENDFLTFD-AMRHAAQCVGRAIRGKTDYGL 676
+P+ +S L+ ++ YL R Q L + M+ Q +GRAIR + D+
Sbjct: 748 MPFPNIRSAELQEKMAYLDQTLPRAPGQAPPGKALVENLCMKAVNQSIGRAIRHQKDFAS 807
Query: 677 MVFADKRFARGDKRGKLPRWIQEHLTDANLNLTVDEGVQVAKYFLRQMAQPFHRE 731
+V D+R+AR KLP WI+ A + + G +A Q FHRE
Sbjct: 808 VVLLDQRYARPPVLAKLPAWIR-----ARVEVKATFGPAIA------AVQKFHRE 851
Score = 41.6 bits (96), Expect = 0.003
Identities = 20/55 (36%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 10 VYFPYDYI-YPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRAY 63
++FP+ + Y Q +M EL R L+A G+ E P+GTGK++SL+ +++ R +
Sbjct: 11 IHFPFPFTPYSIQEDFMAELYRVLEAGKIGIFESPTGTGKSLSLICGALSWLRDF 65
>gi|239755744 PREDICTED: similar to Putative ATP-dependent RNA
helicase DDX11-like protein [Homo sapiens]
Length = 223
Score = 107 bits (268), Expect = 3e-23
Identities = 75/224 (33%), Positives = 110/224 (49%), Gaps = 24/224 (10%)
Query: 521 GNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVA 580
G +L + VV G+V FF SY+Y+ A W + G+L + K +F E + +
Sbjct: 6 GRILCNLCVVVSGGVVCFFPSYEYLRQVHAHWEKGGLLGRLAARKKIFQEPKSAHQVEQV 65
Query: 581 LEKYQ---EACENGRG----AILLSVARGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRIL 633
L Y +AC RG A+LLSV GK+SEGI+F + GR V+M G+P+ +S L
Sbjct: 66 LLAYSRCIQACGQERGQVTEALLLSVVGGKMSEGINFSDNLGRCVVMVGMPFPNIRSAEL 125
Query: 634 KARLEYL-----RDQFQIRENDFLTFD-AMRHAAQCVGRAIRGKTDYGLMVFADKRFARG 687
+ ++ YL R Q L + M+ Q +GRAIR + D+ +V D+R+AR
Sbjct: 126 QEKMAYLDQTLPRAPGQAPPGKALVENLCMKAVNQSIGRAIRHQKDFASIVLLDQRYARP 185
Query: 688 DKRGKLPRWIQEHLTDANLNLTVDEGVQVAKYFLRQMAQPFHRE 731
KLP WI+ A + + G +A Q FHRE
Sbjct: 186 PVLAKLPAWIR-----ARVEVKATFGPAIA------AVQKFHRE 218
>gi|224458284 Rho GTPase activating protein 23 [Homo sapiens]
Length = 1397
Score = 32.7 bits (73), Expect = 1.3
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 162 DAHGREVPLPAGIYNLDDLKALGRRQGWCPYFLARYSILHA 202
D G + P P+G+ LDDL +G R + P F R +LHA
Sbjct: 302 DLPGPQAPPPSGLQGLDDLGYIGYR-SYSPSFQRRTGLLHA 341
>gi|63055049 phosphoglucomutase 2 [Homo sapiens]
Length = 612
Score = 32.3 bits (72), Expect = 1.7
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Query: 160 EFDAHGREVPLPAGIYNLDDLKALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIAD 219
EF G + GI ++DL + QG+C Y ++S L +V S+ P
Sbjct: 56 EFGTAGLRAAMGPGISRMNDLTIIQTTQGFCRYLEKQFSDLKQKGIVISFDARAHPSSGG 115
Query: 220 LVSKELARKAVVVF 233
S+ AR A F
Sbjct: 116 -SSRRFARLAATTF 128
>gi|51702248 G protein-coupled receptor associated sorting protein 2
[Homo sapiens]
Length = 838
Score = 32.0 bits (71), Expect = 2.2
Identities = 37/167 (22%), Positives = 73/167 (43%), Gaps = 37/167 (22%)
Query: 330 LGFLRRLLEYVKWRLR---VQHVVQESPP-AFLSGLAQRVCIQRKPLRFCAERLRSLLHT 385
+ + LL Y R+R +++++ +PP L+ + +C + C E L + +
Sbjct: 640 VSLIETLLNYPSSRVRTSFLENMIHMAPPYPNLNMIETFIC------QVCEETLAHSVDS 693
Query: 386 LE-ITDLADFSPLTLLANFATLVSTYAKGFTIIIEPFDDRT--------------PTIAN 430
LE +T + LT+ ++ TL++ Y GF ++ + RT P +A
Sbjct: 694 LEQLTGIRMLRHLTMTIDYHTLIANYMSGFLSLLTTANARTKFHVLKMLLNLSENPAVAK 753
Query: 431 PILH----------FSCMDASLAIKPVFERFQSV--IITSGTLSPLD 465
+ F+ + + I+ V + FQ++ II SG +S +D
Sbjct: 754 KLFSAKALSIFVGLFNIEETNDNIQIVIKMFQNISNIIKSGKMSLID 800
>gi|19923967 G protein-coupled receptor associated sorting protein 2
[Homo sapiens]
Length = 838
Score = 32.0 bits (71), Expect = 2.2
Identities = 37/167 (22%), Positives = 73/167 (43%), Gaps = 37/167 (22%)
Query: 330 LGFLRRLLEYVKWRLR---VQHVVQESPP-AFLSGLAQRVCIQRKPLRFCAERLRSLLHT 385
+ + LL Y R+R +++++ +PP L+ + +C + C E L + +
Sbjct: 640 VSLIETLLNYPSSRVRTSFLENMIHMAPPYPNLNMIETFIC------QVCEETLAHSVDS 693
Query: 386 LE-ITDLADFSPLTLLANFATLVSTYAKGFTIIIEPFDDRT--------------PTIAN 430
LE +T + LT+ ++ TL++ Y GF ++ + RT P +A
Sbjct: 694 LEQLTGIRMLRHLTMTIDYHTLIANYMSGFLSLLTTANARTKFHVLKMLLNLSENPAVAK 753
Query: 431 PILH----------FSCMDASLAIKPVFERFQSV--IITSGTLSPLD 465
+ F+ + + I+ V + FQ++ II SG +S +D
Sbjct: 754 KLFSAKALSIFVGLFNIEETNDNIQIVIKMFQNISNIIKSGKMSLID 800
>gi|4759336 Fanconi anemia, complementation group G [Homo sapiens]
Length = 622
Score = 31.2 bits (69), Expect = 3.7
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 342 WRLRVQHVVQESPPAFLSGLAQRVCIQRKPLRFCAERLRSLLHTLE-ITDLADFSPL--T 398
WR + +V+++ A SGL R +++ + E LR LLH+L+ + PL T
Sbjct: 16 WREKNDRLVRQAKVAQNSGLTLR---RQQLAQDALEGLRGLLHSLQGLPAAVPVLPLELT 72
Query: 399 LLANFATLVSTYAKGFT 415
+ NF L ++ A+GFT
Sbjct: 73 VTCNFIILRASLAQGFT 89
>gi|110349767 calcium channel, voltage-dependent, L type, alpha 1S
subunit [Homo sapiens]
Length = 1873
Score = 30.8 bits (68), Expect = 4.9
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 263 LETLQKTVLRIK-ETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPDEVLQEAVPG 321
L L +T L+IK E + ++ +E R +++ + + ++ + D + P+ DEV
Sbjct: 1467 LFALVRTALKIKTEGNFEQANEELRAIIKKIWKRTSMKLLD-QVIPPIGDDEVTVGKFYA 1525
Query: 322 SIRTAEHFLGFLRRLLEYVKWR 343
+ EHF F++R EY +R
Sbjct: 1526 TFLIQEHFRKFMKRQEEYYGYR 1547
>gi|88196790 coiled-coil domain containing 88 [Homo sapiens]
Length = 1476
Score = 30.8 bits (68), Expect = 4.9
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 251 LTRRTLDRCQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVL 310
L R L L++L+ V ++ E + + L E +R +E + E A P L
Sbjct: 393 LLRTRLGEAHAELDSLRHQVDQLAEENVE-LELELQRSLEP--PPGSPGEAPLAGAAPSL 449
Query: 311 PDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESP 354
DEV +EA G +RT E LR LL+ ++ + QH + E+P
Sbjct: 450 QDEV-REAEAGRLRTLERENRELRGLLQVLQGQPGGQHPLLEAP 492
>gi|91598777 transmembrane protein 146 [Homo sapiens]
Length = 798
Score = 30.4 bits (67), Expect = 6.4
Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 10/70 (14%)
Query: 500 DQVAISSKFE----------TREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTV 549
DQ SS FE T ++AVI NL +VP I+ F Y + E
Sbjct: 282 DQTLFSSIFEAKITIHNIAVTENELAVITREDNLYYGNLGIVPSSIIKFADQYIWSEDVA 341
Query: 550 ASWYEQGILE 559
+ G LE
Sbjct: 342 LMFRSPGTLE 351
>gi|162287219 prune homolog 2 [Homo sapiens]
Length = 3088
Score = 30.0 bits (66), Expect = 8.3
Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 7/94 (7%)
Query: 235 EAHNIDNVCIDSMSVNLTRRTLDRCQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLRE 294
+A + ++C DS + T + L C G + L E DE+ + + R V E
Sbjct: 2100 QASDSPDICHDSEAKQETEKHLSACMGPEVESSELCLTEPEIDEEPIYEPGREFVPSNAE 2159
Query: 295 ASAARETDAHLANPVLPDEVLQEAVPGSIRTAEH 328
+ T VLP Q + GS + A H
Sbjct: 2160 LDSENAT-------VLPPIGYQADIKGSSQPASH 2186
>gi|113722120 G protein-coupled receptor 98 precursor [Homo sapiens]
Length = 6306
Score = 30.0 bits (66), Expect = 8.3
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 567 LFIETQDGAETSVALEKYQEACENGRGAILLSVARGKVSEGIDFV 611
LF+E Q+ +T V L ++ G+ A+ V G +EG+DF+
Sbjct: 2594 LFVEVQEQPQTLVELMIHRTGGSLGQVAVEWRVVGGTATEGLDFI 2638
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.139 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,245,836
Number of Sequences: 37866
Number of extensions: 1110337
Number of successful extensions: 2825
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2754
Number of HSP's gapped (non-prelim): 39
length of query: 760
length of database: 18,247,518
effective HSP length: 110
effective length of query: 650
effective length of database: 14,082,258
effective search space: 9153467700
effective search space used: 9153467700
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.