Search of human proteins with 157502167

Search of human proteins with 157502167

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|157502167 hypothetical protein LOC339778 [Homo sapiens]
         (201 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|157502167 hypothetical protein LOC339778 [Homo sapiens]            428   e-120
gi|153791167 hypothetical protein LOC730112 [Homo sapiens]             33   0.21 
gi|24234729 semaphorin 6D isoform 1 precursor [Homo sapiens]           30   1.4  
gi|24234741 semaphorin 6D isoform 4 precursor [Homo sapiens]           30   1.4  
gi|24234738 semaphorin 6D isoform 3 precursor [Homo sapiens]           30   1.4  
gi|24234735 semaphorin 6D isoform 2 precursor [Homo sapiens]           30   1.4  
gi|188497630 hypothetical protein LOC55571 [Homo sapiens]              29   2.4  
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa...    29   3.1  
gi|48717426 hypothetical protein LOC401565 [Homo sapiens]              28   4.0  

>gi|157502167 hypothetical protein LOC339778 [Homo sapiens]
          Length = 201

 Score =  428 bits (1100), Expect = e-120
 Identities = 201/201 (100%), Positives = 201/201 (100%)

Query: 1   MASRSAGTLLTEFNAAYVPPGLMPGYQGHVPTVAFSFGAPYGTTTLKYFQDHRNRAMEKS 60
           MASRSAGTLLTEFNAAYVPPGLMPGYQGHVPTVAFSFGAPYGTTTLKYFQDHRNRAMEKS
Sbjct: 1   MASRSAGTLLTEFNAAYVPPGLMPGYQGHVPTVAFSFGAPYGTTTLKYFQDHRNRAMEKS 60

Query: 61  HTPFSQGGHFPTIFSTNPNLLLMERASTRDRWLHKPSYTRFNLDSHRSTELTNFYQMVQQ 120
           HTPFSQGGHFPTIFSTNPNLLLMERASTRDRWLHKPSYTRFNLDSHRSTELTNFYQMVQQ
Sbjct: 61  HTPFSQGGHFPTIFSTNPNLLLMERASTRDRWLHKPSYTRFNLDSHRSTELTNFYQMVQQ 120

Query: 121 HRKYYQDKTGTVPRVPYFAMPVREPERYPLPTVLPPLCPKKKWHLLRLAPENLKTYQTFP 180
           HRKYYQDKTGTVPRVPYFAMPVREPERYPLPTVLPPLCPKKKWHLLRLAPENLKTYQTFP
Sbjct: 121 HRKYYQDKTGTVPRVPYFAMPVREPERYPLPTVLPPLCPKKKWHLLRLAPENLKTYQTFP 180

Query: 181 SGKRVSPQERKKRDCYFEFRA 201
           SGKRVSPQERKKRDCYFEFRA
Sbjct: 181 SGKRVSPQERKKRDCYFEFRA 201


>gi|153791167 hypothetical protein LOC730112 [Homo sapiens]
          Length = 216

 Score = 32.7 bits (73), Expect = 0.21
 Identities = 13/26 (50%), Positives = 15/26 (57%)

Query: 20 PGLMPGYQGHVPTVAFSFGAPYGTTT 45
          P  +PGY GH P + FS G  YG  T
Sbjct: 16 PHYIPGYTGHCPLLRFSVGQTYGQVT 41


>gi|24234729 semaphorin 6D isoform 1 precursor [Homo sapiens]
          Length = 1011

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 77  NPNLLLMERASTRDRWLHKPSYTRFNLDSHRSTELTNFYQMVQQHRKYYQDKTGTVPRVP 136
           +PN +L+ R  + +R  + P+ T   +D  + T ++   Q     +  Y    GT+PR  
Sbjct: 921 SPNGVLLSRQPSMNRGGYMPTPTGAKVDYIQGTPVSVHLQPSLSRQSSYTSN-GTLPRTG 979

Query: 137 YFAMPVREPERYPLPTVLP 155
               P  +P+  P P+ +P
Sbjct: 980 LKRTPSLKPDVPPKPSFVP 998


>gi|24234741 semaphorin 6D isoform 4 precursor [Homo sapiens]
          Length = 1073

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 77   NPNLLLMERASTRDRWLHKPSYTRFNLDSHRSTELTNFYQMVQQHRKYYQDKTGTVPRVP 136
            +PN +L+ R  + +R  + P+ T   +D  + T ++   Q     +  Y    GT+PR  
Sbjct: 983  SPNGVLLSRQPSMNRGGYMPTPTGAKVDYIQGTPVSVHLQPSLSRQSSYTSN-GTLPRTG 1041

Query: 137  YFAMPVREPERYPLPTVLP 155
                P  +P+  P P+ +P
Sbjct: 1042 LKRTPSLKPDVPPKPSFVP 1060


>gi|24234738 semaphorin 6D isoform 3 precursor [Homo sapiens]
          Length = 1017

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 77   NPNLLLMERASTRDRWLHKPSYTRFNLDSHRSTELTNFYQMVQQHRKYYQDKTGTVPRVP 136
            +PN +L+ R  + +R  + P+ T   +D  + T ++   Q     +  Y    GT+PR  
Sbjct: 927  SPNGVLLSRQPSMNRGGYMPTPTGAKVDYIQGTPVSVHLQPSLSRQSSYTSN-GTLPRTG 985

Query: 137  YFAMPVREPERYPLPTVLP 155
                P  +P+  P P+ +P
Sbjct: 986  LKRTPSLKPDVPPKPSFVP 1004


>gi|24234735 semaphorin 6D isoform 2 precursor [Homo sapiens]
          Length = 998

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 77  NPNLLLMERASTRDRWLHKPSYTRFNLDSHRSTELTNFYQMVQQHRKYYQDKTGTVPRVP 136
           +PN +L+ R  + +R  + P+ T   +D  + T ++   Q     +  Y    GT+PR  
Sbjct: 908 SPNGVLLSRQPSMNRGGYMPTPTGAKVDYIQGTPVSVHLQPSLSRQSSYTSN-GTLPRTG 966

Query: 137 YFAMPVREPERYPLPTVLP 155
               P  +P+  P P+ +P
Sbjct: 967 LKRTPSLKPDVPPKPSFVP 985


>gi|188497630 hypothetical protein LOC55571 [Homo sapiens]
          Length = 510

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 2/30 (6%)

Query: 143 REPERYPLPTVLPPLCPKKKWHL--LRLAP 170
           +EP+R PL   LPP+ P +K+ L  L LAP
Sbjct: 163 QEPDRPPLSGFLPPITPPEKFFLSQLMLAP 192


>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
           sapiens]
          Length = 2715

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 15/37 (40%), Positives = 18/37 (48%)

Query: 131 TVPRVPYFAMPVREPERYPLPTVLPPLCPKKKWHLLR 167
           T P VP    PV  P R P P   P   P+K+  +LR
Sbjct: 569 TSPPVPQEPAPVPSPPRAPTPPSTPVPLPEKRRSILR 605


>gi|48717426 hypothetical protein LOC401565 [Homo sapiens]
          Length = 317

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 12/32 (37%), Positives = 16/32 (50%)

Query: 20 PGLMPGYQGHVPTVAFSFGAPYGTTTLKYFQD 51
          P  +PGY G  P + +  G  YG TT +   D
Sbjct: 14 PHYVPGYAGFFPQLRYQVGNTYGRTTGQLLTD 45


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.135    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,800,583
Number of Sequences: 37866
Number of extensions: 407559
Number of successful extensions: 1023
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1012
Number of HSP's gapped (non-prelim): 15
length of query: 201
length of database: 18,247,518
effective HSP length: 97
effective length of query: 104
effective length of database: 14,574,516
effective search space: 1515749664
effective search space used: 1515749664
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.