Guide to the Human Genome
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Name: TMEM177 Sequence: fasta or formatted (311aa) NCBI GI: 157419118
Description:

transmembrane protein 177

Not currently referenced in the text

Other entries for this name:
alt mRNA {311aa} transmembrane protein 177
alt mRNA {311aa} transmembrane protein 177
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.6         36           2
 C cysteine            1.3          4           1
 D aspartate           2.6          8           1
 E glutamate           2.6          8           1
 F phenylalanine       4.8         15           1
 G glycine             9.0         28           2
 H histidine           3.5         11           1
 I isoleucine          2.3          7           1
 K lysine              2.3          7           1
 L leucine            12.9         40           2
 M methionine          1.3          4           1
 N asparagine          1.9          6           1
 P proline             7.4         23           2
 Q glutamine           4.2         13           1
 R arginine            6.1         19           2
 S serine              7.1         22           2
 T threonine           5.5         17           2
 V valine              8.0         25           2
 W tryptophan          2.3          7           1
 Y tyrosine            3.5         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transmembrane protein 177 
TMEM177               1.000   transmembrane protein 177 
TMEM177               1.000   transmembrane protein 177 
EPPK1                 0.013   epiplakin 1 
MLL2                  0.011   myeloid/lymphoid or mixed-lineage leukemia 2 
SEC24C                0.010   SEC24-related protein C 
SEC24C                0.010   SEC24-related protein C 
MEIS3                 0.008   Meis1, myeloid ecotropic viral integration site 1 ho...
MEIS3                 0.008   Meis1, myeloid ecotropic viral integration site 1 ho...
AIF1                  0.008   allograft inflammatory factor 1 isoform 2 
LOC100291299          0.007   PREDICTED: hypothetical protein XP_002347506 
LOC100287558          0.007   PREDICTED: hypothetical protein XP_002343325 
PLEKHG2               0.007   common-site lymphoma/leukemia guanine nucleotide ex...
SYNPO                 0.007   synaptopodin isoform B 
SYNPO                 0.007   synaptopodin isoform A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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