Search of human proteins with 157042800

Search of human proteins with 157042800

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|157042800 canopy 1 homolog [Homo sapiens]
         (92 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|157042800 canopy 1 homolog [Homo sapiens]                          192   6e-50
gi|7657176 canopy 2 homolog [Homo sapiens]                             70   4e-13
gi|32967601 ankyrin 3 isoform 1 [Homo sapiens]                         32   0.11 
gi|46195765 unc-13 homolog D [Homo sapiens]                            29   0.72 
gi|57768564 hypothetical protein LOC23281 isoform b [Homo sapiens]     29   0.72 
gi|140161498 hypothetical protein LOC23281 isoform a [Homo sapiens]    29   0.72 
gi|217272804 hyaluronan-mediated motility receptor isoform d [Ho...    28   1.2  
gi|217272802 hyaluronan-mediated motility receptor isoform a [Ho...    28   1.2  
gi|217416398 hyaluronan-mediated motility receptor isoform c [Ho...    28   1.2  
gi|217416394 hyaluronan-mediated motility receptor isoform b [Ho...    28   1.2  
gi|34787409 hypothetical protein LOC57148 [Homo sapiens]               28   1.6  
gi|52145305 patched 2 [Homo sapiens]                                   27   3.5  
gi|197116355 ubiquitin specific peptidase 46 isoform 2 [Homo sap...    26   6.1  
gi|31377709 ubiquitin specific peptidase 46 isoform 1 [Homo sapi...    26   6.1  

>gi|157042800 canopy 1 homolog [Homo sapiens]
          Length = 92

 Score =  192 bits (487), Expect = 6e-50
 Identities = 92/92 (100%), Positives = 92/92 (100%)

Query: 1  MNDYKLEEDPVTKERTFKRFAPRKGDKIYQEFKKLYFYSDAYRPLKFACETIIEEYEDEI 60
          MNDYKLEEDPVTKERTFKRFAPRKGDKIYQEFKKLYFYSDAYRPLKFACETIIEEYEDEI
Sbjct: 1  MNDYKLEEDPVTKERTFKRFAPRKGDKIYQEFKKLYFYSDAYRPLKFACETIIEEYEDEI 60

Query: 61 SSLIAQETHYLADKLCSEKSDLCETSANHTEL 92
          SSLIAQETHYLADKLCSEKSDLCETSANHTEL
Sbjct: 61 SSLIAQETHYLADKLCSEKSDLCETSANHTEL 92


>gi|7657176 canopy 2 homolog [Homo sapiens]
          Length = 182

 Score = 70.1 bits (170), Expect = 4e-13
 Identities = 35/94 (37%), Positives = 55/94 (58%), Gaps = 2/94 (2%)

Query: 1   MNDYKLEEDPVTKERTFKRFAPRKGDKIYQEFKKLYFYSDAYRPLKFACETIIEEYEDEI 60
           M +Y  + DP T  + + R   R G+    + + +   SD    LKFACE+I+EEYEDE+
Sbjct: 89  MKEYGEQIDPSTHRKNYVRVVGRNGESSELDLQGIRIDSDISGTLKFACESIVEEYEDEL 148

Query: 61  SSLIAQETHYLADKLCSEKSDLCETS--ANHTEL 92
               ++E   + DKLCS+++DLC+ +   +H EL
Sbjct: 149 IEFFSREADNVKDKLCSKRTDLCDHALHISHDEL 182


>gi|32967601 ankyrin 3 isoform 1 [Homo sapiens]
          Length = 4377

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 15/51 (29%), Positives = 26/51 (50%)

Query: 40   DAYRPLKFACETIIEEYEDEISSLIAQETHYLADKLCSEKSDLCETSANHT 90
            D+Y+ LK   +  IE ++DE+S L  +   +    L SEK D+  +    +
Sbjct: 2433 DSYKTLKLLSQHSIEYHDDELSELRGESYRFAEKMLLSEKLDVSHSDTEES 2483


>gi|46195765 unc-13 homolog D [Homo sapiens]
          Length = 1090

 Score = 29.3 bits (64), Expect = 0.72
 Identities = 14/69 (20%), Positives = 34/69 (49%)

Query: 23  RKGDKIYQEFKKLYFYSDAYRPLKFACETIIEEYEDEISSLIAQETHYLADKLCSEKSDL 82
           R  DKI+    K++ +S A+R L++     ++++   +  +++ E      +L     +L
Sbjct: 507 RTWDKIFHNTLKIHLFSMAFRELQWLVAKRVQDHTTVVGDVVSPEMGESLFQLYISLKEL 566

Query: 83  CETSANHTE 91
           C+   + +E
Sbjct: 567 CQLRMSSSE 575


>gi|57768564 hypothetical protein LOC23281 isoform b [Homo sapiens]
          Length = 348

 Score = 29.3 bits (64), Expect = 0.72
 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 6/88 (6%)

Query: 5   KLEEDPVTKERTFKRFAPRKGDKIYQEFKKLYFYSDAYRPLKFACET--IIEEYEDEISS 62
           KL+++    ER F+    R G +   E ++L    +    L+F  E   + EE+ D++ S
Sbjct: 49  KLQKEKEELERRFEDEVKRLGWQQQAELQEL----EERLQLQFEAEMARLQEEHGDQLLS 104

Query: 63  LIAQETHYLADKLCSEKSDLCETSANHT 90
           +  Q    + D   S  + L E   NHT
Sbjct: 105 IRCQHQEQVEDLTASHDAALLEMENNHT 132


>gi|140161498 hypothetical protein LOC23281 isoform a [Homo sapiens]
          Length = 1379

 Score = 29.3 bits (64), Expect = 0.72
 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 6/88 (6%)

Query: 5    KLEEDPVTKERTFKRFAPRKGDKIYQEFKKLYFYSDAYRPLKFACET--IIEEYEDEISS 62
            KL+++    ER F+    R G +   E ++L    +    L+F  E   + EE+ D++ S
Sbjct: 1080 KLQKEKEELERRFEDEVKRLGWQQQAELQEL----EERLQLQFEAEMARLQEEHGDQLLS 1135

Query: 63   LIAQETHYLADKLCSEKSDLCETSANHT 90
            +  Q    + D   S  + L E   NHT
Sbjct: 1136 IRCQHQEQVEDLTASHDAALLEMENNHT 1163


>gi|217272804 hyaluronan-mediated motility receptor isoform d [Homo
           sapiens]
          Length = 638

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 1/62 (1%)

Query: 30  QEFKKLYFYSDAYRPLKFACETIIEEYEDEISSLIAQETHYLADKLCSEKSDLCETSANH 89
           +E K+     D  +  +   E ++++ E+E  S  A+E   L +KL  ++++L ++SA H
Sbjct: 290 EELKQTLDELDKLQQKEEQAERLVKQLEEEAKSR-AEELKLLEEKLKGKEAELEKSSAAH 348

Query: 90  TE 91
           T+
Sbjct: 349 TQ 350


>gi|217272802 hyaluronan-mediated motility receptor isoform a [Homo
           sapiens]
          Length = 725

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 1/62 (1%)

Query: 30  QEFKKLYFYSDAYRPLKFACETIIEEYEDEISSLIAQETHYLADKLCSEKSDLCETSANH 89
           +E K+     D  +  +   E ++++ E+E  S  A+E   L +KL  ++++L ++SA H
Sbjct: 377 EELKQTLDELDKLQQKEEQAERLVKQLEEEAKSR-AEELKLLEEKLKGKEAELEKSSAAH 435

Query: 90  TE 91
           T+
Sbjct: 436 TQ 437


>gi|217416398 hyaluronan-mediated motility receptor isoform c [Homo
           sapiens]
          Length = 709

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 1/62 (1%)

Query: 30  QEFKKLYFYSDAYRPLKFACETIIEEYEDEISSLIAQETHYLADKLCSEKSDLCETSANH 89
           +E K+     D  +  +   E ++++ E+E  S  A+E   L +KL  ++++L ++SA H
Sbjct: 361 EELKQTLDELDKLQQKEEQAERLVKQLEEEAKSR-AEELKLLEEKLKGKEAELEKSSAAH 419

Query: 90  TE 91
           T+
Sbjct: 420 TQ 421


>gi|217416394 hyaluronan-mediated motility receptor isoform b [Homo
           sapiens]
          Length = 724

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 1/62 (1%)

Query: 30  QEFKKLYFYSDAYRPLKFACETIIEEYEDEISSLIAQETHYLADKLCSEKSDLCETSANH 89
           +E K+     D  +  +   E ++++ E+E  S  A+E   L +KL  ++++L ++SA H
Sbjct: 376 EELKQTLDELDKLQQKEEQAERLVKQLEEEAKSR-AEELKLLEEKLKGKEAELEKSSAAH 434

Query: 90  TE 91
           T+
Sbjct: 435 TQ 436


>gi|34787409 hypothetical protein LOC57148 [Homo sapiens]
          Length = 1494

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 25   GDKIYQEFKKLYFYSDAYRPLKFACETIIEEYEDEISSLIAQE----THYLADKLCSEKS 80
            G  I+   KK+ +Y+DA   + F   + +E   D + S I+ +       L   +  + S
Sbjct: 1241 GASIFNGQKKVLYYADALTEIAFVVPSPVESLTDSLESNISDQDSDSNMDLMPGILKQPS 1300

Query: 81   DLCETSANHTE 91
               E   NHT+
Sbjct: 1301 LTLELFPNHTD 1311


>gi|52145305 patched 2 [Homo sapiens]
          Length = 1203

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 50  ETIIEEYEDEISSLIAQETHYLADKLCSE 78
           ET +E+   E+ S ++QE HY  +KL  E
Sbjct: 79  ETNLEQLWVEVGSRVSQELHYTKEKLGEE 107


>gi|197116355 ubiquitin specific peptidase 46 isoform 2 [Homo
           sapiens]
          Length = 359

 Score = 26.2 bits (56), Expect = 6.1
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 10/53 (18%)

Query: 49  CETIIEEYEDEISSLIAQE-----THYLAD-----KLCSEKSDLCETSANHTE 91
           CET+  + ED +   +  E     TH L D      LCSE+   CET  +  E
Sbjct: 178 CETVSSKDEDFLDLSVDVEQNTSITHCLRDFSNTETLCSEQKYYCETCCSKQE 230


>gi|31377709 ubiquitin specific peptidase 46 isoform 1 [Homo
           sapiens]
          Length = 366

 Score = 26.2 bits (56), Expect = 6.1
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 10/53 (18%)

Query: 49  CETIIEEYEDEISSLIAQE-----THYLAD-----KLCSEKSDLCETSANHTE 91
           CET+  + ED +   +  E     TH L D      LCSE+   CET  +  E
Sbjct: 185 CETVSSKDEDFLDLSVDVEQNTSITHCLRDFSNTETLCSEQKYYCETCCSKQE 237


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.132    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,462,342
Number of Sequences: 37866
Number of extensions: 126537
Number of successful extensions: 340
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 334
Number of HSP's gapped (non-prelim): 14
length of query: 92
length of database: 18,247,518
effective HSP length: 63
effective length of query: 29
effective length of database: 15,861,960
effective search space: 459996840
effective search space used: 459996840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.