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Search of human proteins with 156630995
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|156630995 neurotrophin 3 isoform 1 preproprotein [Homo
sapiens]
(270 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|156630995 neurotrophin 3 isoform 1 preproprotein [Homo sapiens] 546 e-156
gi|4505469 neurotrophin 3 isoform 2 preproprotein [Homo sapiens] 523 e-149
gi|70995319 nerve growth factor, beta polypeptide precursor [Hom... 183 2e-46
gi|219842298 brain-derived neurotrophic factor isoform e [Homo s... 172 3e-43
gi|219842314 brain-derived neurotrophic factor isoform a preprop... 172 4e-43
gi|219842312 brain-derived neurotrophic factor isoform a preprop... 172 4e-43
gi|219842309 brain-derived neurotrophic factor isoform a preprop... 172 4e-43
gi|219842306 brain-derived neurotrophic factor isoform a preprop... 172 4e-43
gi|219842303 brain-derived neurotrophic factor isoform a preprop... 172 4e-43
gi|219842300 brain-derived neurotrophic factor isoform a preprop... 172 4e-43
gi|219842296 brain-derived neurotrophic factor isoform d preprop... 172 4e-43
gi|219842294 brain-derived neurotrophic factor isoform a preprop... 172 4e-43
gi|219842292 brain-derived neurotrophic factor isoform a preprop... 172 4e-43
gi|219842290 brain-derived neurotrophic factor isoform a preprop... 172 4e-43
gi|219842288 brain-derived neurotrophic factor isoform a preprop... 172 4e-43
gi|25306264 brain-derived neurotrophic factor isoform a prepropr... 172 4e-43
gi|25306261 brain-derived neurotrophic factor isoform c prepropr... 172 4e-43
gi|25306267 brain-derived neurotrophic factor isoform a prepropr... 172 4e-43
gi|25306257 brain-derived neurotrophic factor isoform a prepropr... 172 4e-43
gi|25306253 brain-derived neurotrophic factor isoform a prepropr... 172 4e-43
gi|25306235 brain-derived neurotrophic factor isoform b prepropr... 172 4e-43
gi|5453808 neurotrophin 5 preproprotein [Homo sapiens] 167 9e-42
gi|38787935 BMP-2 inducible kinase isoform a [Homo sapiens] 32 0.76
gi|38045890 CUB and Sushi multiple domains 3 isoform 2 [Homo sap... 32 0.76
gi|38045888 CUB and Sushi multiple domains 3 isoform 1 [Homo sap... 32 0.76
gi|31581524 cordon-bleu homolog [Homo sapiens] 30 2.2
gi|46276868 hypothetical protein LOC9710 [Homo sapiens] 30 2.9
gi|169160953 PREDICTED: hypothetical LOC644006 [Homo sapiens] 29 3.8
gi|40789270 zinc finger protein 573 [Homo sapiens] 29 3.8
gi|31657092 ATP binding cassette, sub-family A (ABC1), member 13... 28 6.5
>gi|156630995 neurotrophin 3 isoform 1 preproprotein [Homo sapiens]
Length = 270
Score = 546 bits (1407), Expect = e-156
Identities = 270/270 (100%), Positives = 270/270 (100%)
Query: 1 MVTFATILQVNKVMSILFYVIFLAYLRGIQGNNMDQRSLPEDSLNSLIIKLIQADILKNK 60
MVTFATILQVNKVMSILFYVIFLAYLRGIQGNNMDQRSLPEDSLNSLIIKLIQADILKNK
Sbjct: 1 MVTFATILQVNKVMSILFYVIFLAYLRGIQGNNMDQRSLPEDSLNSLIIKLIQADILKNK 60
Query: 61 LSKQMVDVKENYQSTLPKAEAPREPERGGPAKSAFQPVIAMDTELLRQQRRYNSPRVLLS 120
LSKQMVDVKENYQSTLPKAEAPREPERGGPAKSAFQPVIAMDTELLRQQRRYNSPRVLLS
Sbjct: 61 LSKQMVDVKENYQSTLPKAEAPREPERGGPAKSAFQPVIAMDTELLRQQRRYNSPRVLLS 120
Query: 121 DSTPLEPPPLYLMEDYVGSPVVANRTSRRKRYAEHKSHRGEYSVCDSESLWVTDKSSAID 180
DSTPLEPPPLYLMEDYVGSPVVANRTSRRKRYAEHKSHRGEYSVCDSESLWVTDKSSAID
Sbjct: 121 DSTPLEPPPLYLMEDYVGSPVVANRTSRRKRYAEHKSHRGEYSVCDSESLWVTDKSSAID 180
Query: 181 IRGHQVTVLGEIKTGNSPVKQYFYETRCKEARPVKNGCRGIDDKHWNSQCKTSQTYVRAL 240
IRGHQVTVLGEIKTGNSPVKQYFYETRCKEARPVKNGCRGIDDKHWNSQCKTSQTYVRAL
Sbjct: 181 IRGHQVTVLGEIKTGNSPVKQYFYETRCKEARPVKNGCRGIDDKHWNSQCKTSQTYVRAL 240
Query: 241 TSENNKLVGWRWIRIDTSCVCALSRKIGRT 270
TSENNKLVGWRWIRIDTSCVCALSRKIGRT
Sbjct: 241 TSENNKLVGWRWIRIDTSCVCALSRKIGRT 270
>gi|4505469 neurotrophin 3 isoform 2 preproprotein [Homo sapiens]
Length = 257
Score = 523 bits (1346), Expect = e-149
Identities = 257/257 (100%), Positives = 257/257 (100%)
Query: 14 MSILFYVIFLAYLRGIQGNNMDQRSLPEDSLNSLIIKLIQADILKNKLSKQMVDVKENYQ 73
MSILFYVIFLAYLRGIQGNNMDQRSLPEDSLNSLIIKLIQADILKNKLSKQMVDVKENYQ
Sbjct: 1 MSILFYVIFLAYLRGIQGNNMDQRSLPEDSLNSLIIKLIQADILKNKLSKQMVDVKENYQ 60
Query: 74 STLPKAEAPREPERGGPAKSAFQPVIAMDTELLRQQRRYNSPRVLLSDSTPLEPPPLYLM 133
STLPKAEAPREPERGGPAKSAFQPVIAMDTELLRQQRRYNSPRVLLSDSTPLEPPPLYLM
Sbjct: 61 STLPKAEAPREPERGGPAKSAFQPVIAMDTELLRQQRRYNSPRVLLSDSTPLEPPPLYLM 120
Query: 134 EDYVGSPVVANRTSRRKRYAEHKSHRGEYSVCDSESLWVTDKSSAIDIRGHQVTVLGEIK 193
EDYVGSPVVANRTSRRKRYAEHKSHRGEYSVCDSESLWVTDKSSAIDIRGHQVTVLGEIK
Sbjct: 121 EDYVGSPVVANRTSRRKRYAEHKSHRGEYSVCDSESLWVTDKSSAIDIRGHQVTVLGEIK 180
Query: 194 TGNSPVKQYFYETRCKEARPVKNGCRGIDDKHWNSQCKTSQTYVRALTSENNKLVGWRWI 253
TGNSPVKQYFYETRCKEARPVKNGCRGIDDKHWNSQCKTSQTYVRALTSENNKLVGWRWI
Sbjct: 181 TGNSPVKQYFYETRCKEARPVKNGCRGIDDKHWNSQCKTSQTYVRALTSENNKLVGWRWI 240
Query: 254 RIDTSCVCALSRKIGRT 270
RIDTSCVCALSRKIGRT
Sbjct: 241 RIDTSCVCALSRKIGRT 257
>gi|70995319 nerve growth factor, beta polypeptide precursor [Homo
sapiens]
Length = 241
Score = 183 bits (464), Expect = 2e-46
Identities = 110/258 (42%), Positives = 148/258 (57%), Gaps = 21/258 (8%)
Query: 14 MSILFYVIFLAYLRGIQGNNMDQRSLPEDSLNSLIIKLIQADILKNKLSKQMVDVKENYQ 73
MS+LFY + A+L GIQ + ++P + QA K ++ +
Sbjct: 1 MSMLFYTLITAFLIGIQAEPHSESNVPAGHT------IPQAHWTK---------LQHSLD 45
Query: 74 STLPKAEAPREPERGGPAKSAFQPV-IAMDTELLRQQRRYNSPRVLLSDSTPLEPPPLYL 132
+ L +A + P A+ A Q I +D L ++ RR SPRVL S P E
Sbjct: 46 TALRRARSA--PAAAIAARVAGQTRNITVDPRLFKK-RRLRSPRVLFSTQPPREAADTQD 102
Query: 133 MEDYVGSPVVANRTSRRKRYAEHKS-HRGEYSVCDSESLWVTDKSSAIDIRGHQVTVLGE 191
++ VG NRT R KR + H HRGE+SVCDS S+WV DK++A DI+G +V VLGE
Sbjct: 103 LDFEVGGAAPFNRTHRSKRSSSHPIFHRGEFSVCDSVSVWVGDKTTATDIKGKEVMVLGE 162
Query: 192 IKTGNSPVKQYFYETRCKEARPVKNGCRGIDDKHWNSQCKTSQTYVRALTSENNKLVGWR 251
+ NS KQYF+ET+C++ PV +GCRGID KHWNS C T+ T+V+ALT + K WR
Sbjct: 163 VNINNSVFKQYFFETKCRDPNPVDSGCRGIDSKHWNSYCTTTHTFVKALTMD-GKQAAWR 221
Query: 252 WIRIDTSCVCALSRKIGR 269
+IRIDT+CVC LSRK R
Sbjct: 222 FIRIDTACVCVLSRKAVR 239
>gi|219842298 brain-derived neurotrophic factor isoform e [Homo
sapiens]
Length = 329
Score = 172 bits (436), Expect = 3e-43
Identities = 106/281 (37%), Positives = 154/281 (54%), Gaps = 39/281 (13%)
Query: 4 FATILQVNKVMSILFYVIFLAYLRGIQGNNMDQRSLPEDSLNSLIIKLIQADILKNKLSK 63
F QV +VM+ILF + ++Y ++ M + ++ + +
Sbjct: 73 FIKFHQVRRVMTILFLTMVISYFGCMKAAPMKEANI------------------RGQGGL 114
Query: 64 QMVDVKENYQSTLPKAEAPREPERGGPAKS-AFQPVIAMDTELLRQQRRYN--------- 113
V+ + TL P+ RG + + F+ VI ELL + ++
Sbjct: 115 AYPGVRTH--GTLESVNGPKAGSRGLTSLADTFEHVIE---ELLDEDQKVRPNEENNKDA 169
Query: 114 ---SPRVLLSDSTPLEPPPLYLMEDYVGSPVVANRTSRRKRYAEHKSHRGEYSVCDSESL 170
+ RV+LS PLEPP L+L+E+Y AN + R +R+++ + RGE SVCDS S
Sbjct: 170 DLYTSRVMLSSQVPLEPPLLFLLEEYKNYLDAANMSMRVRRHSD-PARRGELSVCDSISE 228
Query: 171 WVT--DKSSAIDIRGHQVTVLGEIKTGNSPVKQYFYETRCKEARPVKNGCRGIDDKHWNS 228
WVT DK +A+D+ G VTVL ++ +KQYFYET+C K GCRGID +HWNS
Sbjct: 229 WVTAADKKTAVDMSGGTVTVLEKVPVSKGQLKQYFYETKCNPMGYTKEGCRGIDKRHWNS 288
Query: 229 QCKTSQTYVRALTSENNKLVGWRWIRIDTSCVCALSRKIGR 269
QC+T+Q+YVRALT ++ K +GWR+IRIDTSCVC L+ K GR
Sbjct: 289 QCRTTQSYVRALTMDSKKRIGWRFIRIDTSCVCTLTIKRGR 329
>gi|219842314 brain-derived neurotrophic factor isoform a
preproprotein [Homo sapiens]
Length = 247
Score = 172 bits (435), Expect = 4e-43
Identities = 84/156 (53%), Positives = 110/156 (70%), Gaps = 3/156 (1%)
Query: 116 RVLLSDSTPLEPPPLYLMEDYVGSPVVANRTSRRKRYAEHKSHRGEYSVCDSESLWVT-- 173
RV+LS PLEPP L+L+E+Y AN + R +R+++ + RGE SVCDS S WVT
Sbjct: 93 RVMLSSQVPLEPPLLFLLEEYKNYLDAANMSMRVRRHSD-PARRGELSVCDSISEWVTAA 151
Query: 174 DKSSAIDIRGHQVTVLGEIKTGNSPVKQYFYETRCKEARPVKNGCRGIDDKHWNSQCKTS 233
DK +A+D+ G VTVL ++ +KQYFYET+C K GCRGID +HWNSQC+T+
Sbjct: 152 DKKTAVDMSGGTVTVLEKVPVSKGQLKQYFYETKCNPMGYTKEGCRGIDKRHWNSQCRTT 211
Query: 234 QTYVRALTSENNKLVGWRWIRIDTSCVCALSRKIGR 269
Q+YVRALT ++ K +GWR+IRIDTSCVC L+ K GR
Sbjct: 212 QSYVRALTMDSKKRIGWRFIRIDTSCVCTLTIKRGR 247
>gi|219842312 brain-derived neurotrophic factor isoform a
preproprotein [Homo sapiens]
Length = 247
Score = 172 bits (435), Expect = 4e-43
Identities = 84/156 (53%), Positives = 110/156 (70%), Gaps = 3/156 (1%)
Query: 116 RVLLSDSTPLEPPPLYLMEDYVGSPVVANRTSRRKRYAEHKSHRGEYSVCDSESLWVT-- 173
RV+LS PLEPP L+L+E+Y AN + R +R+++ + RGE SVCDS S WVT
Sbjct: 93 RVMLSSQVPLEPPLLFLLEEYKNYLDAANMSMRVRRHSD-PARRGELSVCDSISEWVTAA 151
Query: 174 DKSSAIDIRGHQVTVLGEIKTGNSPVKQYFYETRCKEARPVKNGCRGIDDKHWNSQCKTS 233
DK +A+D+ G VTVL ++ +KQYFYET+C K GCRGID +HWNSQC+T+
Sbjct: 152 DKKTAVDMSGGTVTVLEKVPVSKGQLKQYFYETKCNPMGYTKEGCRGIDKRHWNSQCRTT 211
Query: 234 QTYVRALTSENNKLVGWRWIRIDTSCVCALSRKIGR 269
Q+YVRALT ++ K +GWR+IRIDTSCVC L+ K GR
Sbjct: 212 QSYVRALTMDSKKRIGWRFIRIDTSCVCTLTIKRGR 247
>gi|219842309 brain-derived neurotrophic factor isoform a
preproprotein [Homo sapiens]
Length = 247
Score = 172 bits (435), Expect = 4e-43
Identities = 84/156 (53%), Positives = 110/156 (70%), Gaps = 3/156 (1%)
Query: 116 RVLLSDSTPLEPPPLYLMEDYVGSPVVANRTSRRKRYAEHKSHRGEYSVCDSESLWVT-- 173
RV+LS PLEPP L+L+E+Y AN + R +R+++ + RGE SVCDS S WVT
Sbjct: 93 RVMLSSQVPLEPPLLFLLEEYKNYLDAANMSMRVRRHSD-PARRGELSVCDSISEWVTAA 151
Query: 174 DKSSAIDIRGHQVTVLGEIKTGNSPVKQYFYETRCKEARPVKNGCRGIDDKHWNSQCKTS 233
DK +A+D+ G VTVL ++ +KQYFYET+C K GCRGID +HWNSQC+T+
Sbjct: 152 DKKTAVDMSGGTVTVLEKVPVSKGQLKQYFYETKCNPMGYTKEGCRGIDKRHWNSQCRTT 211
Query: 234 QTYVRALTSENNKLVGWRWIRIDTSCVCALSRKIGR 269
Q+YVRALT ++ K +GWR+IRIDTSCVC L+ K GR
Sbjct: 212 QSYVRALTMDSKKRIGWRFIRIDTSCVCTLTIKRGR 247
>gi|219842306 brain-derived neurotrophic factor isoform a
preproprotein [Homo sapiens]
Length = 247
Score = 172 bits (435), Expect = 4e-43
Identities = 84/156 (53%), Positives = 110/156 (70%), Gaps = 3/156 (1%)
Query: 116 RVLLSDSTPLEPPPLYLMEDYVGSPVVANRTSRRKRYAEHKSHRGEYSVCDSESLWVT-- 173
RV+LS PLEPP L+L+E+Y AN + R +R+++ + RGE SVCDS S WVT
Sbjct: 93 RVMLSSQVPLEPPLLFLLEEYKNYLDAANMSMRVRRHSD-PARRGELSVCDSISEWVTAA 151
Query: 174 DKSSAIDIRGHQVTVLGEIKTGNSPVKQYFYETRCKEARPVKNGCRGIDDKHWNSQCKTS 233
DK +A+D+ G VTVL ++ +KQYFYET+C K GCRGID +HWNSQC+T+
Sbjct: 152 DKKTAVDMSGGTVTVLEKVPVSKGQLKQYFYETKCNPMGYTKEGCRGIDKRHWNSQCRTT 211
Query: 234 QTYVRALTSENNKLVGWRWIRIDTSCVCALSRKIGR 269
Q+YVRALT ++ K +GWR+IRIDTSCVC L+ K GR
Sbjct: 212 QSYVRALTMDSKKRIGWRFIRIDTSCVCTLTIKRGR 247
>gi|219842303 brain-derived neurotrophic factor isoform a
preproprotein [Homo sapiens]
Length = 247
Score = 172 bits (435), Expect = 4e-43
Identities = 84/156 (53%), Positives = 110/156 (70%), Gaps = 3/156 (1%)
Query: 116 RVLLSDSTPLEPPPLYLMEDYVGSPVVANRTSRRKRYAEHKSHRGEYSVCDSESLWVT-- 173
RV+LS PLEPP L+L+E+Y AN + R +R+++ + RGE SVCDS S WVT
Sbjct: 93 RVMLSSQVPLEPPLLFLLEEYKNYLDAANMSMRVRRHSD-PARRGELSVCDSISEWVTAA 151
Query: 174 DKSSAIDIRGHQVTVLGEIKTGNSPVKQYFYETRCKEARPVKNGCRGIDDKHWNSQCKTS 233
DK +A+D+ G VTVL ++ +KQYFYET+C K GCRGID +HWNSQC+T+
Sbjct: 152 DKKTAVDMSGGTVTVLEKVPVSKGQLKQYFYETKCNPMGYTKEGCRGIDKRHWNSQCRTT 211
Query: 234 QTYVRALTSENNKLVGWRWIRIDTSCVCALSRKIGR 269
Q+YVRALT ++ K +GWR+IRIDTSCVC L+ K GR
Sbjct: 212 QSYVRALTMDSKKRIGWRFIRIDTSCVCTLTIKRGR 247
>gi|219842300 brain-derived neurotrophic factor isoform a
preproprotein [Homo sapiens]
Length = 247
Score = 172 bits (435), Expect = 4e-43
Identities = 84/156 (53%), Positives = 110/156 (70%), Gaps = 3/156 (1%)
Query: 116 RVLLSDSTPLEPPPLYLMEDYVGSPVVANRTSRRKRYAEHKSHRGEYSVCDSESLWVT-- 173
RV+LS PLEPP L+L+E+Y AN + R +R+++ + RGE SVCDS S WVT
Sbjct: 93 RVMLSSQVPLEPPLLFLLEEYKNYLDAANMSMRVRRHSD-PARRGELSVCDSISEWVTAA 151
Query: 174 DKSSAIDIRGHQVTVLGEIKTGNSPVKQYFYETRCKEARPVKNGCRGIDDKHWNSQCKTS 233
DK +A+D+ G VTVL ++ +KQYFYET+C K GCRGID +HWNSQC+T+
Sbjct: 152 DKKTAVDMSGGTVTVLEKVPVSKGQLKQYFYETKCNPMGYTKEGCRGIDKRHWNSQCRTT 211
Query: 234 QTYVRALTSENNKLVGWRWIRIDTSCVCALSRKIGR 269
Q+YVRALT ++ K +GWR+IRIDTSCVC L+ K GR
Sbjct: 212 QSYVRALTMDSKKRIGWRFIRIDTSCVCTLTIKRGR 247
>gi|219842296 brain-derived neurotrophic factor isoform d
preproprotein [Homo sapiens]
Length = 276
Score = 172 bits (435), Expect = 4e-43
Identities = 84/156 (53%), Positives = 110/156 (70%), Gaps = 3/156 (1%)
Query: 116 RVLLSDSTPLEPPPLYLMEDYVGSPVVANRTSRRKRYAEHKSHRGEYSVCDSESLWVT-- 173
RV+LS PLEPP L+L+E+Y AN + R +R+++ + RGE SVCDS S WVT
Sbjct: 122 RVMLSSQVPLEPPLLFLLEEYKNYLDAANMSMRVRRHSD-PARRGELSVCDSISEWVTAA 180
Query: 174 DKSSAIDIRGHQVTVLGEIKTGNSPVKQYFYETRCKEARPVKNGCRGIDDKHWNSQCKTS 233
DK +A+D+ G VTVL ++ +KQYFYET+C K GCRGID +HWNSQC+T+
Sbjct: 181 DKKTAVDMSGGTVTVLEKVPVSKGQLKQYFYETKCNPMGYTKEGCRGIDKRHWNSQCRTT 240
Query: 234 QTYVRALTSENNKLVGWRWIRIDTSCVCALSRKIGR 269
Q+YVRALT ++ K +GWR+IRIDTSCVC L+ K GR
Sbjct: 241 QSYVRALTMDSKKRIGWRFIRIDTSCVCTLTIKRGR 276
>gi|219842294 brain-derived neurotrophic factor isoform a
preproprotein [Homo sapiens]
Length = 247
Score = 172 bits (435), Expect = 4e-43
Identities = 84/156 (53%), Positives = 110/156 (70%), Gaps = 3/156 (1%)
Query: 116 RVLLSDSTPLEPPPLYLMEDYVGSPVVANRTSRRKRYAEHKSHRGEYSVCDSESLWVT-- 173
RV+LS PLEPP L+L+E+Y AN + R +R+++ + RGE SVCDS S WVT
Sbjct: 93 RVMLSSQVPLEPPLLFLLEEYKNYLDAANMSMRVRRHSD-PARRGELSVCDSISEWVTAA 151
Query: 174 DKSSAIDIRGHQVTVLGEIKTGNSPVKQYFYETRCKEARPVKNGCRGIDDKHWNSQCKTS 233
DK +A+D+ G VTVL ++ +KQYFYET+C K GCRGID +HWNSQC+T+
Sbjct: 152 DKKTAVDMSGGTVTVLEKVPVSKGQLKQYFYETKCNPMGYTKEGCRGIDKRHWNSQCRTT 211
Query: 234 QTYVRALTSENNKLVGWRWIRIDTSCVCALSRKIGR 269
Q+YVRALT ++ K +GWR+IRIDTSCVC L+ K GR
Sbjct: 212 QSYVRALTMDSKKRIGWRFIRIDTSCVCTLTIKRGR 247
>gi|219842292 brain-derived neurotrophic factor isoform a
preproprotein [Homo sapiens]
Length = 247
Score = 172 bits (435), Expect = 4e-43
Identities = 84/156 (53%), Positives = 110/156 (70%), Gaps = 3/156 (1%)
Query: 116 RVLLSDSTPLEPPPLYLMEDYVGSPVVANRTSRRKRYAEHKSHRGEYSVCDSESLWVT-- 173
RV+LS PLEPP L+L+E+Y AN + R +R+++ + RGE SVCDS S WVT
Sbjct: 93 RVMLSSQVPLEPPLLFLLEEYKNYLDAANMSMRVRRHSD-PARRGELSVCDSISEWVTAA 151
Query: 174 DKSSAIDIRGHQVTVLGEIKTGNSPVKQYFYETRCKEARPVKNGCRGIDDKHWNSQCKTS 233
DK +A+D+ G VTVL ++ +KQYFYET+C K GCRGID +HWNSQC+T+
Sbjct: 152 DKKTAVDMSGGTVTVLEKVPVSKGQLKQYFYETKCNPMGYTKEGCRGIDKRHWNSQCRTT 211
Query: 234 QTYVRALTSENNKLVGWRWIRIDTSCVCALSRKIGR 269
Q+YVRALT ++ K +GWR+IRIDTSCVC L+ K GR
Sbjct: 212 QSYVRALTMDSKKRIGWRFIRIDTSCVCTLTIKRGR 247
>gi|219842290 brain-derived neurotrophic factor isoform a
preproprotein [Homo sapiens]
Length = 247
Score = 172 bits (435), Expect = 4e-43
Identities = 84/156 (53%), Positives = 110/156 (70%), Gaps = 3/156 (1%)
Query: 116 RVLLSDSTPLEPPPLYLMEDYVGSPVVANRTSRRKRYAEHKSHRGEYSVCDSESLWVT-- 173
RV+LS PLEPP L+L+E+Y AN + R +R+++ + RGE SVCDS S WVT
Sbjct: 93 RVMLSSQVPLEPPLLFLLEEYKNYLDAANMSMRVRRHSD-PARRGELSVCDSISEWVTAA 151
Query: 174 DKSSAIDIRGHQVTVLGEIKTGNSPVKQYFYETRCKEARPVKNGCRGIDDKHWNSQCKTS 233
DK +A+D+ G VTVL ++ +KQYFYET+C K GCRGID +HWNSQC+T+
Sbjct: 152 DKKTAVDMSGGTVTVLEKVPVSKGQLKQYFYETKCNPMGYTKEGCRGIDKRHWNSQCRTT 211
Query: 234 QTYVRALTSENNKLVGWRWIRIDTSCVCALSRKIGR 269
Q+YVRALT ++ K +GWR+IRIDTSCVC L+ K GR
Sbjct: 212 QSYVRALTMDSKKRIGWRFIRIDTSCVCTLTIKRGR 247
>gi|219842288 brain-derived neurotrophic factor isoform a
preproprotein [Homo sapiens]
Length = 247
Score = 172 bits (435), Expect = 4e-43
Identities = 84/156 (53%), Positives = 110/156 (70%), Gaps = 3/156 (1%)
Query: 116 RVLLSDSTPLEPPPLYLMEDYVGSPVVANRTSRRKRYAEHKSHRGEYSVCDSESLWVT-- 173
RV+LS PLEPP L+L+E+Y AN + R +R+++ + RGE SVCDS S WVT
Sbjct: 93 RVMLSSQVPLEPPLLFLLEEYKNYLDAANMSMRVRRHSD-PARRGELSVCDSISEWVTAA 151
Query: 174 DKSSAIDIRGHQVTVLGEIKTGNSPVKQYFYETRCKEARPVKNGCRGIDDKHWNSQCKTS 233
DK +A+D+ G VTVL ++ +KQYFYET+C K GCRGID +HWNSQC+T+
Sbjct: 152 DKKTAVDMSGGTVTVLEKVPVSKGQLKQYFYETKCNPMGYTKEGCRGIDKRHWNSQCRTT 211
Query: 234 QTYVRALTSENNKLVGWRWIRIDTSCVCALSRKIGR 269
Q+YVRALT ++ K +GWR+IRIDTSCVC L+ K GR
Sbjct: 212 QSYVRALTMDSKKRIGWRFIRIDTSCVCTLTIKRGR 247
>gi|25306264 brain-derived neurotrophic factor isoform a
preproprotein [Homo sapiens]
Length = 247
Score = 172 bits (435), Expect = 4e-43
Identities = 84/156 (53%), Positives = 110/156 (70%), Gaps = 3/156 (1%)
Query: 116 RVLLSDSTPLEPPPLYLMEDYVGSPVVANRTSRRKRYAEHKSHRGEYSVCDSESLWVT-- 173
RV+LS PLEPP L+L+E+Y AN + R +R+++ + RGE SVCDS S WVT
Sbjct: 93 RVMLSSQVPLEPPLLFLLEEYKNYLDAANMSMRVRRHSD-PARRGELSVCDSISEWVTAA 151
Query: 174 DKSSAIDIRGHQVTVLGEIKTGNSPVKQYFYETRCKEARPVKNGCRGIDDKHWNSQCKTS 233
DK +A+D+ G VTVL ++ +KQYFYET+C K GCRGID +HWNSQC+T+
Sbjct: 152 DKKTAVDMSGGTVTVLEKVPVSKGQLKQYFYETKCNPMGYTKEGCRGIDKRHWNSQCRTT 211
Query: 234 QTYVRALTSENNKLVGWRWIRIDTSCVCALSRKIGR 269
Q+YVRALT ++ K +GWR+IRIDTSCVC L+ K GR
Sbjct: 212 QSYVRALTMDSKKRIGWRFIRIDTSCVCTLTIKRGR 247
>gi|25306261 brain-derived neurotrophic factor isoform c
preproprotein [Homo sapiens]
Length = 262
Score = 172 bits (435), Expect = 4e-43
Identities = 84/156 (53%), Positives = 110/156 (70%), Gaps = 3/156 (1%)
Query: 116 RVLLSDSTPLEPPPLYLMEDYVGSPVVANRTSRRKRYAEHKSHRGEYSVCDSESLWVT-- 173
RV+LS PLEPP L+L+E+Y AN + R +R+++ + RGE SVCDS S WVT
Sbjct: 108 RVMLSSQVPLEPPLLFLLEEYKNYLDAANMSMRVRRHSD-PARRGELSVCDSISEWVTAA 166
Query: 174 DKSSAIDIRGHQVTVLGEIKTGNSPVKQYFYETRCKEARPVKNGCRGIDDKHWNSQCKTS 233
DK +A+D+ G VTVL ++ +KQYFYET+C K GCRGID +HWNSQC+T+
Sbjct: 167 DKKTAVDMSGGTVTVLEKVPVSKGQLKQYFYETKCNPMGYTKEGCRGIDKRHWNSQCRTT 226
Query: 234 QTYVRALTSENNKLVGWRWIRIDTSCVCALSRKIGR 269
Q+YVRALT ++ K +GWR+IRIDTSCVC L+ K GR
Sbjct: 227 QSYVRALTMDSKKRIGWRFIRIDTSCVCTLTIKRGR 262
>gi|25306267 brain-derived neurotrophic factor isoform a
preproprotein [Homo sapiens]
Length = 247
Score = 172 bits (435), Expect = 4e-43
Identities = 84/156 (53%), Positives = 110/156 (70%), Gaps = 3/156 (1%)
Query: 116 RVLLSDSTPLEPPPLYLMEDYVGSPVVANRTSRRKRYAEHKSHRGEYSVCDSESLWVT-- 173
RV+LS PLEPP L+L+E+Y AN + R +R+++ + RGE SVCDS S WVT
Sbjct: 93 RVMLSSQVPLEPPLLFLLEEYKNYLDAANMSMRVRRHSD-PARRGELSVCDSISEWVTAA 151
Query: 174 DKSSAIDIRGHQVTVLGEIKTGNSPVKQYFYETRCKEARPVKNGCRGIDDKHWNSQCKTS 233
DK +A+D+ G VTVL ++ +KQYFYET+C K GCRGID +HWNSQC+T+
Sbjct: 152 DKKTAVDMSGGTVTVLEKVPVSKGQLKQYFYETKCNPMGYTKEGCRGIDKRHWNSQCRTT 211
Query: 234 QTYVRALTSENNKLVGWRWIRIDTSCVCALSRKIGR 269
Q+YVRALT ++ K +GWR+IRIDTSCVC L+ K GR
Sbjct: 212 QSYVRALTMDSKKRIGWRFIRIDTSCVCTLTIKRGR 247
>gi|25306257 brain-derived neurotrophic factor isoform a
preproprotein [Homo sapiens]
Length = 247
Score = 172 bits (435), Expect = 4e-43
Identities = 84/156 (53%), Positives = 110/156 (70%), Gaps = 3/156 (1%)
Query: 116 RVLLSDSTPLEPPPLYLMEDYVGSPVVANRTSRRKRYAEHKSHRGEYSVCDSESLWVT-- 173
RV+LS PLEPP L+L+E+Y AN + R +R+++ + RGE SVCDS S WVT
Sbjct: 93 RVMLSSQVPLEPPLLFLLEEYKNYLDAANMSMRVRRHSD-PARRGELSVCDSISEWVTAA 151
Query: 174 DKSSAIDIRGHQVTVLGEIKTGNSPVKQYFYETRCKEARPVKNGCRGIDDKHWNSQCKTS 233
DK +A+D+ G VTVL ++ +KQYFYET+C K GCRGID +HWNSQC+T+
Sbjct: 152 DKKTAVDMSGGTVTVLEKVPVSKGQLKQYFYETKCNPMGYTKEGCRGIDKRHWNSQCRTT 211
Query: 234 QTYVRALTSENNKLVGWRWIRIDTSCVCALSRKIGR 269
Q+YVRALT ++ K +GWR+IRIDTSCVC L+ K GR
Sbjct: 212 QSYVRALTMDSKKRIGWRFIRIDTSCVCTLTIKRGR 247
>gi|25306253 brain-derived neurotrophic factor isoform a
preproprotein [Homo sapiens]
Length = 247
Score = 172 bits (435), Expect = 4e-43
Identities = 84/156 (53%), Positives = 110/156 (70%), Gaps = 3/156 (1%)
Query: 116 RVLLSDSTPLEPPPLYLMEDYVGSPVVANRTSRRKRYAEHKSHRGEYSVCDSESLWVT-- 173
RV+LS PLEPP L+L+E+Y AN + R +R+++ + RGE SVCDS S WVT
Sbjct: 93 RVMLSSQVPLEPPLLFLLEEYKNYLDAANMSMRVRRHSD-PARRGELSVCDSISEWVTAA 151
Query: 174 DKSSAIDIRGHQVTVLGEIKTGNSPVKQYFYETRCKEARPVKNGCRGIDDKHWNSQCKTS 233
DK +A+D+ G VTVL ++ +KQYFYET+C K GCRGID +HWNSQC+T+
Sbjct: 152 DKKTAVDMSGGTVTVLEKVPVSKGQLKQYFYETKCNPMGYTKEGCRGIDKRHWNSQCRTT 211
Query: 234 QTYVRALTSENNKLVGWRWIRIDTSCVCALSRKIGR 269
Q+YVRALT ++ K +GWR+IRIDTSCVC L+ K GR
Sbjct: 212 QSYVRALTMDSKKRIGWRFIRIDTSCVCTLTIKRGR 247
>gi|25306235 brain-derived neurotrophic factor isoform b
preproprotein [Homo sapiens]
Length = 255
Score = 172 bits (435), Expect = 4e-43
Identities = 84/156 (53%), Positives = 110/156 (70%), Gaps = 3/156 (1%)
Query: 116 RVLLSDSTPLEPPPLYLMEDYVGSPVVANRTSRRKRYAEHKSHRGEYSVCDSESLWVT-- 173
RV+LS PLEPP L+L+E+Y AN + R +R+++ + RGE SVCDS S WVT
Sbjct: 101 RVMLSSQVPLEPPLLFLLEEYKNYLDAANMSMRVRRHSD-PARRGELSVCDSISEWVTAA 159
Query: 174 DKSSAIDIRGHQVTVLGEIKTGNSPVKQYFYETRCKEARPVKNGCRGIDDKHWNSQCKTS 233
DK +A+D+ G VTVL ++ +KQYFYET+C K GCRGID +HWNSQC+T+
Sbjct: 160 DKKTAVDMSGGTVTVLEKVPVSKGQLKQYFYETKCNPMGYTKEGCRGIDKRHWNSQCRTT 219
Query: 234 QTYVRALTSENNKLVGWRWIRIDTSCVCALSRKIGR 269
Q+YVRALT ++ K +GWR+IRIDTSCVC L+ K GR
Sbjct: 220 QSYVRALTMDSKKRIGWRFIRIDTSCVCTLTIKRGR 255
>gi|5453808 neurotrophin 5 preproprotein [Homo sapiens]
Length = 210
Score = 167 bits (423), Expect = 9e-42
Identities = 91/201 (45%), Positives = 120/201 (59%), Gaps = 22/201 (10%)
Query: 82 PREPERGGPAKSAFQPVIAMDTELLRQQRRYNSPRVLLSDSTPLEPPPLYLME-----DY 136
P P P S P +A + +LL SPRV+LS P PP L+L+E +
Sbjct: 18 PSVPIESQPPPSTLPPFLAPEWDLL-------SPRVVLSRGAPAGPPLLFLLEAGAFRES 70
Query: 137 VGSPVVANRTSRRKRYAEHKSHRGEYSVCDSESLWVTDKSSAIDIRGHQVTVLGEIKT-G 195
G+P ANR+ R S RGE +VCD+ S WVTD+ +A+D+RG +V VLGE+ G
Sbjct: 71 AGAP--ANRSRRGVSETAPASRRGELAVCDAVSGWVTDRRTAVDLRGREVEVLGEVPAAG 128
Query: 196 NSPVKQYFYETRCKEARPVKNG-------CRGIDDKHWNSQCKTSQTYVRALTSENNKLV 248
SP++QYF+ETRCK + G CRG+D +HW S+CK Q+YVRALT++ V
Sbjct: 129 GSPLRQYFFETRCKADNAEEGGPGAGGGGCRGVDRRHWVSECKAKQSYVRALTADAQGRV 188
Query: 249 GWRWIRIDTSCVCALSRKIGR 269
GWRWIRIDT+CVC L + GR
Sbjct: 189 GWRWIRIDTACVCTLLSRTGR 209
>gi|38787935 BMP-2 inducible kinase isoform a [Homo sapiens]
Length = 1161
Score = 31.6 bits (70), Expect = 0.76
Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 7/116 (6%)
Query: 91 AKSAFQPVIAMDTELLRQQR---RYNSPRVLLSDSTPLEPPPLYLMEDYVGSPVVANRTS 147
+K + ++ + +LLR R R +S + + S S P PP ED GS + +
Sbjct: 633 SKLTEEELLDREFDLLRSNRLEERASSDKNVDSLSAPHNHPP----EDPFGSVPFISHSG 688
Query: 148 RRKRYAEHKSHRGEYSVCDSESLWVTDKSSAIDIRGHQVTVLGEIKTGNSPVKQYF 203
++ AEH S E + T +S G + +V G+++ GN + F
Sbjct: 689 SPEKKAEHSSINQENGTANPIKNGKTSPASKDQRTGKKTSVQGQVQKGNDESESDF 744
>gi|38045890 CUB and Sushi multiple domains 3 isoform 2 [Homo
sapiens]
Length = 3667
Score = 31.6 bits (70), Expect = 0.76
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 126 EPPPLYLMEDYVGSPVVANRTSRRKRYAEHKSHRGE-YSVCDSESLWVTDKSSAIDIRGH 184
EPP ++L + P+++N+ R + +HR +S S +T +S ++ H
Sbjct: 261 EPPTIWLSGMNIPPPIISNKNWLRLHFVTDSNHRYRGFSAPYQGSSTLTHTTSTGELEEH 320
Query: 185 QVTVLGEIKTGNSP 198
T G I ++P
Sbjct: 321 NRTTTGAIAVASTP 334
>gi|38045888 CUB and Sushi multiple domains 3 isoform 1 [Homo
sapiens]
Length = 3707
Score = 31.6 bits (70), Expect = 0.76
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 126 EPPPLYLMEDYVGSPVVANRTSRRKRYAEHKSHRGE-YSVCDSESLWVTDKSSAIDIRGH 184
EPP ++L + P+++N+ R + +HR +S S +T +S ++ H
Sbjct: 301 EPPTIWLSGMNIPPPIISNKNWLRLHFVTDSNHRYRGFSAPYQGSSTLTHTTSTGELEEH 360
Query: 185 QVTVLGEIKTGNSP 198
T G I ++P
Sbjct: 361 NRTTTGAIAVASTP 374
>gi|31581524 cordon-bleu homolog [Homo sapiens]
Length = 1261
Score = 30.0 bits (66), Expect = 2.2
Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 13/78 (16%)
Query: 73 QSTLPKAEAPREPERGGPAKSAFQPVIAMDTELLRQQRRYNSPRVLLSDSTPLEPPPLYL 132
+S + K AP P G P + +++ +++ Q+++ +P + P PPP
Sbjct: 294 KSEMKKRRAPPPPGSGPPVQDKASEKVSLGSQIDLQKKKRRAP----APPPPQPPPP--- 346
Query: 133 MEDYVGSPVVANRTSRRK 150
SP++ NRT ++
Sbjct: 347 ------SPLIPNRTEDKE 358
>gi|46276868 hypothetical protein LOC9710 [Homo sapiens]
Length = 1070
Score = 29.6 bits (65), Expect = 2.9
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 61 LSKQMVDVKENYQSTLPKAEAPREPERGGPAKSAFQPVIAMDTELLRQQR-RYNSPRVLL 119
+++Q + Q +LP PR P+ G QP +A + +QQ+ + + LL
Sbjct: 679 VTEQKAGAMQPQQPSLPVPPPPRAPQAGAHTPLTPQPGLAPQQQSPKQQQPQVQYYQHLL 738
Query: 120 SDSTPLEPPP 129
P +PPP
Sbjct: 739 QPIGPQQPPP 748
>gi|169160953 PREDICTED: hypothetical LOC644006 [Homo sapiens]
Length = 190
Score = 29.3 bits (64), Expect = 3.8
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 7/91 (7%)
Query: 27 RGIQGNNMDQRSLPEDSLNSLIIKLIQA------DILKNKLSKQMVDVKENYQSTL-PKA 79
R Q + S PE SL + I+L++ D+ L +VD+ N + K
Sbjct: 14 RQAQKRTREATSTPEISLEAEPIELVETAGDEIVDLTCESLEPVVVDLTHNDSVVIVDKR 73
Query: 80 EAPREPERGGPAKSAFQPVIAMDTELLRQQR 110
PR R P A +++ D ELL + R
Sbjct: 74 RRPRRNARRLPQDHADSSMVSSDDELLSRDR 104
>gi|40789270 zinc finger protein 573 [Homo sapiens]
Length = 607
Score = 29.3 bits (64), Expect = 3.8
Identities = 31/112 (27%), Positives = 44/112 (39%), Gaps = 30/112 (26%)
Query: 147 SRRKRYAEHKSHRGEYSVCDSESLWVTDKSSAIDIRGHQVTVLGEIKTGNSPVKQYFYET 206
SRR EH G++ E ++ +K RGHQ+TV + TG P YE
Sbjct: 226 SRRSNLVEH----GQFHT--DEKPYICEKCGKAFRRGHQLTVHQRVHTGKKP-----YE- 273
Query: 207 RCKEA-------------RPVKNGCRGIDDKHWNSQCKTSQTYVRALTSENN 245
CKE + + G + + K +CK + T R LT N
Sbjct: 274 -CKECGKGYTTASYFLLHQRIHKGGKPYECK----ECKKTFTLYRNLTRHQN 320
>gi|31657092 ATP binding cassette, sub-family A (ABC1), member 13
[Homo sapiens]
Length = 5058
Score = 28.5 bits (62), Expect = 6.5
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 176 SSAIDIRGH-QVTVLGEIKTGNSPV-KQYFYETRCKEARPVKNGCRGIDDKHWNSQCKTS 233
S+A+ + G + +L E +G P K+Y ++T KE V+ GC + H +C+
Sbjct: 4866 STALALVGKPDILLLDEPSSGMDPCSKRYLWQTIMKE---VREGCAAVLTSHSMEECEAL 4922
Query: 234 QTYVRALTSENNKLVG 249
T + + + + K +G
Sbjct: 4923 CTRLAIMVNGSFKCLG 4938
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.132 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,448,147
Number of Sequences: 37866
Number of extensions: 474387
Number of successful extensions: 1428
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1356
Number of HSP's gapped (non-prelim): 49
length of query: 270
length of database: 18,247,518
effective HSP length: 101
effective length of query: 169
effective length of database: 14,423,052
effective search space: 2437495788
effective search space used: 2437495788
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.