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Search of human proteins with 156627541
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|156627541 hypothetical protein LOC200726 [Homo sapiens]
(181 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|156627541 hypothetical protein LOC200726 [Homo sapiens] 373 e-104
gi|111378393 sodium channel, voltage-gated, type VII, alpha [Hom... 32 0.30
gi|158534077 regulator of G-protein signaling 22 [Homo sapiens] 29 2.5
gi|209863002 MAP-kinase activating death domain-containing prote... 28 3.3
gi|209862998 MAP-kinase activating death domain-containing prote... 28 3.3
gi|209862987 MAP-kinase activating death domain-containing prote... 28 3.3
gi|209862983 MAP-kinase activating death domain-containing prote... 28 3.3
gi|209862979 MAP-kinase activating death domain-containing prote... 28 3.3
gi|209862975 MAP-kinase activating death domain-containing prote... 28 3.3
gi|209862971 MAP-kinase activating death domain-containing prote... 28 3.3
gi|209571517 MAP-kinase activating death domain-containing prote... 28 3.3
gi|239751163 PREDICTED: hypothetical protein [Homo sapiens] 28 3.3
gi|239745648 PREDICTED: similar to predicted protein [Homo sapiens] 28 3.3
gi|156564359 hypothetical protein LOC113278 [Homo sapiens] 28 3.3
gi|209862994 MAP-kinase activating death domain-containing prote... 28 5.6
gi|18860873 MAP-kinase activating death domain-containing protei... 28 5.6
gi|195972894 hypothetical protein LOC254528 [Homo sapiens] 28 5.6
gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 27 7.3
gi|169207592 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 27 7.3
gi|169207014 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 27 7.3
gi|146134388 YLP motif containing 1 [Homo sapiens] 27 9.6
>gi|156627541 hypothetical protein LOC200726 [Homo sapiens]
Length = 181
Score = 373 bits (957), Expect = e-104
Identities = 181/181 (100%), Positives = 181/181 (100%)
Query: 1 MADPGNRGGIHRPLSFTCSLLIVGMCCVSPFFCHSQTDLLALSQADPQCWESSSVLLLEM 60
MADPGNRGGIHRPLSFTCSLLIVGMCCVSPFFCHSQTDLLALSQADPQCWESSSVLLLEM
Sbjct: 1 MADPGNRGGIHRPLSFTCSLLIVGMCCVSPFFCHSQTDLLALSQADPQCWESSSVLLLEM 60
Query: 61 WKPRVSNTVSGFWDFMIYLKSSENLKHGALFWDLAQLFWDIYVDCVLSRNHGLGRRQLVG 120
WKPRVSNTVSGFWDFMIYLKSSENLKHGALFWDLAQLFWDIYVDCVLSRNHGLGRRQLVG
Sbjct: 61 WKPRVSNTVSGFWDFMIYLKSSENLKHGALFWDLAQLFWDIYVDCVLSRNHGLGRRQLVG 120
Query: 121 EEEKISAAQPQHTRSKQGTYSQLLRTSFLKKKELIEDLISMHVRRSGSSVIGKVNLEIKR 180
EEEKISAAQPQHTRSKQGTYSQLLRTSFLKKKELIEDLISMHVRRSGSSVIGKVNLEIKR
Sbjct: 121 EEEKISAAQPQHTRSKQGTYSQLLRTSFLKKKELIEDLISMHVRRSGSSVIGKVNLEIKR 180
Query: 181 K 181
K
Sbjct: 181 K 181
>gi|111378393 sodium channel, voltage-gated, type VII, alpha [Homo
sapiens]
Length = 1682
Score = 32.0 bits (71), Expect = 0.30
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 9/65 (13%)
Query: 25 MCCVSPFFCHSQTDLLALSQADPQCWESSSVLL---------LEMWKPRVSNTVSGFWDF 75
+C +SPF C +T + L Q + SVL+ L W+P + NT+ G + F
Sbjct: 98 LCTLSPFNCIRRTTIKVLVHPFFQLFILISVLIDCVFMSLTNLPKWRPVLENTLLGIYTF 157
Query: 76 MIYLK 80
I +K
Sbjct: 158 EILVK 162
>gi|158534077 regulator of G-protein signaling 22 [Homo sapiens]
Length = 1264
Score = 28.9 bits (63), Expect = 2.5
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 7/43 (16%)
Query: 120 GEEEKISAAQPQHTRSKQGTYSQLLRTSFLKKKELIEDLISMH 162
GEEE++S S Q T SQ L +L+KK+ +++ ++MH
Sbjct: 273 GEEEEVSV-------SLQDTPSQALLRVYLEKKQDVDESLTMH 308
>gi|209863002 MAP-kinase activating death domain-containing protein
isoform j [Homo sapiens]
Length = 1541
Score = 28.5 bits (62), Expect = 3.3
Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 12/108 (11%)
Query: 77 IYLKSSENLKHGALFWDLAQLFWDIYVDCVLSRNHGLGRRQLVGEEEKIS--AAQPQHTR 134
+YL K + WD Q + D ++D V+ G+G Q G +E I + +H R
Sbjct: 1197 VYLYEGLLGKERSTLWDQMQFWEDAFLDAVMLEREGMGMDQ--GPQEMIDRYLSLGEHDR 1254
Query: 135 SK-QGTYSQLLRT------SFLKKKELIEDLISMHVRR-SGSSVIGKV 174
+ + +LL T S++ ++ ++ I VRR G S IG V
Sbjct: 1255 KRLEDDEDRLLATLLHNLISYMLLMKVNKNDIRKKVRRLMGKSHIGLV 1302
>gi|209862998 MAP-kinase activating death domain-containing protein
isoform i [Homo sapiens]
Length = 1544
Score = 28.5 bits (62), Expect = 3.3
Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 12/108 (11%)
Query: 77 IYLKSSENLKHGALFWDLAQLFWDIYVDCVLSRNHGLGRRQLVGEEEKIS--AAQPQHTR 134
+YL K + WD Q + D ++D V+ G+G Q G +E I + +H R
Sbjct: 1200 VYLYEGLLGKERSTLWDQMQFWEDAFLDAVMLEREGMGMDQ--GPQEMIDRYLSLGEHDR 1257
Query: 135 SK-QGTYSQLLRT------SFLKKKELIEDLISMHVRR-SGSSVIGKV 174
+ + +LL T S++ ++ ++ I VRR G S IG V
Sbjct: 1258 KRLEDDEDRLLATLLHNLISYMLLMKVNKNDIRKKVRRLMGKSHIGLV 1305
>gi|209862987 MAP-kinase activating death domain-containing protein
isoform f [Homo sapiens]
Length = 1479
Score = 28.5 bits (62), Expect = 3.3
Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 12/108 (11%)
Query: 77 IYLKSSENLKHGALFWDLAQLFWDIYVDCVLSRNHGLGRRQLVGEEEKIS--AAQPQHTR 134
+YL K + WD Q + D ++D V+ G+G Q G +E I + +H R
Sbjct: 1201 VYLYEGLLGKERSTLWDQMQFWEDAFLDAVMLEREGMGMDQ--GPQEMIDRYLSLGEHDR 1258
Query: 135 SK-QGTYSQLLRT------SFLKKKELIEDLISMHVRR-SGSSVIGKV 174
+ + +LL T S++ ++ ++ I VRR G S IG V
Sbjct: 1259 KRLEDDEDRLLATLLHNLISYMLLMKVNKNDIRKKVRRLMGKSHIGLV 1306
>gi|209862983 MAP-kinase activating death domain-containing protein
isoform e [Homo sapiens]
Length = 1608
Score = 28.5 bits (62), Expect = 3.3
Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 12/108 (11%)
Query: 77 IYLKSSENLKHGALFWDLAQLFWDIYVDCVLSRNHGLGRRQLVGEEEKIS--AAQPQHTR 134
+YL K + WD Q + D ++D V+ G+G Q G +E I + +H R
Sbjct: 1264 VYLYEGLLGKERSTLWDQMQFWEDAFLDAVMLEREGMGMDQ--GPQEMIDRYLSLGEHDR 1321
Query: 135 SK-QGTYSQLLRT------SFLKKKELIEDLISMHVRR-SGSSVIGKV 174
+ + +LL T S++ ++ ++ I VRR G S IG V
Sbjct: 1322 KRLEDDEDRLLATLLHNLISYMLLMKVNKNDIRKKVRRLMGKSHIGLV 1369
>gi|209862979 MAP-kinase activating death domain-containing protein
isoform c [Homo sapiens]
Length = 1545
Score = 28.5 bits (62), Expect = 3.3
Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 12/108 (11%)
Query: 77 IYLKSSENLKHGALFWDLAQLFWDIYVDCVLSRNHGLGRRQLVGEEEKIS--AAQPQHTR 134
+YL K + WD Q + D ++D V+ G+G Q G +E I + +H R
Sbjct: 1201 VYLYEGLLGKERSTLWDQMQFWEDAFLDAVMLEREGMGMDQ--GPQEMIDRYLSLGEHDR 1258
Query: 135 SK-QGTYSQLLRT------SFLKKKELIEDLISMHVRR-SGSSVIGKV 174
+ + +LL T S++ ++ ++ I VRR G S IG V
Sbjct: 1259 KRLEDDEDRLLATLLHNLISYMLLMKVNKNDIRKKVRRLMGKSHIGLV 1306
>gi|209862975 MAP-kinase activating death domain-containing protein
isoform b [Homo sapiens]
Length = 1565
Score = 28.5 bits (62), Expect = 3.3
Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 12/108 (11%)
Query: 77 IYLKSSENLKHGALFWDLAQLFWDIYVDCVLSRNHGLGRRQLVGEEEKIS--AAQPQHTR 134
+YL K + WD Q + D ++D V+ G+G Q G +E I + +H R
Sbjct: 1221 VYLYEGLLGKERSTLWDQMQFWEDAFLDAVMLEREGMGMDQ--GPQEMIDRYLSLGEHDR 1278
Query: 135 SK-QGTYSQLLRT------SFLKKKELIEDLISMHVRR-SGSSVIGKV 174
+ + +LL T S++ ++ ++ I VRR G S IG V
Sbjct: 1279 KRLEDDEDRLLATLLHNLISYMLLMKVNKNDIRKKVRRLMGKSHIGLV 1326
>gi|209862971 MAP-kinase activating death domain-containing protein
isoform a [Homo sapiens]
Length = 1588
Score = 28.5 bits (62), Expect = 3.3
Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 12/108 (11%)
Query: 77 IYLKSSENLKHGALFWDLAQLFWDIYVDCVLSRNHGLGRRQLVGEEEKIS--AAQPQHTR 134
+YL K + WD Q + D ++D V+ G+G Q G +E I + +H R
Sbjct: 1244 VYLYEGLLGKERSTLWDQMQFWEDAFLDAVMLEREGMGMDQ--GPQEMIDRYLSLGEHDR 1301
Query: 135 SK-QGTYSQLLRT------SFLKKKELIEDLISMHVRR-SGSSVIGKV 174
+ + +LL T S++ ++ ++ I VRR G S IG V
Sbjct: 1302 KRLEDDEDRLLATLLHNLISYMLLMKVNKNDIRKKVRRLMGKSHIGLV 1349
>gi|209571517 MAP-kinase activating death domain-containing protein
isoform h [Homo sapiens]
Length = 1587
Score = 28.5 bits (62), Expect = 3.3
Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 12/108 (11%)
Query: 77 IYLKSSENLKHGALFWDLAQLFWDIYVDCVLSRNHGLGRRQLVGEEEKIS--AAQPQHTR 134
+YL K + WD Q + D ++D V+ G+G Q G +E I + +H R
Sbjct: 1243 VYLYEGLLGKERSTLWDQMQFWEDAFLDAVMLEREGMGMDQ--GPQEMIDRYLSLGEHDR 1300
Query: 135 SK-QGTYSQLLRT------SFLKKKELIEDLISMHVRR-SGSSVIGKV 174
+ + +LL T S++ ++ ++ I VRR G S IG V
Sbjct: 1301 KRLEDDEDRLLATLLHNLISYMLLMKVNKNDIRKKVRRLMGKSHIGLV 1348
>gi|239751163 PREDICTED: hypothetical protein [Homo sapiens]
Length = 193
Score = 28.5 bits (62), Expect = 3.3
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 13 PLSFTCSLLIVGMCCVSPFFCHSQTDLLAL 42
PL F C ++G+C CHS T LL L
Sbjct: 79 PLEFLC---LLGLCSPQGILCHSSTQLLNL 105
>gi|239745648 PREDICTED: similar to predicted protein [Homo sapiens]
Length = 193
Score = 28.5 bits (62), Expect = 3.3
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 13 PLSFTCSLLIVGMCCVSPFFCHSQTDLLAL 42
PL F C ++G+C CHS T LL L
Sbjct: 79 PLEFLC---LLGLCSPQGILCHSSTQLLNL 105
>gi|156564359 hypothetical protein LOC113278 [Homo sapiens]
Length = 469
Score = 28.5 bits (62), Expect = 3.3
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 9/41 (21%)
Query: 13 PLSFTCSLLIVGMCCVSPFFCHSQTDLLALSQADPQCWESS 53
PL F L I+ CC+ FF + Q P+CWE+S
Sbjct: 220 PLVFFLLLSIMMACCLVAFF---------VLQRQPRCWEAS 251
>gi|209862994 MAP-kinase activating death domain-containing protein
isoform d [Homo sapiens]
Length = 1647
Score = 27.7 bits (60), Expect = 5.6
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 12/99 (12%)
Query: 86 KHGALFWDLAQLFWDIYVDCVLSRNHGLGRRQLVGEEEKIS--AAQPQHTRSK-QGTYSQ 142
K + WD Q + D ++D V+ G+G Q G +E I + +H R + + +
Sbjct: 1312 KERSTLWDQMQFWEDAFLDAVMLEREGMGMDQ--GPQEMIDRYLSLGEHDRKRLEDDEDR 1369
Query: 143 LLRT------SFLKKKELIEDLISMHVRR-SGSSVIGKV 174
LL T S++ ++ ++ I VRR G S IG V
Sbjct: 1370 LLATLLHNLISYMLLMKVNKNDIRKKVRRLMGKSHIGLV 1408
>gi|18860873 MAP-kinase activating death domain-containing protein
isoform g [Homo sapiens]
Length = 1581
Score = 27.7 bits (60), Expect = 5.6
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 12/99 (12%)
Query: 86 KHGALFWDLAQLFWDIYVDCVLSRNHGLGRRQLVGEEEKIS--AAQPQHTRSK-QGTYSQ 142
K + WD Q + D ++D V+ G+G Q G +E I + +H R + + +
Sbjct: 1312 KERSTLWDQMQFWEDAFLDAVMLEREGMGMDQ--GPQEMIDRYLSLGEHDRKRLEDDEDR 1369
Query: 143 LLRT------SFLKKKELIEDLISMHVRR-SGSSVIGKV 174
LL T S++ ++ ++ I VRR G S IG V
Sbjct: 1370 LLATLLHNLISYMLLMKVNKNDIRKKVRRLMGKSHIGLV 1408
>gi|195972894 hypothetical protein LOC254528 [Homo sapiens]
Length = 442
Score = 27.7 bits (60), Expect = 5.6
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 49 CWESSSVLLLEMWKPR 64
CW++ S+LL + W PR
Sbjct: 210 CWDNESILLAQSWMPR 225
>gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2790
Score = 27.3 bits (59), Expect = 7.3
Identities = 17/55 (30%), Positives = 25/55 (45%)
Query: 5 GNRGGIHRPLSFTCSLLIVGMCCVSPFFCHSQTDLLALSQADPQCWESSSVLLLE 59
GN GG H + + C L +G F H+Q+ + L+ A Q S +L E
Sbjct: 310 GNSGGNHVAVFWLCLLCRLGFSKPQAFMDHTQSHGVKLTPAQYQGLSGSPAVLQE 364
>gi|169207592 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2706
Score = 27.3 bits (59), Expect = 7.3
Identities = 17/55 (30%), Positives = 25/55 (45%)
Query: 5 GNRGGIHRPLSFTCSLLIVGMCCVSPFFCHSQTDLLALSQADPQCWESSSVLLLE 59
GN GG H + + C L +G F H+Q+ + L+ A Q S +L E
Sbjct: 226 GNSGGNHVAVFWLCLLCRLGFSKPQAFMDHTQSHGVKLTPAQYQGLSGSPAVLQE 280
>gi|169207014 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2706
Score = 27.3 bits (59), Expect = 7.3
Identities = 17/55 (30%), Positives = 25/55 (45%)
Query: 5 GNRGGIHRPLSFTCSLLIVGMCCVSPFFCHSQTDLLALSQADPQCWESSSVLLLE 59
GN GG H + + C L +G F H+Q+ + L+ A Q S +L E
Sbjct: 226 GNSGGNHVAVFWLCLLCRLGFSKPQAFMDHTQSHGVKLTPAQYQGLSGSPAVLQE 280
>gi|146134388 YLP motif containing 1 [Homo sapiens]
Length = 2146
Score = 26.9 bits (58), Expect = 9.6
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 60 MWKPRVSNTVSGFWDFMIYLKSSENLKHGALFWDLAQL-FWDIYVDCVLSRNHGLGRRQL 118
M+K GF+ F+I ++ ++H FW A+ +++Y+ + + N G+R +
Sbjct: 1913 MFKTFKKTLDDGFFPFIILDAINDRVRHFDQFWSAAKTKGFEVYLAEMSADNQTCGKRNI 1972
Query: 119 VGEEEK 124
G + K
Sbjct: 1973 HGRKLK 1978
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.136 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,834,078
Number of Sequences: 37866
Number of extensions: 266862
Number of successful extensions: 615
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 607
Number of HSP's gapped (non-prelim): 21
length of query: 181
length of database: 18,247,518
effective HSP length: 96
effective length of query: 85
effective length of database: 14,612,382
effective search space: 1242052470
effective search space used: 1242052470
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.