Search of human proteins with 156105689

Search of human proteins with 156105689

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|156105689 methylmalonyl Coenzyme A mutase precursor [Homo
sapiens]
         (750 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|156105689 methylmalonyl Coenzyme A mutase precursor [Homo sap...  1490   0.0  
gi|194306629 endoplasmic reticulum aminopeptidase 2 [Homo sapiens]     35   0.33 
gi|11641261 endoplasmic reticulum aminopeptidase 2 [Homo sapiens]      35   0.33 
gi|157738667 FYVE and coiled-coil domain containing 1 [Homo sapi...    32   2.2  
gi|29171755 PTPRF interacting protein alpha 2 [Homo sapiens]           32   2.8  
gi|55743106 alpha 3 type VI collagen isoform 5 precursor [Homo s...    31   3.7  
gi|55743098 alpha 3 type VI collagen isoform 1 precursor [Homo s...    31   3.7  
gi|240255535 alpha 3 type VI collagen isoform 4 precursor [Homo ...    31   3.7  
gi|239751241 PREDICTED: TBC1 domain family, member 27 [Homo sapi...    31   4.8  
gi|239745731 PREDICTED: TBC1 domain family, member 27 [Homo sapi...    31   4.8  
gi|29171753 PTPRF interacting protein alpha 1 isoform a [Homo sa...    31   4.8  
gi|4505983 PTPRF interacting protein alpha 1 isoform b [Homo sap...    31   4.8  

>gi|156105689 methylmalonyl Coenzyme A mutase precursor [Homo
           sapiens]
          Length = 750

 Score = 1490 bits (3857), Expect = 0.0
 Identities = 750/750 (100%), Positives = 750/750 (100%)

Query: 1   MLRAKNQLFLLSPHYLRQVKESSGSRLIQQRLLHQQQPLHPEWAALAKKQLKGKNPEDLI 60
           MLRAKNQLFLLSPHYLRQVKESSGSRLIQQRLLHQQQPLHPEWAALAKKQLKGKNPEDLI
Sbjct: 1   MLRAKNQLFLLSPHYLRQVKESSGSRLIQQRLLHQQQPLHPEWAALAKKQLKGKNPEDLI 60

Query: 61  WHTPEGISIKPLYSKRDTMDLPEELPGVKPFTRGPYPTMYTFRPWTIRQYAGFSTVEESN 120
           WHTPEGISIKPLYSKRDTMDLPEELPGVKPFTRGPYPTMYTFRPWTIRQYAGFSTVEESN
Sbjct: 61  WHTPEGISIKPLYSKRDTMDLPEELPGVKPFTRGPYPTMYTFRPWTIRQYAGFSTVEESN 120

Query: 121 KFYKDNIKAGQQGLSVAFDLATHRGYDSDNPRVRGDVGMAGVAIDTVEDTKILFDGIPLE 180
           KFYKDNIKAGQQGLSVAFDLATHRGYDSDNPRVRGDVGMAGVAIDTVEDTKILFDGIPLE
Sbjct: 121 KFYKDNIKAGQQGLSVAFDLATHRGYDSDNPRVRGDVGMAGVAIDTVEDTKILFDGIPLE 180

Query: 181 KMSVSMTMNGAVIPVLANFIVTGEEQGVPKEKLTGTIQNDILKEFMVRNTYIFPPEPSMK 240
           KMSVSMTMNGAVIPVLANFIVTGEEQGVPKEKLTGTIQNDILKEFMVRNTYIFPPEPSMK
Sbjct: 181 KMSVSMTMNGAVIPVLANFIVTGEEQGVPKEKLTGTIQNDILKEFMVRNTYIFPPEPSMK 240

Query: 241 IIADIFEYTAKHMPKFNSISISGYHMQEAGADAILELAYTLADGLEYSRTGLQAGLTIDE 300
           IIADIFEYTAKHMPKFNSISISGYHMQEAGADAILELAYTLADGLEYSRTGLQAGLTIDE
Sbjct: 241 IIADIFEYTAKHMPKFNSISISGYHMQEAGADAILELAYTLADGLEYSRTGLQAGLTIDE 300

Query: 301 FAPRLSFFWGIGMNFYMEIAKMRAGRRLWAHLIEKMFQPKNSKSLLLRAHCQTSGWSLTE 360
           FAPRLSFFWGIGMNFYMEIAKMRAGRRLWAHLIEKMFQPKNSKSLLLRAHCQTSGWSLTE
Sbjct: 301 FAPRLSFFWGIGMNFYMEIAKMRAGRRLWAHLIEKMFQPKNSKSLLLRAHCQTSGWSLTE 360

Query: 361 QDPYNNIVRTAIEAMAAVFGGTQSLHTNSFDEALGLPTVKSARIARNTQIIIQEESGIPK 420
           QDPYNNIVRTAIEAMAAVFGGTQSLHTNSFDEALGLPTVKSARIARNTQIIIQEESGIPK
Sbjct: 361 QDPYNNIVRTAIEAMAAVFGGTQSLHTNSFDEALGLPTVKSARIARNTQIIIQEESGIPK 420

Query: 421 VADPWGGSYMMECLTNDVYDAALKLINEIEEMGGMAKAVAEGIPKLRIEECAARRQARID 480
           VADPWGGSYMMECLTNDVYDAALKLINEIEEMGGMAKAVAEGIPKLRIEECAARRQARID
Sbjct: 421 VADPWGGSYMMECLTNDVYDAALKLINEIEEMGGMAKAVAEGIPKLRIEECAARRQARID 480

Query: 481 SGSEVIVGVNKYQLEKEDAVEVLAIDNTSVRNRQIEKLKKIKSSRDQALAERCLAALTEC 540
           SGSEVIVGVNKYQLEKEDAVEVLAIDNTSVRNRQIEKLKKIKSSRDQALAERCLAALTEC
Sbjct: 481 SGSEVIVGVNKYQLEKEDAVEVLAIDNTSVRNRQIEKLKKIKSSRDQALAERCLAALTEC 540

Query: 541 AASGDGNILALAVDASRARCTVGEITDALKKVFGEHKANDRMVSGAYRQEFGESKEITSA 600
           AASGDGNILALAVDASRARCTVGEITDALKKVFGEHKANDRMVSGAYRQEFGESKEITSA
Sbjct: 541 AASGDGNILALAVDASRARCTVGEITDALKKVFGEHKANDRMVSGAYRQEFGESKEITSA 600

Query: 601 IKRVHKFMEREGRRPRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQTPREVAQQ 660
           IKRVHKFMEREGRRPRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQTPREVAQQ
Sbjct: 601 IKRVHKFMEREGRRPRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQTPREVAQQ 660

Query: 661 AVDADVHAVGISTLAAGHKTLVPELIKELNSLGRPDILVMCGGVIPPQDYEFLFEVGVSN 720
           AVDADVHAVGISTLAAGHKTLVPELIKELNSLGRPDILVMCGGVIPPQDYEFLFEVGVSN
Sbjct: 661 AVDADVHAVGISTLAAGHKTLVPELIKELNSLGRPDILVMCGGVIPPQDYEFLFEVGVSN 720

Query: 721 VFGPGTRIPKAAVQVLDDIEKCLEKKQQSV 750
           VFGPGTRIPKAAVQVLDDIEKCLEKKQQSV
Sbjct: 721 VFGPGTRIPKAAVQVLDDIEKCLEKKQQSV 750


>gi|194306629 endoplasmic reticulum aminopeptidase 2 [Homo sapiens]
          Length = 960

 Score = 34.7 bits (78), Expect = 0.33
 Identities = 26/72 (36%), Positives = 31/72 (43%), Gaps = 17/72 (23%)

Query: 26  RLIQQRLLHQQQPLHPEWAALAKKQLKGKNPEDLIWHTPEGISIKP--------LYSKRD 77
           RL Q+R L       PEW AL ++ L         WH P   S           L SK D
Sbjct: 560 RLQQERFLQGVFQEDPEWRALQERYL---------WHIPLTYSTSSSNVIHRHILKSKTD 610

Query: 78  TMDLPEELPGVK 89
           T+DLPE+   VK
Sbjct: 611 TLDLPEKTSWVK 622


>gi|11641261 endoplasmic reticulum aminopeptidase 2 [Homo sapiens]
          Length = 960

 Score = 34.7 bits (78), Expect = 0.33
 Identities = 26/72 (36%), Positives = 31/72 (43%), Gaps = 17/72 (23%)

Query: 26  RLIQQRLLHQQQPLHPEWAALAKKQLKGKNPEDLIWHTPEGISIKP--------LYSKRD 77
           RL Q+R L       PEW AL ++ L         WH P   S           L SK D
Sbjct: 560 RLQQERFLQGVFQEDPEWRALQERYL---------WHIPLTYSTSSSNVIHRHILKSKTD 610

Query: 78  TMDLPEELPGVK 89
           T+DLPE+   VK
Sbjct: 611 TLDLPEKTSWVK 622


>gi|157738667 FYVE and coiled-coil domain containing 1 [Homo
           sapiens]
          Length = 1478

 Score = 32.0 bits (71), Expect = 2.2
 Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 15/120 (12%)

Query: 495 EKEDAVEVLAIDNTSVRNRQI----EKLKKIKSSRDQA------LAERCLAALTECAASG 544
           E+E A++    D    R  ++    E+L + K S ++A      L E+   A T+ A  G
Sbjct: 850 EREGALQEERADEAQQREEELRALQEELSQAKCSSEEAQLEHAELQEQLHRANTDTAELG 909

Query: 545 DGNILALAVDASRAR----CTVGEITDALKKVFGEHKANDRMVSGAYRQEFGESKEITSA 600
              + AL V+  R      C V E+ DA +    E +  +R V+G  +++    +++ +A
Sbjct: 910 I-QVCALTVEKERVEEALACAVQELQDAKEAASREREGLERQVAGLQQEKESLQEKLKAA 968


>gi|29171755 PTPRF interacting protein alpha 2 [Homo sapiens]
          Length = 1257

 Score = 31.6 bits (70), Expect = 2.8
 Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 9/97 (9%)

Query: 511 RNRQIEKLKKIKSSRDQALAERCLAALTECAASGDGNILALAVDASRARCTVG-----EI 565
           R + +EK ++I   + +    R L    EC  S     L + V   +A+   G     E+
Sbjct: 114 REQLLEKEEEISELKAERNNTRLLLEHLECLVSRHERSLRMTVVKRQAQSPSGVSSEVEV 173

Query: 566 TDALKKVFGEHKANDRMVSGAYRQEFGESKEITSAIK 602
             ALK +F  HKA D  V    R+    S E  SA++
Sbjct: 174 LKALKSLFEHHKALDEKV----RERLRVSLERVSALE 206


>gi|55743106 alpha 3 type VI collagen isoform 5 precursor [Homo
            sapiens]
          Length = 2971

 Score = 31.2 bits (69), Expect = 3.7
 Identities = 44/188 (23%), Positives = 72/188 (38%), Gaps = 18/188 (9%)

Query: 446  INEIEEMGGMAKAVAEGIPKLRIEECAARRQARIDSGSEVIVGVNKYQLEKEDAVEV--- 502
            IN++   GG       G+  LR+        +R+D     I  V       EDA +V   
Sbjct: 1500 INKVVYKGGRHANTKVGLEHLRVNHFVPEAGSRLDQRVPQIAFVITGGKSVEDAQDVSLA 1559

Query: 503  -----LAIDNTSVRNRQIEKLKKIKSSRDQALAERCLAALTECAASGDGNILALAVDASR 557
                 + +    VRN   E++ KI S+   A     +  L+E +      +L    DA  
Sbjct: 1560 LTQRGVKVFAVGVRNIDSEEVGKIASNSATAFRVGNVQELSELSE----QVLETLHDAMH 1615

Query: 558  ARCTVGEITDALKK-----VFGEHKANDRMVSGAYRQEFGESKEITSAIKRVHKFMEREG 612
                 G +TDA K      + G   + D+ V  A +    +   I + I ++H+     G
Sbjct: 1616 ETLCPG-VTDAAKACNLDVILGFDGSRDQNVFVAQKGFESKVDAILNRISQMHRVSCSGG 1674

Query: 613  RRPRLLVA 620
            R P + V+
Sbjct: 1675 RSPTVRVS 1682


>gi|55743098 alpha 3 type VI collagen isoform 1 precursor [Homo
            sapiens]
          Length = 3177

 Score = 31.2 bits (69), Expect = 3.7
 Identities = 44/188 (23%), Positives = 72/188 (38%), Gaps = 18/188 (9%)

Query: 446  INEIEEMGGMAKAVAEGIPKLRIEECAARRQARIDSGSEVIVGVNKYQLEKEDAVEV--- 502
            IN++   GG       G+  LR+        +R+D     I  V       EDA +V   
Sbjct: 1706 INKVVYKGGRHANTKVGLEHLRVNHFVPEAGSRLDQRVPQIAFVITGGKSVEDAQDVSLA 1765

Query: 503  -----LAIDNTSVRNRQIEKLKKIKSSRDQALAERCLAALTECAASGDGNILALAVDASR 557
                 + +    VRN   E++ KI S+   A     +  L+E +      +L    DA  
Sbjct: 1766 LTQRGVKVFAVGVRNIDSEEVGKIASNSATAFRVGNVQELSELSE----QVLETLHDAMH 1821

Query: 558  ARCTVGEITDALKK-----VFGEHKANDRMVSGAYRQEFGESKEITSAIKRVHKFMEREG 612
                 G +TDA K      + G   + D+ V  A +    +   I + I ++H+     G
Sbjct: 1822 ETLCPG-VTDAAKACNLDVILGFDGSRDQNVFVAQKGFESKVDAILNRISQMHRVSCSGG 1880

Query: 613  RRPRLLVA 620
            R P + V+
Sbjct: 1881 RSPTVRVS 1888


>gi|240255535 alpha 3 type VI collagen isoform 4 precursor [Homo
            sapiens]
          Length = 2570

 Score = 31.2 bits (69), Expect = 3.7
 Identities = 44/188 (23%), Positives = 72/188 (38%), Gaps = 18/188 (9%)

Query: 446  INEIEEMGGMAKAVAEGIPKLRIEECAARRQARIDSGSEVIVGVNKYQLEKEDAVEV--- 502
            IN++   GG       G+  LR+        +R+D     I  V       EDA +V   
Sbjct: 1099 INKVVYKGGRHANTKVGLEHLRVNHFVPEAGSRLDQRVPQIAFVITGGKSVEDAQDVSLA 1158

Query: 503  -----LAIDNTSVRNRQIEKLKKIKSSRDQALAERCLAALTECAASGDGNILALAVDASR 557
                 + +    VRN   E++ KI S+   A     +  L+E +      +L    DA  
Sbjct: 1159 LTQRGVKVFAVGVRNIDSEEVGKIASNSATAFRVGNVQELSELSE----QVLETLHDAMH 1214

Query: 558  ARCTVGEITDALKK-----VFGEHKANDRMVSGAYRQEFGESKEITSAIKRVHKFMEREG 612
                 G +TDA K      + G   + D+ V  A +    +   I + I ++H+     G
Sbjct: 1215 ETLCPG-VTDAAKACNLDVILGFDGSRDQNVFVAQKGFESKVDAILNRISQMHRVSCSGG 1273

Query: 613  RRPRLLVA 620
            R P + V+
Sbjct: 1274 RSPTVRVS 1281


>gi|239751241 PREDICTED: TBC1 domain family, member 27 [Homo
           sapiens]
          Length = 617

 Score = 30.8 bits (68), Expect = 4.8
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 5/75 (6%)

Query: 297 TIDEFAPRLSFFWGIGMNFYMEIAKMRAGRRLWAHLIEKMFQPKNSKSLLLRAHCQTSGW 356
           T+ EF  RLS  W +  N     + +R  +     L +K +   + +SLL  AHC T  W
Sbjct: 311 TVWEFQERLSQSWALEDN-----SVLRNLQTSMKELTKKHWDLPSPESLLQNAHCCTIAW 365

Query: 357 SLTEQDPYNNIVRTA 371
            L  +   N+    A
Sbjct: 366 GLQSKAGKNSCTSRA 380


>gi|239745731 PREDICTED: TBC1 domain family, member 27 [Homo
           sapiens]
          Length = 339

 Score = 30.8 bits (68), Expect = 4.8
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 5/75 (6%)

Query: 297 TIDEFAPRLSFFWGIGMNFYMEIAKMRAGRRLWAHLIEKMFQPKNSKSLLLRAHCQTSGW 356
           T+ EF  RLS  W +  N     + +R  +     L +K +   + +SLL  AHC T  W
Sbjct: 181 TVWEFQERLSQSWALEDN-----SVLRNLQTSMKELTKKHWDLPSPESLLQNAHCCTIAW 235

Query: 357 SLTEQDPYNNIVRTA 371
            L  +   N+    A
Sbjct: 236 GLQSKAGKNSCTSRA 250


>gi|29171753 PTPRF interacting protein alpha 1 isoform a [Homo
           sapiens]
          Length = 1185

 Score = 30.8 bits (68), Expect = 4.8
 Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 8/96 (8%)

Query: 516 EKLKKIKSSRDQALAERCLAALTECAASGDGNILALAVDASRARCTVG-----EITDALK 570
           E++ ++K+ R+     R L    EC  S     L + V   +A+   G     E+  ALK
Sbjct: 109 EEIAELKAERNNT---RLLLEHLECLVSRHERSLRMTVVKRQAQSPAGVSSEVEVLKALK 165

Query: 571 KVFGEHKANDRMVSGAYRQEFGESKEITSAIKRVHK 606
            +F  HKA D  V    R        +   +   HK
Sbjct: 166 SLFEHHKALDEKVRERLRVALERCSLLEEELGATHK 201


>gi|4505983 PTPRF interacting protein alpha 1 isoform b [Homo
           sapiens]
          Length = 1202

 Score = 30.8 bits (68), Expect = 4.8
 Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 8/96 (8%)

Query: 516 EKLKKIKSSRDQALAERCLAALTECAASGDGNILALAVDASRARCTVG-----EITDALK 570
           E++ ++K+ R+     R L    EC  S     L + V   +A+   G     E+  ALK
Sbjct: 109 EEIAELKAERNNT---RLLLEHLECLVSRHERSLRMTVVKRQAQSPAGVSSEVEVLKALK 165

Query: 571 KVFGEHKANDRMVSGAYRQEFGESKEITSAIKRVHK 606
            +F  HKA D  V    R        +   +   HK
Sbjct: 166 SLFEHHKALDEKVRERLRVALERCSLLEEELGATHK 201


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.135    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,750,052
Number of Sequences: 37866
Number of extensions: 1181503
Number of successful extensions: 2564
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2558
Number of HSP's gapped (non-prelim): 15
length of query: 750
length of database: 18,247,518
effective HSP length: 110
effective length of query: 640
effective length of database: 14,082,258
effective search space: 9012645120
effective search space used: 9012645120
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.