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Search of human proteins with 154759247
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|154759247 testis/prostate/placenta-expressed protein isoform
1 [Homo sapiens]
(298 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|154759247 testis/prostate/placenta-expressed protein isoform ... 639 0.0
gi|154759245 testis/prostate/placenta-expressed protein isoform ... 558 e-159
gi|194353966 dynein, axonemal, heavy polypeptide 6 [Homo sapiens] 30 2.6
gi|223633944 hypothetical protein LOC389762 [Homo sapiens] 30 3.4
gi|223671858 hypothetical protein LOC389761 [Homo sapiens] 30 3.4
gi|120587023 down-regulated in metastasis [Homo sapiens] 29 5.7
gi|89036565 PREDICTED: similar to Temporarily Assigned Gene name... 29 5.7
gi|32698686 N-acetylgalactosaminyltransferase 5 [Homo sapiens] 29 5.7
gi|14790170 tumor necrosis factor receptor superfamily, member 6... 28 9.8
gi|4507585 tumor necrosis factor receptor superfamily, member 6b... 28 9.8
gi|78499633 phospholipase C, eta 2 [Homo sapiens] 28 9.8
gi|169167062 PREDICTED: hypothetical protein LOC285556 [Homo sap... 28 9.8
gi|113416182 PREDICTED: hypothetical protein LOC285556 [Homo sap... 28 9.8
gi|113415686 PREDICTED: hypothetical protein LOC285556 [Homo sap... 28 9.8
>gi|154759247 testis/prostate/placenta-expressed protein isoform 1
[Homo sapiens]
Length = 298
Score = 639 bits (1647), Expect = 0.0
Identities = 298/298 (100%), Positives = 298/298 (100%)
Query: 1 MGIVCAQCSFILLLSIIRARPPPFLFCPLSSQRTESPYKPVHLGLGPTDKVAAIAMARII 60
MGIVCAQCSFILLLSIIRARPPPFLFCPLSSQRTESPYKPVHLGLGPTDKVAAIAMARII
Sbjct: 1 MGIVCAQCSFILLLSIIRARPPPFLFCPLSSQRTESPYKPVHLGLGPTDKVAAIAMARII 60
Query: 61 DLVPWDDGSTHVYASPAILLPMERQRNQLAGVKQQLYHPALPTLRHMDRDTVKACLPDEH 120
DLVPWDDGSTHVYASPAILLPMERQRNQLAGVKQQLYHPALPTLRHMDRDTVKACLPDEH
Sbjct: 61 DLVPWDDGSTHVYASPAILLPMERQRNQLAGVKQQLYHPALPTLRHMDRDTVKACLPDEH 120
Query: 121 CQSTTYCRKDEFDNAHFTLLGVPNKPLQCLDITATGQKLRNRYHEGKLAPIAPGINRVDW 180
CQSTTYCRKDEFDNAHFTLLGVPNKPLQCLDITATGQKLRNRYHEGKLAPIAPGINRVDW
Sbjct: 121 CQSTTYCRKDEFDNAHFTLLGVPNKPLQCLDITATGQKLRNRYHEGKLAPIAPGINRVDW 180
Query: 181 PCFTRAIEDWSHFVSSAGEFKLPCLRKRAEGLSGYAVRYLKPDVTQTWRQEALCGAWAGR 240
PCFTRAIEDWSHFVSSAGEFKLPCLRKRAEGLSGYAVRYLKPDVTQTWRQEALCGAWAGR
Sbjct: 181 PCFTRAIEDWSHFVSSAGEFKLPCLRKRAEGLSGYAVRYLKPDVTQTWRQEALCGAWAGR 240
Query: 241 PCSPDSPRPYPCCPPQYCLSQNPSLDRYGQKPLPFDSLNTFRSFGSSYSRVNYLTPWH 298
PCSPDSPRPYPCCPPQYCLSQNPSLDRYGQKPLPFDSLNTFRSFGSSYSRVNYLTPWH
Sbjct: 241 PCSPDSPRPYPCCPPQYCLSQNPSLDRYGQKPLPFDSLNTFRSFGSSYSRVNYLTPWH 298
>gi|154759245 testis/prostate/placenta-expressed protein isoform 2
[Homo sapiens]
Length = 271
Score = 558 bits (1439), Expect = e-159
Identities = 271/298 (90%), Positives = 271/298 (90%), Gaps = 27/298 (9%)
Query: 1 MGIVCAQCSFILLLSIIRARPPPFLFCPLSSQRTESPYKPVHLGLGPTDKVAAIAMARII 60
MGIVCAQCSFILLLSIIRARPPPFLFCPLSSQRTESPYKPVHLGLGPTDKVAAIAMARII
Sbjct: 1 MGIVCAQCSFILLLSIIRARPPPFLFCPLSSQRTESPYKPVHLGLGPTDKVAAIAMARII 60
Query: 61 DLVPWDDGSTHVYASPAILLPMERQRNQLAGVKQQLYHPALPTLRHMDRDTVKACLPDEH 120
DLVPWDDGSTHVYASPAILLPMERQRNQLAGVKQQLYHPALPTLRHMDRDTVKACLPDEH
Sbjct: 61 DLVPWDDGSTHVYASPAILLPMERQRNQLAGVKQQLYHPALPTLRHMDRDTVKACLPDEH 120
Query: 121 CQSTTYCRKDEFDNAHFTLLGVPNKPLQCLDITATGQKLRNRYHEGKLAPIAPGINRVDW 180
CQSTTYCRKDEFDNAHFTLLGVPNKPLQCLDITATGQKLRNRYHEGKLAPIAPGINRVDW
Sbjct: 121 CQSTTYCRKDEFDNAHFTLLGVPNKPLQCLDITATGQKLRNRYHEGKLAPIAPGINRVDW 180
Query: 181 PCFTRAIEDWSHFVSSAGEFKLPCLRKRAEGLSGYAVRYLKPDVTQTWRQEALCGAWAGR 240
PCFTRAIEDWSHFVSSAGEFKLPCLRKRAEGLSGYAVRYLKPDVTQTWR
Sbjct: 181 PCFTRAIEDWSHFVSSAGEFKLPCLRKRAEGLSGYAVRYLKPDVTQTWR----------- 229
Query: 241 PCSPDSPRPYPCCPPQYCLSQNPSLDRYGQKPLPFDSLNTFRSFGSSYSRVNYLTPWH 298
YCLSQNPSLDRYGQKPLPFDSLNTFRSFGSSYSRVNYLTPWH
Sbjct: 230 ----------------YCLSQNPSLDRYGQKPLPFDSLNTFRSFGSSYSRVNYLTPWH 271
>gi|194353966 dynein, axonemal, heavy polypeptide 6 [Homo sapiens]
Length = 4158
Score = 30.0 bits (66), Expect = 2.6
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 263 PSLDRYGQKPLPFDSLNTFRSFGSSYSR 290
P LDRYG +P P + L ++ FG Y R
Sbjct: 2169 PRLDRYGSQP-PIELLRQYQDFGGFYDR 2195
>gi|223633944 hypothetical protein LOC389762 [Homo sapiens]
Length = 917
Score = 29.6 bits (65), Expect = 3.4
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 243 SPDSPRPYPCCPPQYCLSQNPSLDRYGQKPLPFDSLNTFRSFGSS 287
SP P+P PP + PSL +P SLNT SFGS+
Sbjct: 235 SPPQQLPFPLLPPHHIERVEPSL-----QPEASLSLNTIFSFGST 274
>gi|223671858 hypothetical protein LOC389761 [Homo sapiens]
Length = 917
Score = 29.6 bits (65), Expect = 3.4
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 243 SPDSPRPYPCCPPQYCLSQNPSLDRYGQKPLPFDSLNTFRSFGSS 287
SP P+P PP + PSL +P SLNT SFGS+
Sbjct: 235 SPPQQLPFPLLPPHHIERVEPSL-----QPEASLSLNTIFSFGST 274
>gi|120587023 down-regulated in metastasis [Homo sapiens]
Length = 2785
Score = 28.9 bits (63), Expect = 5.7
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 243 SPDSPRPYPCCPPQYCLSQNPSLDRYGQK 271
+P +P P P PPQ CL P+ R GQK
Sbjct: 2043 NPVAPAPDPRLPPQSCLLLPPTPVRGGQK 2071
>gi|89036565 PREDICTED: similar to Temporarily Assigned Gene name
family member (tag-184) [Homo sapiens]
Length = 2785
Score = 28.9 bits (63), Expect = 5.7
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 243 SPDSPRPYPCCPPQYCLSQNPSLDRYGQK 271
+P +P P P PPQ CL P+ R GQK
Sbjct: 2043 NPVAPAPDPRLPPQSCLLLPPTPVRGGQK 2071
>gi|32698686 N-acetylgalactosaminyltransferase 5 [Homo sapiens]
Length = 940
Score = 28.9 bits (63), Expect = 5.7
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 65 WDDGSTHVYASPAILLPMERQRNQLAGVKQQLYHPALPTLRHMDRDTVKACLPDE 119
W +G+ +VY S I + + + AG +QL H LPT +V C DE
Sbjct: 459 WKEGNFNVYLSDLIPVDRAIEDTRPAGCAEQLVHNNLPT------TSVIMCFVDE 507
>gi|14790170 tumor necrosis factor receptor superfamily, member 6b
[Homo sapiens]
Length = 300
Score = 28.1 bits (61), Expect = 9.8
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 10/52 (19%)
Query: 216 AVRYLKPDVTQTWR-----QEALC-----GAWAGRPCSPDSPRPYPCCPPQY 257
AVR + T WR + +C G + RPC DSP CPP++
Sbjct: 26 AVRGVAETPTYPWRDAETGERLVCAQCPPGTFVQRPCRRDSPTTCGPCPPRH 77
>gi|4507585 tumor necrosis factor receptor superfamily, member 6b
[Homo sapiens]
Length = 300
Score = 28.1 bits (61), Expect = 9.8
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 10/52 (19%)
Query: 216 AVRYLKPDVTQTWR-----QEALC-----GAWAGRPCSPDSPRPYPCCPPQY 257
AVR + T WR + +C G + RPC DSP CPP++
Sbjct: 26 AVRGVAETPTYPWRDAETGERLVCAQCPPGTFVQRPCRRDSPTTCGPCPPRH 77
>gi|78499633 phospholipase C, eta 2 [Homo sapiens]
Length = 1416
Score = 28.1 bits (61), Expect = 9.8
Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 11/74 (14%)
Query: 230 QEALCGAWAGRPCSPDSPRPY------PCCPPQYCLSQNPSLDRYGQKPLPFDSLNTFRS 283
+E L GA GR PRP+ P PP NP+L GQ+P D L RS
Sbjct: 1169 RENLAGAHMGRL----PPRPHSASAARPDLPPVTKSKSNPNLRATGQRPPIPDELQP-RS 1223
Query: 284 FGSSYSRVNYLTPW 297
+ + + PW
Sbjct: 1224 LAPRMAGLPFRPPW 1237
>gi|169167062 PREDICTED: hypothetical protein LOC285556 [Homo sapiens]
Length = 1826
Score = 28.1 bits (61), Expect = 9.8
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 244 PDSPRPYPCCPPQYCLSQNPSLDRYGQKPLPF 275
PD+PR PP ++P Y Q PLPF
Sbjct: 1569 PDNPRETVAAPPGPQSPEHPPTTIYHQPPLPF 1600
>gi|113416182 PREDICTED: hypothetical protein LOC285556 [Homo sapiens]
Length = 1826
Score = 28.1 bits (61), Expect = 9.8
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 244 PDSPRPYPCCPPQYCLSQNPSLDRYGQKPLPF 275
PD+PR PP ++P Y Q PLPF
Sbjct: 1569 PDNPRETVAAPPGPQSPEHPPTTIYHQPPLPF 1600
>gi|113415686 PREDICTED: hypothetical protein LOC285556 [Homo sapiens]
Length = 1826
Score = 28.1 bits (61), Expect = 9.8
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 244 PDSPRPYPCCPPQYCLSQNPSLDRYGQKPLPF 275
PD+PR PP ++P Y Q PLPF
Sbjct: 1569 PDNPRETVAAPPGPQSPEHPPTTIYHQPPLPF 1600
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.138 0.463
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,655,541
Number of Sequences: 37866
Number of extensions: 687572
Number of successful extensions: 1810
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1801
Number of HSP's gapped (non-prelim): 14
length of query: 298
length of database: 18,247,518
effective HSP length: 102
effective length of query: 196
effective length of database: 14,385,186
effective search space: 2819496456
effective search space used: 2819496456
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.