Search of human proteins with 154736713

Search of human proteins with 154736713

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|154736713 KDEL receptor 2 isoform 2 [Homo sapiens]
         (186 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|154736713 KDEL receptor 2 isoform 2 [Homo sapiens]                 375   e-104
gi|5803050 KDEL receptor 2 isoform 1 [Homo sapiens]                   234   2e-62
gi|5803048 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein ...   198   2e-51
gi|8051611 KDEL receptor 3 isoform b [Homo sapiens]                   171   4e-43
gi|6857802 KDEL receptor 3 isoform a [Homo sapiens]                   171   4e-43
gi|89062505 PREDICTED: similar to KDEL receptor [Homo sapiens]        108   3e-24
gi|9966791 fascin 3 [Homo sapiens]                                     32   0.41 
gi|6715600 golgi autoantigen, golgin subfamily a, 4 [Homo sapiens]     30   1.6  
gi|190343023 ATP-binding cassette, sub-family C, member 6 isofor...    29   2.7  
gi|239756495 PREDICTED: hypothetical protein [Homo sapiens]            29   2.7  
gi|217416356 transmembrane protein 194B [Homo sapiens]                 28   4.6  

>gi|154736713 KDEL receptor 2 isoform 2 [Homo sapiens]
          Length = 186

 Score =  375 bits (963), Expect = e-104
 Identities = 186/186 (100%), Positives = 186/186 (100%)

Query: 1   MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYN 60
           MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYN
Sbjct: 1   MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYN 60

Query: 61  TSMKVIYLACSYATVYLIYLKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLEYSR 120
           TSMKVIYLACSYATVYLIYLKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLEYSR
Sbjct: 61  TSMKVIYLACSYATVYLIYLKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLEYSR 120

Query: 121 ERSSVCQHKCQRPSPASVLQGARTEFLPQQRHKMLDTENQKLNSFVADSHQWLCKNAEEK 180
           ERSSVCQHKCQRPSPASVLQGARTEFLPQQRHKMLDTENQKLNSFVADSHQWLCKNAEEK
Sbjct: 121 ERSSVCQHKCQRPSPASVLQGARTEFLPQQRHKMLDTENQKLNSFVADSHQWLCKNAEEK 180

Query: 181 SQKVSV 186
           SQKVSV
Sbjct: 181 SQKVSV 186


>gi|5803050 KDEL receptor 2 isoform 1 [Homo sapiens]
          Length = 212

 Score =  234 bits (598), Expect = 2e-62
 Identities = 117/117 (100%), Positives = 117/117 (100%)

Query: 1   MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYN 60
           MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYN
Sbjct: 1   MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYN 60

Query: 61  TSMKVIYLACSYATVYLIYLKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLE 117
           TSMKVIYLACSYATVYLIYLKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLE
Sbjct: 61  TSMKVIYLACSYATVYLIYLKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLE 117


>gi|5803048 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein
           retention receptor 1 [Homo sapiens]
          Length = 212

 Score =  198 bits (504), Expect = 2e-51
 Identities = 93/117 (79%), Positives = 107/117 (91%)

Query: 1   MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYN 60
           MN+FR  GDLSHL AI++LLLKIWK+RSCAGISGKSQ+LFA+VFT RYLDLFT++ISLYN
Sbjct: 1   MNLFRFLGDLSHLLAIILLLLKIWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN 60

Query: 61  TSMKVIYLACSYATVYLIYLKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLE 117
           T MKV+Y+ACS+ TV+LIY KFKATYDGNHDTFRVEFLVVP   L+FLVNHDF+PLE
Sbjct: 61  TCMKVVYIACSFTTVWLIYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLE 117


>gi|8051611 KDEL receptor 3 isoform b [Homo sapiens]
          Length = 220

 Score =  171 bits (432), Expect = 4e-43
 Identities = 79/117 (67%), Positives = 101/117 (86%)

Query: 1   MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYN 60
           MN+FR+ GDLSHL A+++LL KIW+++ C GISGKSQ+LFALVFTTRYLDLFT+FIS+YN
Sbjct: 1   MNVFRILGDLSHLLAMILLLGKIWRSKCCKGISGKSQILFALVFTTRYLDLFTNFISIYN 60

Query: 61  TSMKVIYLACSYATVYLIYLKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLE 117
           T MKV++L C+Y TVY+IY KF+ T+D  +DTFR+EFL+VPV GLSFL N+ F+ LE
Sbjct: 61  TVMKVVFLLCAYVTVYMIYGKFRKTFDSENDTFRLEFLLVPVIGLSFLENYSFTLLE 117


>gi|6857802 KDEL receptor 3 isoform a [Homo sapiens]
          Length = 214

 Score =  171 bits (432), Expect = 4e-43
 Identities = 79/117 (67%), Positives = 101/117 (86%)

Query: 1   MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYN 60
           MN+FR+ GDLSHL A+++LL KIW+++ C GISGKSQ+LFALVFTTRYLDLFT+FIS+YN
Sbjct: 1   MNVFRILGDLSHLLAMILLLGKIWRSKCCKGISGKSQILFALVFTTRYLDLFTNFISIYN 60

Query: 61  TSMKVIYLACSYATVYLIYLKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLE 117
           T MKV++L C+Y TVY+IY KF+ T+D  +DTFR+EFL+VPV GLSFL N+ F+ LE
Sbjct: 61  TVMKVVFLLCAYVTVYMIYGKFRKTFDSENDTFRLEFLLVPVIGLSFLENYSFTLLE 117


>gi|89062505 PREDICTED: similar to KDEL receptor [Homo sapiens]
          Length = 219

 Score =  108 bits (269), Expect = 3e-24
 Identities = 56/110 (50%), Positives = 78/110 (70%), Gaps = 2/110 (1%)

Query: 1   MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYN 60
           M + R+ GD+ HL+AI+ILL K+ + RS AGIS KS  LFA+VF TRY+D+  SFI +YN
Sbjct: 1   MALVRVVGDMLHLSAILILLSKMLRQRSAAGISLKSMELFAIVFCTRYIDVLFSFIGIYN 60

Query: 61  TSMKVIYLACSYATVYLIYLK--FKATYDGNHDTFRVEFLVVPVGGLSFL 108
           T+MK+ ++A +    YL+  K  +KATYD  +DTFR+ +L+VP   LS L
Sbjct: 61  TTMKIFFIASTLHICYLMKFKSPWKATYDRENDTFRIRYLIVPCVVLSIL 110


>gi|9966791 fascin 3 [Homo sapiens]
          Length = 498

 Score = 31.6 bits (70), Expect = 0.41
 Identities = 16/53 (30%), Positives = 24/53 (45%)

Query: 122 RSSVCQHKCQRPSPASVLQGARTEFLPQQRHKMLDTENQKLNSFVADSHQWLC 174
           R S+ Q +C   SP   L+ A   +L Q+RH+ +  +   L S       W C
Sbjct: 293 RMSLFQFECDSESPTVQLRSANGYYLSQRRHRAVMADGHPLESDTFFRMHWNC 345


>gi|6715600 golgi autoantigen, golgin subfamily a, 4 [Homo sapiens]
          Length = 2230

 Score = 29.6 bits (65), Expect = 1.6
 Identities = 20/79 (25%), Positives = 33/79 (41%)

Query: 108  LVNHDFSPLEYSRERSSVCQHKCQRPSPASVLQGARTEFLPQQRHKMLDTENQKLNSFVA 167
            L+N   S       R S CQH+  +   A +++      L  Q  ++ + +N    SF  
Sbjct: 1235 LINISSSKTNAILSRISHCQHRTTKVKEALLIKTCTVSELEAQLRQLTEEQNTLNISFQQ 1294

Query: 168  DSHQWLCKNAEEKSQKVSV 186
             +HQ   K  + KS K  +
Sbjct: 1295 ATHQLEEKENQIKSMKADI 1313


>gi|190343023 ATP-binding cassette, sub-family C, member 6 isoform 1
            [Homo sapiens]
          Length = 1503

 Score = 28.9 bits (63), Expect = 2.7
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 119  SRERSSVCQHKCQRPSPASVLQGARTE--FLPQQRHKMLDTENQKLNSFVADSHQWLCKN 176
            S   SSVC H  +    ++V++  RT+  F+ Q   ++ +++       VAD  +WL  N
Sbjct: 1117 SASYSSVCSHMAETFQGSTVVRAFRTQAPFVAQNNARVDESQRISFPRLVAD--RWLAAN 1174

Query: 177  AE 178
             E
Sbjct: 1175 VE 1176


>gi|239756495 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 1312

 Score = 28.9 bits (63), Expect = 2.7
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 119 SRERSSVCQHKCQRPSPASVLQGARTE--FLPQQRHKMLDTENQKLNSFVADSHQWLCKN 176
           S   SSVC H  +    ++V++  RT+  F+ Q   ++ +++       VAD  +WL  N
Sbjct: 926 SASYSSVCSHMAETFQGSTVVRAFRTQAPFVAQNNARVDESQRISFPRLVAD--RWLAAN 983

Query: 177 AE 178
            E
Sbjct: 984 VE 985


>gi|217416356 transmembrane protein 194B [Homo sapiens]
          Length = 417

 Score = 28.1 bits (61), Expect = 4.6
 Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 9/87 (10%)

Query: 38  LLFALVFTTRYLDLFTSFISLYNTSMKVIYLACSYATVYLI-YLKFKATYDGNHDTFRVE 96
           L+F L+   R++  +++F +L         + C +A+VY++  L     +    +   V 
Sbjct: 191 LVFVLLLVKRFIPKYSTFWALM--------VGCWFASVYIVCQLMEDLKWLWYENRIYVL 242

Query: 97  FLVVPVGGLSFLVNHDFSPLEYSRERS 123
             V+ VG  SF+V +   PL   R RS
Sbjct: 243 GYVLIVGFFSFVVCYKHGPLADDRSRS 269


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.324    0.135    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,547,173
Number of Sequences: 37866
Number of extensions: 263682
Number of successful extensions: 890
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 881
Number of HSP's gapped (non-prelim): 11
length of query: 186
length of database: 18,247,518
effective HSP length: 96
effective length of query: 90
effective length of database: 14,612,382
effective search space: 1315114380
effective search space used: 1315114380
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.