BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|154146218 EFR3 homolog A [Homo sapiens] (821 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|154146218 EFR3 homolog A [Homo sapiens] 1626 0.0 gi|190684710 EFR3 homolog B [Homo sapiens] 1026 0.0 gi|16554449 zonadhesin isoform 3 [Homo sapiens] 33 0.82 gi|27881494 zonadhesin isoform 6 [Homo sapiens] 33 0.82 gi|20357556 cortactin isoform b [Homo sapiens] 33 1.1 gi|189409124 armadillo repeat containing 3 [Homo sapiens] 33 1.4 gi|20357552 cortactin isoform a [Homo sapiens] 33 1.4 gi|5902122 spectrin, beta, non-erythrocytic 2 [Homo sapiens] 30 7.0 gi|21264592 ArfGAP with RhoGAP domain, ankyrin repeat and PH dom... 30 7.0 gi|38454322 adhesion molecule with Ig-like domain 3 [Homo sapiens] 30 9.1 gi|116875765 tight junction protein 1 isoform b [Homo sapiens] 30 9.1 gi|116875767 tight junction protein 1 isoform a [Homo sapiens] 30 9.1 >gi|154146218 EFR3 homolog A [Homo sapiens] Length = 821 Score = 1626 bits (4210), Expect = 0.0 Identities = 821/821 (100%), Positives = 821/821 (100%) Query: 1 MPTRVCCCCSALRPRYKRLVDNIFPEDPKDGLVKTDMEKLTFYAVSAPEKLDRIGSYLAE 60 MPTRVCCCCSALRPRYKRLVDNIFPEDPKDGLVKTDMEKLTFYAVSAPEKLDRIGSYLAE Sbjct: 1 MPTRVCCCCSALRPRYKRLVDNIFPEDPKDGLVKTDMEKLTFYAVSAPEKLDRIGSYLAE 60 Query: 61 RLSRDVVRHRSGYVLIAMEALDQLLMACHSQSIKPFVESFLHMVAKLLESGEPKLQVLGT 120 RLSRDVVRHRSGYVLIAMEALDQLLMACHSQSIKPFVESFLHMVAKLLESGEPKLQVLGT Sbjct: 61 RLSRDVVRHRSGYVLIAMEALDQLLMACHSQSIKPFVESFLHMVAKLLESGEPKLQVLGT 120 Query: 121 NSFVKFANIEEDTPSYHRRYDFFVSRFSAMCHSCHSDPEIRTEIRIAGIRGIQGVVRKTV 180 NSFVKFANIEEDTPSYHRRYDFFVSRFSAMCHSCHSDPEIRTEIRIAGIRGIQGVVRKTV Sbjct: 121 NSFVKFANIEEDTPSYHRRYDFFVSRFSAMCHSCHSDPEIRTEIRIAGIRGIQGVVRKTV 180 Query: 181 NDELRATIWEPQHMDKIVPSLLFNMQKIEEVDSRIGPPSSPSATDKEENPAVLAENCFRE 240 NDELRATIWEPQHMDKIVPSLLFNMQKIEEVDSRIGPPSSPSATDKEENPAVLAENCFRE Sbjct: 181 NDELRATIWEPQHMDKIVPSLLFNMQKIEEVDSRIGPPSSPSATDKEENPAVLAENCFRE 240 Query: 241 LLGRATFGNMNNAVRPVFAHLDHHKLWDPNEFAVHCFKIIMYSIQAQYSHHVIQEILGHL 300 LLGRATFGNMNNAVRPVFAHLDHHKLWDPNEFAVHCFKIIMYSIQAQYSHHVIQEILGHL Sbjct: 241 LLGRATFGNMNNAVRPVFAHLDHHKLWDPNEFAVHCFKIIMYSIQAQYSHHVIQEILGHL 300 Query: 301 DARKKDAPRVRAGIIQVLLEAVAIAAKGSIGPTVLEVFNTLLKHLRLSVEFEANDLQGGS 360 DARKKDAPRVRAGIIQVLLEAVAIAAKGSIGPTVLEVFNTLLKHLRLSVEFEANDLQGGS Sbjct: 301 DARKKDAPRVRAGIIQVLLEAVAIAAKGSIGPTVLEVFNTLLKHLRLSVEFEANDLQGGS 360 Query: 361 VGSVNLNTSSKDNDEKIVQNAIIQTIGFFGSNLPDYQRSEIMMFIMGKVPVFGTSTHTLD 420 VGSVNLNTSSKDNDEKIVQNAIIQTIGFFGSNLPDYQRSEIMMFIMGKVPVFGTSTHTLD Sbjct: 361 VGSVNLNTSSKDNDEKIVQNAIIQTIGFFGSNLPDYQRSEIMMFIMGKVPVFGTSTHTLD 420 Query: 421 ISQLGDLGTRRIQIMLLRSLLMVTSGYKAKTIVTALPGSFLDPLLSPSLMEDYELRQLVL 480 ISQLGDLGTRRIQIMLLRSLLMVTSGYKAKTIVTALPGSFLDPLLSPSLMEDYELRQLVL Sbjct: 421 ISQLGDLGTRRIQIMLLRSLLMVTSGYKAKTIVTALPGSFLDPLLSPSLMEDYELRQLVL 480 Query: 481 EVMHNLMDRHDNRAKLRGIRIIPDVADLKIKREKICRQDTSFMKKNGQQLYRHIYLGCKE 540 EVMHNLMDRHDNRAKLRGIRIIPDVADLKIKREKICRQDTSFMKKNGQQLYRHIYLGCKE Sbjct: 481 EVMHNLMDRHDNRAKLRGIRIIPDVADLKIKREKICRQDTSFMKKNGQQLYRHIYLGCKE 540 Query: 541 EDNVQKNYELLYTSLALITIELANEEVVIDLIRLAIALQDSAIINEDNLPMFHRCGIMAL 600 EDNVQKNYELLYTSLALITIELANEEVVIDLIRLAIALQDSAIINEDNLPMFHRCGIMAL Sbjct: 541 EDNVQKNYELLYTSLALITIELANEEVVIDLIRLAIALQDSAIINEDNLPMFHRCGIMAL 600 Query: 601 VAAYLNFVSQMIAVPAFCQHVSKVIEIRTMEAPYFLPEHIFRDKCMLPKSLEKHEKDLYF 660 VAAYLNFVSQMIAVPAFCQHVSKVIEIRTMEAPYFLPEHIFRDKCMLPKSLEKHEKDLYF Sbjct: 601 VAAYLNFVSQMIAVPAFCQHVSKVIEIRTMEAPYFLPEHIFRDKCMLPKSLEKHEKDLYF 660 Query: 661 LTNKIAESLGGSGYSVERLSVPYVPQVTDEDRLSRRKSIVDTVSIQVDILSNNVPSDDVV 720 LTNKIAESLGGSGYSVERLSVPYVPQVTDEDRLSRRKSIVDTVSIQVDILSNNVPSDDVV Sbjct: 661 LTNKIAESLGGSGYSVERLSVPYVPQVTDEDRLSRRKSIVDTVSIQVDILSNNVPSDDVV 720 Query: 721 SNTEEITFEALKKAIDTSGMEEQEKEKRRLVIEKFQKAPFEEIAAQCESKANLLHDRLAQ 780 SNTEEITFEALKKAIDTSGMEEQEKEKRRLVIEKFQKAPFEEIAAQCESKANLLHDRLAQ Sbjct: 721 SNTEEITFEALKKAIDTSGMEEQEKEKRRLVIEKFQKAPFEEIAAQCESKANLLHDRLAQ 780 Query: 781 ILELTIRPPPSPSGTLTITSGHAQYQSVPVYEMKFPDLCVY 821 ILELTIRPPPSPSGTLTITSGHAQYQSVPVYEMKFPDLCVY Sbjct: 781 ILELTIRPPPSPSGTLTITSGHAQYQSVPVYEMKFPDLCVY 821 >gi|190684710 EFR3 homolog B [Homo sapiens] Length = 817 Score = 1026 bits (2653), Expect = 0.0 Identities = 522/821 (63%), Positives = 647/821 (78%), Gaps = 11/821 (1%) Query: 5 VCCCCSALRPRYKRLVDNIFPEDPKDGLVKTDMEKLTFYAVSAPEKLDRIGSYLAERLSR 64 VC CC ALRPRYKRLVDNIFPEDP+DGLVKT+MEKLTFYA+SAPEKLDRIG+YL+ERL R Sbjct: 4 VCGCCGALRPRYKRLVDNIFPEDPEDGLVKTNMEKLTFYALSAPEKLDRIGAYLSERLIR 63 Query: 65 DVVRHRSGYVLIAMEALDQLLMACHSQSIKPFVESFLHMVAKLLESGEPKLQVLGTNSFV 124 DV RHR GYV IAMEALDQLLMACH QSI FVESFL MVAKLLES +P LQ+LGTNSFV Sbjct: 64 DVGRHRYGYVCIAMEALDQLLMACHCQSINLFVESFLKMVAKLLESEKPNLQILGTNSFV 123 Query: 125 KFANIEEDTPSYHRRYDFFVSRFSAMCHSCHSDPEIRTEIRIAGIRGIQGVVRKTVNDEL 184 KFANIEEDTPSYHR YDFFVSRFS MCHS H D EI+T+IR++GI+G+QGVVRKTVNDEL Sbjct: 124 KFANIEEDTPSYHRSYDFFVSRFSEMCHSSHDDLEIKTKIRMSGIKGLQGVVRKTVNDEL 183 Query: 185 RATIWEPQHMDKIVPSLLFNMQKIEEVDSRIGPPSSPSATDKE-ENPAVLAENCFRELLG 243 +A IW+PQHMDKIVPSLLFN+Q +EE +SR PS A +KE E+PA LAE C RELLG Sbjct: 184 QANIWDPQHMDKIVPSLLFNLQHVEEAESR--SPSPLQAPEKEKESPAELAERCLRELLG 241 Query: 244 RATFGNMNNAVRPVFAHLDHHKLWDPNEFAVHCFKIIMYSIQAQYSHHVIQEILGHLDAR 303 RA FGN+ NA++PV HLD+H LW+P FA+ CFKIIMYSIQ Q+SH VIQ++LGHLDA Sbjct: 242 RAAFGNIKNAIKPVLIHLDNHSLWEPKVFAIRCFKIIMYSIQPQHSHLVIQQLLGHLDAN 301 Query: 304 KKDAPRVRAGIIQVLLEAVAIAAKGSIGPTVLEVFNTLLKHLRLSVEFEANDLQGGSVGS 363 + A VRAGI++VL EA IAA GS+GPTVLE+FNTLL+ LRLS+++ L G G+ Sbjct: 302 SRSAATVRAGIVEVLSEAAVIAATGSVGPTVLEMFNTLLRQLRLSIDYA---LTGSYDGA 358 Query: 364 VNLNTS-SKDNDEKIVQNAIIQTIGFFGSNLPDYQRSEIMMFIMGKVPVFGTSTH-TLDI 421 V+L T K+++E++ Q A+I+T+G F S LP YQRSE+++FIM KVP S H +D Sbjct: 359 VSLGTKIIKEHEERMFQEAVIKTVGSFASTLPTYQRSEVILFIMSKVP--RPSLHQAVDT 416 Query: 422 SQLGDLGTRRIQIMLLRSLLMVTSGYKAKTIVTALPGSFLDPLLSPSLMEDYELRQLVLE 481 + G+ R QIMLL+SLL V++G++ +++ALP +FLD LLS +LMED E+R VLE Sbjct: 417 GRTGENRNRLTQIMLLKSLLQVSTGFQCNNMMSALPSNFLDRLLSTALMEDAEIRLFVLE 476 Query: 482 VMHNLMDRHDNRAKLRGIRIIPDVADLKIKREKICRQDTSFMKKNGQQLYRHIYLGCKEE 541 ++ + +DRH NR K I + D++ LK+K +K RQDT FMKK+ QQLYRHIYL CKEE Sbjct: 477 ILISFIDRHGNRHKFSTISTLSDISVLKLKVDKCSRQDTVFMKKHSQQLYRHIYLSCKEE 536 Query: 542 DNVQKNYELLYTSLALITIELANEEVVIDLIRLAIALQDSAIINEDNLPMFHRCGIMALV 601 NVQK+YE LY LALI+IELANEEVV+DLIRL +A+QD A +NE+NLP+++RC + AL Sbjct: 537 TNVQKHYEALYGLLALISIELANEEVVVDLIRLVLAVQDVAQVNEENLPVYNRCALYALG 596 Query: 602 AAYLNFVSQMIAVPAFCQHVSKVIEIRTMEAPYFLPEHIFRDKCMLPKSLEKHEKDLYFL 661 AAYLN +SQ+ VPAFCQH+ +VIE R EAPY LPE +F ++ L ++L+ +L F Sbjct: 597 AAYLNLISQLTTVPAFCQHIHEVIETRKKEAPYMLPEDVFVERPRLSQNLDGVVIELLFR 656 Query: 662 TNKIAESLGGSGYSVERLSVPYVPQVTDEDRLSRRKSIVDTVSIQVDILSNNVPSDDVVS 721 +KI+E LGGSGY+ +RL +PY+PQ+TDEDRLS+R+SI +T+S+QV++ S N P + Sbjct: 657 QSKISEVLGGSGYNSDRLCLPYIPQLTDEDRLSKRRSIGETISLQVEVESRNSPEKEERV 716 Query: 722 NTEEITFEALKKAI-DTSGMEEQEKEKRRLVIEKFQKAPFEEIAAQCESKANLLHDRLAQ 780 EEIT+E LKKAI D+ +EEQE+E+RR V+EKFQKAPFEEIAA C ++A+LL +L Q Sbjct: 717 PAEEITYETLKKAIVDSVAVEEQERERRRQVVEKFQKAPFEEIAAHCGARASLLQSKLNQ 776 Query: 781 ILELTIRPPPSPSGTLTITSGHAQYQSVPVYEMKFPDLCVY 821 I E+TIRPPPSPSGT+T G Q S+PVYEMKFPDLCVY Sbjct: 777 IFEITIRPPPSPSGTITAAYGQPQNHSIPVYEMKFPDLCVY 817 >gi|16554449 zonadhesin isoform 3 [Homo sapiens] Length = 2812 Score = 33.5 bits (75), Expect = 0.82 Identities = 34/150 (22%), Positives = 58/150 (38%), Gaps = 7/150 (4%) Query: 648 PKSLEKHEKDLYFLTNKIAESLGGSGYSVERLSVPYVPQVTDEDRLSRRKSIVDTVSIQV 707 P+ L + L T K + + S E+L++P T++ +S K + T + Sbjct: 868 PEKLTIPTEKLTIPTEKPTIPIEETTISTEKLTIP-----TEKPTISPEKPTISTEKPTI 922 Query: 708 DILSNNVPSDDVVSNTEEITFEALKKAIDTSGMEEQEKEKRRLVIEKFQKAPFEEIAAQC 767 +P+++ +TE++T K I + EK + EK P E++ Sbjct: 923 PTEKPTIPTEETTISTEKLTIPTEKPTISPEKL-TIPTEKPTISTEK-PTIPTEKLTIPT 980 Query: 768 ESKANLLHDRLAQILELTIRPPPSPSGTLT 797 E +LT PP PS T T Sbjct: 981 EKPTIPTEKPTIPTEKLTALRPPHPSPTAT 1010 >gi|27881494 zonadhesin isoform 6 [Homo sapiens] Length = 2721 Score = 33.5 bits (75), Expect = 0.82 Identities = 34/150 (22%), Positives = 58/150 (38%), Gaps = 7/150 (4%) Query: 648 PKSLEKHEKDLYFLTNKIAESLGGSGYSVERLSVPYVPQVTDEDRLSRRKSIVDTVSIQV 707 P+ L + L T K + + S E+L++P T++ +S K + T + Sbjct: 868 PEKLTIPTEKLTIPTEKPTIPIEETTISTEKLTIP-----TEKPTISPEKPTISTEKPTI 922 Query: 708 DILSNNVPSDDVVSNTEEITFEALKKAIDTSGMEEQEKEKRRLVIEKFQKAPFEEIAAQC 767 +P+++ +TE++T K I + EK + EK P E++ Sbjct: 923 PTEKPTIPTEETTISTEKLTIPTEKPTISPEKL-TIPTEKPTISTEK-PTIPTEKLTIPT 980 Query: 768 ESKANLLHDRLAQILELTIRPPPSPSGTLT 797 E +LT PP PS T T Sbjct: 981 EKPTIPTEKPTIPTEKLTALRPPHPSPTAT 1010 >gi|20357556 cortactin isoform b [Homo sapiens] Length = 513 Score = 33.1 bits (74), Expect = 1.1 Identities = 42/177 (23%), Positives = 71/177 (40%), Gaps = 40/177 (22%) Query: 642 RDKCML----PKSLEKHEKDLYFLTNKIAESLGGSGYSVERLSVPYVPQVTDEDRLSRRK 697 +DKC L + L+ HE + ++ GG Y V++ DR+ + Sbjct: 243 QDKCALGWDHQEKLQLHESQKDY-----SKGFGGK-YGVQK------------DRMDKNA 284 Query: 698 SIVDTVSIQVDILSNNVPSDDVVSNTEEI--TFEALKKAIDTSGMEEQEKEKRRLVIEKF 755 S + V+ VP + V S T I FE L K E++++++R+ E+ Sbjct: 285 STFEDVTQVSSAYQKTVPVEAVTSKTSNIRANFENLAK-------EKEQEDRRKAEAERA 337 Query: 756 QKAPFEEIAAQCESKANLLHDRLAQILELTIRPPPSPSGTLTITSGHAQYQSVPVYE 812 Q+ +E Q E++ L A+ + P P P+ + S PVYE Sbjct: 338 QRMA-KERQEQEEARRKLEEQARAKTQTPPVSPAPQPT--------EERLPSSPVYE 385 >gi|189409124 armadillo repeat containing 3 [Homo sapiens] Length = 872 Score = 32.7 bits (73), Expect = 1.4 Identities = 36/163 (22%), Positives = 68/163 (41%), Gaps = 14/163 (8%) Query: 346 RLSVEFEANDLQGGSVGSVNLNTSSKDNDEKIVQNAIIQTIGFFGSNLPDYQRSEIMMFI 405 + +++ E N +G+V T +++KIV+ G SN D ++ + + Sbjct: 51 KFALKGEENKTTLLELGAVEPLTKLLTHEDKIVRRNATMIFGILASN-NDVKKLLRELDV 109 Query: 406 MGKVPVFGTSTHTLDISQLGDLGTRRIQIMLLRSLLMVTSGYKAKTIVTALPGSFLDPLL 465 M V I+QL + I SL + + + V L+PL+ Sbjct: 110 MNSV-----------IAQLAP--EEEVVIHEFASLCLANMSAEYTSKVQIFEHGGLEPLI 156 Query: 466 SPSLMEDYELRQLVLEVMHNLMDRHDNRAKLRGIRIIPDVADL 508 D ++++ +E ++NL+ RAKL+ + IP + DL Sbjct: 157 RLLSSPDPDVKKNSMECIYNLVQDFQCRAKLQELNAIPPILDL 199 >gi|20357552 cortactin isoform a [Homo sapiens] Length = 550 Score = 32.7 bits (73), Expect = 1.4 Identities = 31/125 (24%), Positives = 53/125 (42%), Gaps = 18/125 (14%) Query: 690 EDRLSRRKSIVDTVSIQVDILSNNVPSDDVVSNTEEI--TFEALKKAIDTSGMEEQEKEK 747 +DR+ + S + V+ VP + V S T I FE L K E++++++ Sbjct: 314 KDRMDKNASTFEDVTQVSSAYQKTVPVEAVTSKTSNIRANFENLAK-------EKEQEDR 366 Query: 748 RRLVIEKFQKAPFEEIAAQCESKANLLHDRLAQILELTIRPPPSPSGTLTITSGHAQYQS 807 R+ E+ Q+ +E Q E++ L A+ + P P P+ + S Sbjct: 367 RKAEAERAQRMA-KERQEQEEARRKLEEQARAKTQTPPVSPAPQPT--------EERLPS 417 Query: 808 VPVYE 812 PVYE Sbjct: 418 SPVYE 422 >gi|5902122 spectrin, beta, non-erythrocytic 2 [Homo sapiens] Length = 2390 Score = 30.4 bits (67), Expect = 7.0 Identities = 43/189 (22%), Positives = 86/189 (45%), Gaps = 19/189 (10%) Query: 597 IMALVAAYLNFVSQMIAVPAFCQHVSKVIEIRTMEAPYFLPEHIFRDKCMLPKSLEKHEK 656 I+ VA Y ++ S+M A+ + + KV++ MEA + ++ + + + L+ E+ Sbjct: 269 IITYVATYYHYFSKMKALAVEGKRIGKVLD-HAMEAERLVEKY----ESLASELLQWIEQ 323 Query: 657 DLYFLTNK-IAESLGGSGYSVERL----SVPYVPQVTDEDRLSRRKSIVDTVSIQVDILS 711 + L ++ +A SL G ++ +V P+ T++ L V +IQ + + Sbjct: 324 TIVTLNDRQLANSLSGVQNQLQSFNSYRTVEKPPKFTEKGNLE-----VLLFTIQSKLRA 378 Query: 712 NNVPSDDVVSNTEEITFEALKKAIDTSGMEEQEKEKRRLVIEKFQKAPFEEIAAQCESKA 771 NN V + E + KA + E E+E L E ++ E++AA+ + KA Sbjct: 379 NN---QKVYTPREGRLISDINKAWERLEKAEHERE-LALRTELIRQEKLEQLAARFDRKA 434 Query: 772 NLLHDRLAQ 780 + L++ Sbjct: 435 AMRETWLSE 443 >gi|21264592 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 [Homo sapiens] Length = 1704 Score = 30.4 bits (67), Expect = 7.0 Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 11/97 (11%) Query: 665 IAESLGGSGYSVERLSVPYVPQVTDEDRLSRRKSIVDTVSIQVDILSNNVPSDDVVSNTE 724 + ++L S SVER P +D+LS K T + N +D + ++ Sbjct: 123 VRKNLEDSDASVERSQYPQ-----SDDKLSPPKRDFPTAE---EPHLNLGSLNDSLFGSD 174 Query: 725 EITFEAL--KKAIDTSGMEEQEKEKRRLVIEKFQKAP 759 I E+L KK +D + +EEQ+ EK +L+ E K P Sbjct: 175 NIKIESLITKKTVDHT-VEEQQTEKVKLITENLSKLP 210 >gi|38454322 adhesion molecule with Ig-like domain 3 [Homo sapiens] Length = 504 Score = 30.0 bits (66), Expect = 9.1 Identities = 31/145 (21%), Positives = 65/145 (44%), Gaps = 10/145 (6%) Query: 526 NGQQLYRHIYLGCKEEDNVQKNYELLYTSLALITIELANEEV----VIDLIRLAIALQDS 581 +G + H+YLGC E + ++ ++ L+T++L++ + V +L L L++ Sbjct: 154 HGLRALSHLYLGCNELASFSFDHLHGLSATHLLTLDLSSNRLGHISVPELAALPAFLKNG 213 Query: 582 AIINEDNLPMFHRCGIMALVAAYLNFVSQMIAVPAFC-QHVSKVIEIRTMEAPYFLPEHI 640 ++ + LP C + L+ + + AV F ++V ++ +F + Sbjct: 214 LYLHNNPLPC--DCRLYHLLQRW--HQRGLSAVRDFAREYVCLAFKVPASRVRFFQHSRV 269 Query: 641 FRDKCMLPK-SLEKHEKDLYFLTNK 664 F + P LE+ E+ LY L + Sbjct: 270 FENCSSAPALGLERPEEHLYALVGR 294 >gi|116875765 tight junction protein 1 isoform b [Homo sapiens] Length = 1668 Score = 30.0 bits (66), Expect = 9.1 Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 2/50 (4%) Query: 185 RATIWEPQHMDKIVPSLLFNMQ-KIEEVDSRIGP-PSSPSATDKEENPAV 232 RA +EP H VP L+ + Q K E + S P P P+ T++EE+PA+ Sbjct: 1130 RAGHFEPLHGAAAVPPLIPSSQHKPEALPSNTKPLPPPPTQTEEEEDPAM 1179 >gi|116875767 tight junction protein 1 isoform a [Homo sapiens] Length = 1748 Score = 30.0 bits (66), Expect = 9.1 Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 2/50 (4%) Query: 185 RATIWEPQHMDKIVPSLLFNMQ-KIEEVDSRIGP-PSSPSATDKEENPAV 232 RA +EP H VP L+ + Q K E + S P P P+ T++EE+PA+ Sbjct: 1210 RAGHFEPLHGAAAVPPLIPSSQHKPEALPSNTKPLPPPPTQTEEEEDPAM 1259 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.321 0.136 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 29,173,728 Number of Sequences: 37866 Number of extensions: 1249912 Number of successful extensions: 3613 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 9 Number of HSP's that attempted gapping in prelim test: 3600 Number of HSP's gapped (non-prelim): 14 length of query: 821 length of database: 18,247,518 effective HSP length: 111 effective length of query: 710 effective length of database: 14,044,392 effective search space: 9971518320 effective search space used: 9971518320 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.