Guide to the Human Genome
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Search of human proteins with 154146218

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|154146218 EFR3 homolog A [Homo sapiens]
         (821 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|154146218 EFR3 homolog A [Homo sapiens]                           1626   0.0  
gi|190684710 EFR3 homolog B [Homo sapiens]                           1026   0.0  
gi|16554449 zonadhesin isoform 3 [Homo sapiens]                        33   0.82 
gi|27881494 zonadhesin isoform 6 [Homo sapiens]                        33   0.82 
gi|20357556 cortactin isoform b [Homo sapiens]                         33   1.1  
gi|189409124 armadillo repeat containing 3 [Homo sapiens]              33   1.4  
gi|20357552 cortactin isoform a [Homo sapiens]                         33   1.4  
gi|5902122 spectrin, beta, non-erythrocytic 2 [Homo sapiens]           30   7.0  
gi|21264592 ArfGAP with RhoGAP domain, ankyrin repeat and PH dom...    30   7.0  
gi|38454322 adhesion molecule with Ig-like domain 3 [Homo sapiens]     30   9.1  
gi|116875765 tight junction protein 1 isoform b [Homo sapiens]         30   9.1  
gi|116875767 tight junction protein 1 isoform a [Homo sapiens]         30   9.1  

>gi|154146218 EFR3 homolog A [Homo sapiens]
          Length = 821

 Score = 1626 bits (4210), Expect = 0.0
 Identities = 821/821 (100%), Positives = 821/821 (100%)

Query: 1   MPTRVCCCCSALRPRYKRLVDNIFPEDPKDGLVKTDMEKLTFYAVSAPEKLDRIGSYLAE 60
           MPTRVCCCCSALRPRYKRLVDNIFPEDPKDGLVKTDMEKLTFYAVSAPEKLDRIGSYLAE
Sbjct: 1   MPTRVCCCCSALRPRYKRLVDNIFPEDPKDGLVKTDMEKLTFYAVSAPEKLDRIGSYLAE 60

Query: 61  RLSRDVVRHRSGYVLIAMEALDQLLMACHSQSIKPFVESFLHMVAKLLESGEPKLQVLGT 120
           RLSRDVVRHRSGYVLIAMEALDQLLMACHSQSIKPFVESFLHMVAKLLESGEPKLQVLGT
Sbjct: 61  RLSRDVVRHRSGYVLIAMEALDQLLMACHSQSIKPFVESFLHMVAKLLESGEPKLQVLGT 120

Query: 121 NSFVKFANIEEDTPSYHRRYDFFVSRFSAMCHSCHSDPEIRTEIRIAGIRGIQGVVRKTV 180
           NSFVKFANIEEDTPSYHRRYDFFVSRFSAMCHSCHSDPEIRTEIRIAGIRGIQGVVRKTV
Sbjct: 121 NSFVKFANIEEDTPSYHRRYDFFVSRFSAMCHSCHSDPEIRTEIRIAGIRGIQGVVRKTV 180

Query: 181 NDELRATIWEPQHMDKIVPSLLFNMQKIEEVDSRIGPPSSPSATDKEENPAVLAENCFRE 240
           NDELRATIWEPQHMDKIVPSLLFNMQKIEEVDSRIGPPSSPSATDKEENPAVLAENCFRE
Sbjct: 181 NDELRATIWEPQHMDKIVPSLLFNMQKIEEVDSRIGPPSSPSATDKEENPAVLAENCFRE 240

Query: 241 LLGRATFGNMNNAVRPVFAHLDHHKLWDPNEFAVHCFKIIMYSIQAQYSHHVIQEILGHL 300
           LLGRATFGNMNNAVRPVFAHLDHHKLWDPNEFAVHCFKIIMYSIQAQYSHHVIQEILGHL
Sbjct: 241 LLGRATFGNMNNAVRPVFAHLDHHKLWDPNEFAVHCFKIIMYSIQAQYSHHVIQEILGHL 300

Query: 301 DARKKDAPRVRAGIIQVLLEAVAIAAKGSIGPTVLEVFNTLLKHLRLSVEFEANDLQGGS 360
           DARKKDAPRVRAGIIQVLLEAVAIAAKGSIGPTVLEVFNTLLKHLRLSVEFEANDLQGGS
Sbjct: 301 DARKKDAPRVRAGIIQVLLEAVAIAAKGSIGPTVLEVFNTLLKHLRLSVEFEANDLQGGS 360

Query: 361 VGSVNLNTSSKDNDEKIVQNAIIQTIGFFGSNLPDYQRSEIMMFIMGKVPVFGTSTHTLD 420
           VGSVNLNTSSKDNDEKIVQNAIIQTIGFFGSNLPDYQRSEIMMFIMGKVPVFGTSTHTLD
Sbjct: 361 VGSVNLNTSSKDNDEKIVQNAIIQTIGFFGSNLPDYQRSEIMMFIMGKVPVFGTSTHTLD 420

Query: 421 ISQLGDLGTRRIQIMLLRSLLMVTSGYKAKTIVTALPGSFLDPLLSPSLMEDYELRQLVL 480
           ISQLGDLGTRRIQIMLLRSLLMVTSGYKAKTIVTALPGSFLDPLLSPSLMEDYELRQLVL
Sbjct: 421 ISQLGDLGTRRIQIMLLRSLLMVTSGYKAKTIVTALPGSFLDPLLSPSLMEDYELRQLVL 480

Query: 481 EVMHNLMDRHDNRAKLRGIRIIPDVADLKIKREKICRQDTSFMKKNGQQLYRHIYLGCKE 540
           EVMHNLMDRHDNRAKLRGIRIIPDVADLKIKREKICRQDTSFMKKNGQQLYRHIYLGCKE
Sbjct: 481 EVMHNLMDRHDNRAKLRGIRIIPDVADLKIKREKICRQDTSFMKKNGQQLYRHIYLGCKE 540

Query: 541 EDNVQKNYELLYTSLALITIELANEEVVIDLIRLAIALQDSAIINEDNLPMFHRCGIMAL 600
           EDNVQKNYELLYTSLALITIELANEEVVIDLIRLAIALQDSAIINEDNLPMFHRCGIMAL
Sbjct: 541 EDNVQKNYELLYTSLALITIELANEEVVIDLIRLAIALQDSAIINEDNLPMFHRCGIMAL 600

Query: 601 VAAYLNFVSQMIAVPAFCQHVSKVIEIRTMEAPYFLPEHIFRDKCMLPKSLEKHEKDLYF 660
           VAAYLNFVSQMIAVPAFCQHVSKVIEIRTMEAPYFLPEHIFRDKCMLPKSLEKHEKDLYF
Sbjct: 601 VAAYLNFVSQMIAVPAFCQHVSKVIEIRTMEAPYFLPEHIFRDKCMLPKSLEKHEKDLYF 660

Query: 661 LTNKIAESLGGSGYSVERLSVPYVPQVTDEDRLSRRKSIVDTVSIQVDILSNNVPSDDVV 720
           LTNKIAESLGGSGYSVERLSVPYVPQVTDEDRLSRRKSIVDTVSIQVDILSNNVPSDDVV
Sbjct: 661 LTNKIAESLGGSGYSVERLSVPYVPQVTDEDRLSRRKSIVDTVSIQVDILSNNVPSDDVV 720

Query: 721 SNTEEITFEALKKAIDTSGMEEQEKEKRRLVIEKFQKAPFEEIAAQCESKANLLHDRLAQ 780
           SNTEEITFEALKKAIDTSGMEEQEKEKRRLVIEKFQKAPFEEIAAQCESKANLLHDRLAQ
Sbjct: 721 SNTEEITFEALKKAIDTSGMEEQEKEKRRLVIEKFQKAPFEEIAAQCESKANLLHDRLAQ 780

Query: 781 ILELTIRPPPSPSGTLTITSGHAQYQSVPVYEMKFPDLCVY 821
           ILELTIRPPPSPSGTLTITSGHAQYQSVPVYEMKFPDLCVY
Sbjct: 781 ILELTIRPPPSPSGTLTITSGHAQYQSVPVYEMKFPDLCVY 821


>gi|190684710 EFR3 homolog B [Homo sapiens]
          Length = 817

 Score = 1026 bits (2653), Expect = 0.0
 Identities = 522/821 (63%), Positives = 647/821 (78%), Gaps = 11/821 (1%)

Query: 5   VCCCCSALRPRYKRLVDNIFPEDPKDGLVKTDMEKLTFYAVSAPEKLDRIGSYLAERLSR 64
           VC CC ALRPRYKRLVDNIFPEDP+DGLVKT+MEKLTFYA+SAPEKLDRIG+YL+ERL R
Sbjct: 4   VCGCCGALRPRYKRLVDNIFPEDPEDGLVKTNMEKLTFYALSAPEKLDRIGAYLSERLIR 63

Query: 65  DVVRHRSGYVLIAMEALDQLLMACHSQSIKPFVESFLHMVAKLLESGEPKLQVLGTNSFV 124
           DV RHR GYV IAMEALDQLLMACH QSI  FVESFL MVAKLLES +P LQ+LGTNSFV
Sbjct: 64  DVGRHRYGYVCIAMEALDQLLMACHCQSINLFVESFLKMVAKLLESEKPNLQILGTNSFV 123

Query: 125 KFANIEEDTPSYHRRYDFFVSRFSAMCHSCHSDPEIRTEIRIAGIRGIQGVVRKTVNDEL 184
           KFANIEEDTPSYHR YDFFVSRFS MCHS H D EI+T+IR++GI+G+QGVVRKTVNDEL
Sbjct: 124 KFANIEEDTPSYHRSYDFFVSRFSEMCHSSHDDLEIKTKIRMSGIKGLQGVVRKTVNDEL 183

Query: 185 RATIWEPQHMDKIVPSLLFNMQKIEEVDSRIGPPSSPSATDKE-ENPAVLAENCFRELLG 243
           +A IW+PQHMDKIVPSLLFN+Q +EE +SR   PS   A +KE E+PA LAE C RELLG
Sbjct: 184 QANIWDPQHMDKIVPSLLFNLQHVEEAESR--SPSPLQAPEKEKESPAELAERCLRELLG 241

Query: 244 RATFGNMNNAVRPVFAHLDHHKLWDPNEFAVHCFKIIMYSIQAQYSHHVIQEILGHLDAR 303
           RA FGN+ NA++PV  HLD+H LW+P  FA+ CFKIIMYSIQ Q+SH VIQ++LGHLDA 
Sbjct: 242 RAAFGNIKNAIKPVLIHLDNHSLWEPKVFAIRCFKIIMYSIQPQHSHLVIQQLLGHLDAN 301

Query: 304 KKDAPRVRAGIIQVLLEAVAIAAKGSIGPTVLEVFNTLLKHLRLSVEFEANDLQGGSVGS 363
            + A  VRAGI++VL EA  IAA GS+GPTVLE+FNTLL+ LRLS+++    L G   G+
Sbjct: 302 SRSAATVRAGIVEVLSEAAVIAATGSVGPTVLEMFNTLLRQLRLSIDYA---LTGSYDGA 358

Query: 364 VNLNTS-SKDNDEKIVQNAIIQTIGFFGSNLPDYQRSEIMMFIMGKVPVFGTSTH-TLDI 421
           V+L T   K+++E++ Q A+I+T+G F S LP YQRSE+++FIM KVP    S H  +D 
Sbjct: 359 VSLGTKIIKEHEERMFQEAVIKTVGSFASTLPTYQRSEVILFIMSKVP--RPSLHQAVDT 416

Query: 422 SQLGDLGTRRIQIMLLRSLLMVTSGYKAKTIVTALPGSFLDPLLSPSLMEDYELRQLVLE 481
            + G+   R  QIMLL+SLL V++G++   +++ALP +FLD LLS +LMED E+R  VLE
Sbjct: 417 GRTGENRNRLTQIMLLKSLLQVSTGFQCNNMMSALPSNFLDRLLSTALMEDAEIRLFVLE 476

Query: 482 VMHNLMDRHDNRAKLRGIRIIPDVADLKIKREKICRQDTSFMKKNGQQLYRHIYLGCKEE 541
           ++ + +DRH NR K   I  + D++ LK+K +K  RQDT FMKK+ QQLYRHIYL CKEE
Sbjct: 477 ILISFIDRHGNRHKFSTISTLSDISVLKLKVDKCSRQDTVFMKKHSQQLYRHIYLSCKEE 536

Query: 542 DNVQKNYELLYTSLALITIELANEEVVIDLIRLAIALQDSAIINEDNLPMFHRCGIMALV 601
            NVQK+YE LY  LALI+IELANEEVV+DLIRL +A+QD A +NE+NLP+++RC + AL 
Sbjct: 537 TNVQKHYEALYGLLALISIELANEEVVVDLIRLVLAVQDVAQVNEENLPVYNRCALYALG 596

Query: 602 AAYLNFVSQMIAVPAFCQHVSKVIEIRTMEAPYFLPEHIFRDKCMLPKSLEKHEKDLYFL 661
           AAYLN +SQ+  VPAFCQH+ +VIE R  EAPY LPE +F ++  L ++L+    +L F 
Sbjct: 597 AAYLNLISQLTTVPAFCQHIHEVIETRKKEAPYMLPEDVFVERPRLSQNLDGVVIELLFR 656

Query: 662 TNKIAESLGGSGYSVERLSVPYVPQVTDEDRLSRRKSIVDTVSIQVDILSNNVPSDDVVS 721
            +KI+E LGGSGY+ +RL +PY+PQ+TDEDRLS+R+SI +T+S+QV++ S N P  +   
Sbjct: 657 QSKISEVLGGSGYNSDRLCLPYIPQLTDEDRLSKRRSIGETISLQVEVESRNSPEKEERV 716

Query: 722 NTEEITFEALKKAI-DTSGMEEQEKEKRRLVIEKFQKAPFEEIAAQCESKANLLHDRLAQ 780
             EEIT+E LKKAI D+  +EEQE+E+RR V+EKFQKAPFEEIAA C ++A+LL  +L Q
Sbjct: 717 PAEEITYETLKKAIVDSVAVEEQERERRRQVVEKFQKAPFEEIAAHCGARASLLQSKLNQ 776

Query: 781 ILELTIRPPPSPSGTLTITSGHAQYQSVPVYEMKFPDLCVY 821
           I E+TIRPPPSPSGT+T   G  Q  S+PVYEMKFPDLCVY
Sbjct: 777 IFEITIRPPPSPSGTITAAYGQPQNHSIPVYEMKFPDLCVY 817


>gi|16554449 zonadhesin isoform 3 [Homo sapiens]
          Length = 2812

 Score = 33.5 bits (75), Expect = 0.82
 Identities = 34/150 (22%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 648  PKSLEKHEKDLYFLTNKIAESLGGSGYSVERLSVPYVPQVTDEDRLSRRKSIVDTVSIQV 707
            P+ L    + L   T K    +  +  S E+L++P     T++  +S  K  + T    +
Sbjct: 868  PEKLTIPTEKLTIPTEKPTIPIEETTISTEKLTIP-----TEKPTISPEKPTISTEKPTI 922

Query: 708  DILSNNVPSDDVVSNTEEITFEALKKAIDTSGMEEQEKEKRRLVIEKFQKAPFEEIAAQC 767
                  +P+++   +TE++T    K  I    +     EK  +  EK    P E++    
Sbjct: 923  PTEKPTIPTEETTISTEKLTIPTEKPTISPEKL-TIPTEKPTISTEK-PTIPTEKLTIPT 980

Query: 768  ESKANLLHDRLAQILELTIRPPPSPSGTLT 797
            E              +LT   PP PS T T
Sbjct: 981  EKPTIPTEKPTIPTEKLTALRPPHPSPTAT 1010


>gi|27881494 zonadhesin isoform 6 [Homo sapiens]
          Length = 2721

 Score = 33.5 bits (75), Expect = 0.82
 Identities = 34/150 (22%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 648  PKSLEKHEKDLYFLTNKIAESLGGSGYSVERLSVPYVPQVTDEDRLSRRKSIVDTVSIQV 707
            P+ L    + L   T K    +  +  S E+L++P     T++  +S  K  + T    +
Sbjct: 868  PEKLTIPTEKLTIPTEKPTIPIEETTISTEKLTIP-----TEKPTISPEKPTISTEKPTI 922

Query: 708  DILSNNVPSDDVVSNTEEITFEALKKAIDTSGMEEQEKEKRRLVIEKFQKAPFEEIAAQC 767
                  +P+++   +TE++T    K  I    +     EK  +  EK    P E++    
Sbjct: 923  PTEKPTIPTEETTISTEKLTIPTEKPTISPEKL-TIPTEKPTISTEK-PTIPTEKLTIPT 980

Query: 768  ESKANLLHDRLAQILELTIRPPPSPSGTLT 797
            E              +LT   PP PS T T
Sbjct: 981  EKPTIPTEKPTIPTEKLTALRPPHPSPTAT 1010


>gi|20357556 cortactin isoform b [Homo sapiens]
          Length = 513

 Score = 33.1 bits (74), Expect = 1.1
 Identities = 42/177 (23%), Positives = 71/177 (40%), Gaps = 40/177 (22%)

Query: 642 RDKCML----PKSLEKHEKDLYFLTNKIAESLGGSGYSVERLSVPYVPQVTDEDRLSRRK 697
           +DKC L     + L+ HE    +     ++  GG  Y V++            DR+ +  
Sbjct: 243 QDKCALGWDHQEKLQLHESQKDY-----SKGFGGK-YGVQK------------DRMDKNA 284

Query: 698 SIVDTVSIQVDILSNNVPSDDVVSNTEEI--TFEALKKAIDTSGMEEQEKEKRRLVIEKF 755
           S  + V+         VP + V S T  I   FE L K       E++++++R+   E+ 
Sbjct: 285 STFEDVTQVSSAYQKTVPVEAVTSKTSNIRANFENLAK-------EKEQEDRRKAEAERA 337

Query: 756 QKAPFEEIAAQCESKANLLHDRLAQILELTIRPPPSPSGTLTITSGHAQYQSVPVYE 812
           Q+   +E   Q E++  L     A+     + P P P+          +  S PVYE
Sbjct: 338 QRMA-KERQEQEEARRKLEEQARAKTQTPPVSPAPQPT--------EERLPSSPVYE 385


>gi|189409124 armadillo repeat containing 3 [Homo sapiens]
          Length = 872

 Score = 32.7 bits (73), Expect = 1.4
 Identities = 36/163 (22%), Positives = 68/163 (41%), Gaps = 14/163 (8%)

Query: 346 RLSVEFEANDLQGGSVGSVNLNTSSKDNDEKIVQNAIIQTIGFFGSNLPDYQRSEIMMFI 405
           + +++ E N      +G+V   T    +++KIV+       G   SN  D ++    + +
Sbjct: 51  KFALKGEENKTTLLELGAVEPLTKLLTHEDKIVRRNATMIFGILASN-NDVKKLLRELDV 109

Query: 406 MGKVPVFGTSTHTLDISQLGDLGTRRIQIMLLRSLLMVTSGYKAKTIVTALPGSFLDPLL 465
           M  V           I+QL       + I    SL +     +  + V       L+PL+
Sbjct: 110 MNSV-----------IAQLAP--EEEVVIHEFASLCLANMSAEYTSKVQIFEHGGLEPLI 156

Query: 466 SPSLMEDYELRQLVLEVMHNLMDRHDNRAKLRGIRIIPDVADL 508
                 D ++++  +E ++NL+     RAKL+ +  IP + DL
Sbjct: 157 RLLSSPDPDVKKNSMECIYNLVQDFQCRAKLQELNAIPPILDL 199


>gi|20357552 cortactin isoform a [Homo sapiens]
          Length = 550

 Score = 32.7 bits (73), Expect = 1.4
 Identities = 31/125 (24%), Positives = 53/125 (42%), Gaps = 18/125 (14%)

Query: 690 EDRLSRRKSIVDTVSIQVDILSNNVPSDDVVSNTEEI--TFEALKKAIDTSGMEEQEKEK 747
           +DR+ +  S  + V+         VP + V S T  I   FE L K       E++++++
Sbjct: 314 KDRMDKNASTFEDVTQVSSAYQKTVPVEAVTSKTSNIRANFENLAK-------EKEQEDR 366

Query: 748 RRLVIEKFQKAPFEEIAAQCESKANLLHDRLAQILELTIRPPPSPSGTLTITSGHAQYQS 807
           R+   E+ Q+   +E   Q E++  L     A+     + P P P+          +  S
Sbjct: 367 RKAEAERAQRMA-KERQEQEEARRKLEEQARAKTQTPPVSPAPQPT--------EERLPS 417

Query: 808 VPVYE 812
            PVYE
Sbjct: 418 SPVYE 422


>gi|5902122 spectrin, beta, non-erythrocytic 2 [Homo sapiens]
          Length = 2390

 Score = 30.4 bits (67), Expect = 7.0
 Identities = 43/189 (22%), Positives = 86/189 (45%), Gaps = 19/189 (10%)

Query: 597 IMALVAAYLNFVSQMIAVPAFCQHVSKVIEIRTMEAPYFLPEHIFRDKCMLPKSLEKHEK 656
           I+  VA Y ++ S+M A+    + + KV++   MEA   + ++    + +  + L+  E+
Sbjct: 269 IITYVATYYHYFSKMKALAVEGKRIGKVLD-HAMEAERLVEKY----ESLASELLQWIEQ 323

Query: 657 DLYFLTNK-IAESLGGSGYSVERL----SVPYVPQVTDEDRLSRRKSIVDTVSIQVDILS 711
            +  L ++ +A SL G    ++      +V   P+ T++  L      V   +IQ  + +
Sbjct: 324 TIVTLNDRQLANSLSGVQNQLQSFNSYRTVEKPPKFTEKGNLE-----VLLFTIQSKLRA 378

Query: 712 NNVPSDDVVSNTEEITFEALKKAIDTSGMEEQEKEKRRLVIEKFQKAPFEEIAAQCESKA 771
           NN     V +  E      + KA +     E E+E   L  E  ++   E++AA+ + KA
Sbjct: 379 NN---QKVYTPREGRLISDINKAWERLEKAEHERE-LALRTELIRQEKLEQLAARFDRKA 434

Query: 772 NLLHDRLAQ 780
            +    L++
Sbjct: 435 AMRETWLSE 443


>gi|21264592 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain
           2 [Homo sapiens]
          Length = 1704

 Score = 30.4 bits (67), Expect = 7.0
 Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 11/97 (11%)

Query: 665 IAESLGGSGYSVERLSVPYVPQVTDEDRLSRRKSIVDTVSIQVDILSNNVPSDDVVSNTE 724
           + ++L  S  SVER   P       +D+LS  K    T     +   N    +D +  ++
Sbjct: 123 VRKNLEDSDASVERSQYPQ-----SDDKLSPPKRDFPTAE---EPHLNLGSLNDSLFGSD 174

Query: 725 EITFEAL--KKAIDTSGMEEQEKEKRRLVIEKFQKAP 759
            I  E+L  KK +D + +EEQ+ EK +L+ E   K P
Sbjct: 175 NIKIESLITKKTVDHT-VEEQQTEKVKLITENLSKLP 210


>gi|38454322 adhesion molecule with Ig-like domain 3 [Homo sapiens]
          Length = 504

 Score = 30.0 bits (66), Expect = 9.1
 Identities = 31/145 (21%), Positives = 65/145 (44%), Gaps = 10/145 (6%)

Query: 526 NGQQLYRHIYLGCKEEDNVQKNYELLYTSLALITIELANEEV----VIDLIRLAIALQDS 581
           +G +   H+YLGC E  +   ++    ++  L+T++L++  +    V +L  L   L++ 
Sbjct: 154 HGLRALSHLYLGCNELASFSFDHLHGLSATHLLTLDLSSNRLGHISVPELAALPAFLKNG 213

Query: 582 AIINEDNLPMFHRCGIMALVAAYLNFVSQMIAVPAFC-QHVSKVIEIRTMEAPYFLPEHI 640
             ++ + LP    C +  L+  +      + AV  F  ++V    ++      +F    +
Sbjct: 214 LYLHNNPLPC--DCRLYHLLQRW--HQRGLSAVRDFAREYVCLAFKVPASRVRFFQHSRV 269

Query: 641 FRDKCMLPK-SLEKHEKDLYFLTNK 664
           F +    P   LE+ E+ LY L  +
Sbjct: 270 FENCSSAPALGLERPEEHLYALVGR 294


>gi|116875765 tight junction protein 1 isoform b [Homo sapiens]
          Length = 1668

 Score = 30.0 bits (66), Expect = 9.1
 Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 2/50 (4%)

Query: 185  RATIWEPQHMDKIVPSLLFNMQ-KIEEVDSRIGP-PSSPSATDKEENPAV 232
            RA  +EP H    VP L+ + Q K E + S   P P  P+ T++EE+PA+
Sbjct: 1130 RAGHFEPLHGAAAVPPLIPSSQHKPEALPSNTKPLPPPPTQTEEEEDPAM 1179


>gi|116875767 tight junction protein 1 isoform a [Homo sapiens]
          Length = 1748

 Score = 30.0 bits (66), Expect = 9.1
 Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 2/50 (4%)

Query: 185  RATIWEPQHMDKIVPSLLFNMQ-KIEEVDSRIGP-PSSPSATDKEENPAV 232
            RA  +EP H    VP L+ + Q K E + S   P P  P+ T++EE+PA+
Sbjct: 1210 RAGHFEPLHGAAAVPPLIPSSQHKPEALPSNTKPLPPPPTQTEEEEDPAM 1259


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.136    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,173,728
Number of Sequences: 37866
Number of extensions: 1249912
Number of successful extensions: 3613
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 3600
Number of HSP's gapped (non-prelim): 14
length of query: 821
length of database: 18,247,518
effective HSP length: 111
effective length of query: 710
effective length of database: 14,044,392
effective search space: 9971518320
effective search space used: 9971518320
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 66 (30.0 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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