Search of human proteins with 153791811

Search of human proteins with 153791811

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|153791811 hypothetical protein LOC152078 isoform 3 [Homo
sapiens]
         (118 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|153791811 hypothetical protein LOC152078 isoform 3 [Homo sapi...   249   3e-67
gi|194018508 hypothetical protein LOC152078 isoform 1 [Homo sapi...   207   1e-54
gi|194018506 hypothetical protein LOC152078 isoform 2 [Homo sapi...   151   1e-37
gi|92110021 PQ loop repeat containing 2 isoform 1 [Homo sapiens]       68   1e-12
gi|92110025 PQ loop repeat containing 2 isoform 1 [Homo sapiens]       68   1e-12
gi|92110023 PQ loop repeat containing 2 isoform 2 [Homo sapiens]       60   5e-10
gi|111378393 sodium channel, voltage-gated, type VII, alpha [Hom...    28   1.5  
gi|218751877 EF-hand calcium binding domain 1 isoform b [Homo sa...    27   3.5  
gi|13375787 EF-hand calcium binding domain 1 isoform a [Homo sap...    27   3.5  
gi|10880136 arrestin beta 1 isoform A [Homo sapiens]                   26   5.9  
gi|10880134 arrestin beta 1 isoform B [Homo sapiens]                   26   5.9  
gi|110611243 neurotensin receptor 1 [Homo sapiens]                     26   5.9  
gi|134152674 rabaptin, RAB GTPase binding effector protein 1 iso...    26   5.9  
gi|31377798 rabaptin, RAB GTPase binding effector protein 1 isof...    26   5.9  

>gi|153791811 hypothetical protein LOC152078 isoform 3 [Homo
           sapiens]
          Length = 118

 Score =  249 bits (636), Expect = 3e-67
 Identities = 118/118 (100%), Positives = 118/118 (100%)

Query: 1   MKVVGNYRVNTANSSTDTSGEHLTCLRSQLFVAYRNGRVDEAVSLGFLDCWIGGDLTNFK 60
           MKVVGNYRVNTANSSTDTSGEHLTCLRSQLFVAYRNGRVDEAVSLGFLDCWIGGDLTNFK
Sbjct: 1   MKVVGNYRVNTANSSTDTSGEHLTCLRSQLFVAYRNGRVDEAVSLGFLDCWIGGDLTNFK 60

Query: 61  GCYLTNQLPIQIFTAIFDMNTDVIILSQFMYYRLKNQKKKISEEDLRKELHFCCLHWP 118
           GCYLTNQLPIQIFTAIFDMNTDVIILSQFMYYRLKNQKKKISEEDLRKELHFCCLHWP
Sbjct: 61  GCYLTNQLPIQIFTAIFDMNTDVIILSQFMYYRLKNQKKKISEEDLRKELHFCCLHWP 118


>gi|194018508 hypothetical protein LOC152078 isoform 1 [Homo
           sapiens]
          Length = 135

 Score =  207 bits (528), Expect = 1e-54
 Identities = 100/101 (99%), Positives = 101/101 (100%)

Query: 1   MKVVGNYRVNTANSSTDTSGEHLTCLRSQLFVAYRNGRVDEAVSLGFLDCWIGGDLTNFK 60
           MKVVGNYRVNTANSSTDTSGEHLTCLRSQLFVAYRNGRVDEAVSLGFLDCWIGGDLTNFK
Sbjct: 1   MKVVGNYRVNTANSSTDTSGEHLTCLRSQLFVAYRNGRVDEAVSLGFLDCWIGGDLTNFK 60

Query: 61  GCYLTNQLPIQIFTAIFDMNTDVIILSQFMYYRLKNQKKKI 101
           GCYLTNQLPIQIFTAIFDMNTDVIILSQFMYYRLKNQKKK+
Sbjct: 61  GCYLTNQLPIQIFTAIFDMNTDVIILSQFMYYRLKNQKKKM 101


>gi|194018506 hypothetical protein LOC152078 isoform 2 [Homo
          sapiens]
          Length = 133

 Score =  151 bits (381), Expect = 1e-37
 Identities = 75/84 (89%), Positives = 76/84 (90%), Gaps = 6/84 (7%)

Query: 1  MKVVGNYRVNTANSSTDTSGEHLTCLRSQLFVAYRNGRVDEAVSLGFLDCWIGGDLTNFK 60
          MKVVGNYRVNTANSSTDTSGEHLTCLRSQLFVAYRNGRVDEAVSLGFLDCWIGGDLTNFK
Sbjct: 1  MKVVGNYRVNTANSSTDTSGEHLTCLRSQLFVAYRNGRVDEAVSLGFLDCWIGGDLTNFK 60

Query: 61 GCYLTNQLPIQIFTAIFDMNTDVI 84
          GCYLTNQLPIQ      D+ T VI
Sbjct: 61 GCYLTNQLPIQ------DIPTSVI 78


>gi|92110021 PQ loop repeat containing 2 isoform 1 [Homo sapiens]
          Length = 291

 Score = 68.2 bits (165), Expect = 1e-12
 Identities = 29/74 (39%), Positives = 49/74 (66%)

Query: 29  QLFVAYRNGRVDEAVSLGFLDCWIGGDLTNFKGCYLTNQLPIQIFTAIFDMNTDVIILSQ 88
           Q   AY+ G +D+A+SL FL  WIGGD  N  G +L +QLP+Q +TA++ +  D+++L+ 
Sbjct: 56  QFIKAYKTGNMDQALSLWFLLGWIGGDSCNLIGSFLADQLPLQTYTAVYYVLADLVMLTL 115

Query: 89  FMYYRLKNQKKKIS 102
           + YY+ + +   +S
Sbjct: 116 YFYYKFRTRPSLLS 129


>gi|92110025 PQ loop repeat containing 2 isoform 1 [Homo sapiens]
          Length = 291

 Score = 68.2 bits (165), Expect = 1e-12
 Identities = 29/74 (39%), Positives = 49/74 (66%)

Query: 29  QLFVAYRNGRVDEAVSLGFLDCWIGGDLTNFKGCYLTNQLPIQIFTAIFDMNTDVIILSQ 88
           Q   AY+ G +D+A+SL FL  WIGGD  N  G +L +QLP+Q +TA++ +  D+++L+ 
Sbjct: 56  QFIKAYKTGNMDQALSLWFLLGWIGGDSCNLIGSFLADQLPLQTYTAVYYVLADLVMLTL 115

Query: 89  FMYYRLKNQKKKIS 102
           + YY+ + +   +S
Sbjct: 116 YFYYKFRTRPSLLS 129


>gi|92110023 PQ loop repeat containing 2 isoform 2 [Homo sapiens]
          Length = 226

 Score = 59.7 bits (143), Expect = 5e-10
 Identities = 25/64 (39%), Positives = 44/64 (68%)

Query: 39  VDEAVSLGFLDCWIGGDLTNFKGCYLTNQLPIQIFTAIFDMNTDVIILSQFMYYRLKNQK 98
           +D+A+SL FL  WIGGD  N  G +L +QLP+Q +TA++ +  D+++L+ + YY+ + + 
Sbjct: 1   MDQALSLWFLLGWIGGDSCNLIGSFLADQLPLQTYTAVYYVLADLVMLTLYFYYKFRTRP 60

Query: 99  KKIS 102
             +S
Sbjct: 61  SLLS 64


>gi|111378393 sodium channel, voltage-gated, type VII, alpha [Homo
            sapiens]
          Length = 1682

 Score = 28.1 bits (61), Expect = 1.5
 Identities = 22/104 (21%), Positives = 45/104 (43%), Gaps = 10/104 (9%)

Query: 14   SSTDTSGEHLTCLRSQLFVAYRNGRVDEAVSLGFLDC---------WIGGDLTNFKGCYL 64
            S+ +T G  + CL      A  +G +D   +  + DC          + GD  N     +
Sbjct: 1415 SNFETFGNSMLCLFQVAIFAGWDGMLDAIFNSKWSDCDPDKINPGTQVRGDCGN-PSVGI 1473

Query: 65   TNQLPIQIFTAIFDMNTDVIILSQFMYYRLKNQKKKISEEDLRK 108
               +   + + +  +N  ++++ +F+    K + K +SE+D RK
Sbjct: 1474 FYFVSYILISWLIIVNMYIVVVMEFLNIASKKKNKTLSEDDFRK 1517


>gi|218751877 EF-hand calcium binding domain 1 isoform b [Homo
           sapiens]
          Length = 159

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 76  IFDMNTDVIILSQFMYYRLKNQ-KKKISEED 105
           +FD+N D  I  + M++ LKN   K+ SEED
Sbjct: 59  VFDLNGDGFISKEEMFHMLKNSLLKQPSEED 89


>gi|13375787 EF-hand calcium binding domain 1 isoform a [Homo
           sapiens]
          Length = 211

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 76  IFDMNTDVIILSQFMYYRLKNQ-KKKISEED 105
           +FD+N D  I  + M++ LKN   K+ SEED
Sbjct: 111 VFDLNGDGFISKEEMFHMLKNSLLKQPSEED 141


>gi|10880136 arrestin beta 1 isoform A [Homo sapiens]
          Length = 418

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 13/40 (32%), Positives = 17/40 (42%)

Query: 66  NQLPIQIFTAIFDMNTDVIILSQFMYYRLKNQKKKISEED 105
           N+ P+       D N D I+   F   RLK  K    EE+
Sbjct: 368 NETPVDTNLIELDTNDDDIVFEDFARQRLKGMKDDKEEEE 407


>gi|10880134 arrestin beta 1 isoform B [Homo sapiens]
          Length = 410

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 13/40 (32%), Positives = 17/40 (42%)

Query: 66  NQLPIQIFTAIFDMNTDVIILSQFMYYRLKNQKKKISEED 105
           N+ P+       D N D I+   F   RLK  K    EE+
Sbjct: 360 NETPVDTNLIELDTNDDDIVFEDFARQRLKGMKDDKEEEE 399


>gi|110611243 neurotensin receptor 1 [Homo sapiens]
          Length = 418

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 4/52 (7%)

Query: 20  GEHLT---CLRSQLFVAYRNG-RVDEAVSLGFLDCWIGGDLTNFKGCYLTNQ 67
           GEH T    +      A R+G RV  AV + F+ CW+   +     CY++++
Sbjct: 281 GEHSTFSMAIEPGRVQALRHGVRVLRAVVIAFVVCWLPYHVRRLMFCYISDE 332


>gi|134152674 rabaptin, RAB GTPase binding effector protein 1
           isoform 2 [Homo sapiens]
          Length = 829

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 3/28 (10%)

Query: 90  MYYRLKNQKKKISEED---LRKELHFCC 114
           MY  + N +K + +ED   LRKELH  C
Sbjct: 236 MYVAVLNTQKSVLQEDAEKLRKELHEVC 263


>gi|31377798 rabaptin, RAB GTPase binding effector protein 1 isoform
           1 [Homo sapiens]
          Length = 862

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 3/28 (10%)

Query: 90  MYYRLKNQKKKISEED---LRKELHFCC 114
           MY  + N +K + +ED   LRKELH  C
Sbjct: 236 MYVAVLNTQKSVLQEDAEKLRKELHEVC 263


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.325    0.139    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,075,878
Number of Sequences: 37866
Number of extensions: 143828
Number of successful extensions: 409
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 400
Number of HSP's gapped (non-prelim): 16
length of query: 118
length of database: 18,247,518
effective HSP length: 88
effective length of query: 30
effective length of database: 14,915,310
effective search space: 447459300
effective search space used: 447459300
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.