Guide to the Human Genome
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Search of human proteins with 148298677

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|148298677 hydroxymethylglutaryl-CoA synthase 1 [Homo
sapiens]
         (520 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|148298764 hydroxymethylglutaryl-CoA synthase 1 [Homo sapiens]     1053   0.0  
gi|148298677 hydroxymethylglutaryl-CoA synthase 1 [Homo sapiens]     1053   0.0  
gi|5031751 hydroxymethylglutaryl-CoA synthase 2 [Homo sapiens]        665   0.0  
gi|66346693 FAT tumor suppressor 1 precursor [Homo sapiens]            30   4.1  
gi|109715852 chromosome 6 open reading frame 204 isoform a [Homo...    30   7.0  
gi|87196347 zinc finger, B-box domain containing [Homo sapiens]        30   7.0  
gi|109715849 chromosome 6 open reading frame 204 isoform b [Homo...    30   7.0  
gi|226246608 RNA polymerase II associated protein 2 [Homo sapiens]     29   9.1  
gi|27886520 nuclear factor of activated T-cells 5 isoform a [Hom...    29   9.1  
gi|5729945 nuclear factor of activated T-cells 5 isoform c [Homo...    29   9.1  
gi|164419746 nuclear factor of activated T-cells 5 isoform d [Ho...    29   9.1  
gi|164419744 nuclear factor of activated T-cells 5 isoform b [Ho...    29   9.1  
gi|27886524 nuclear factor of activated T-cells 5 isoform a [Hom...    29   9.1  

>gi|148298764 hydroxymethylglutaryl-CoA synthase 1 [Homo sapiens]
          Length = 520

 Score = 1053 bits (2722), Expect = 0.0
 Identities = 520/520 (100%), Positives = 520/520 (100%)

Query: 1   MPGSLPLNAEACWPKDVGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQAKMGFCT 60
           MPGSLPLNAEACWPKDVGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQAKMGFCT
Sbjct: 1   MPGSLPLNAEACWPKDVGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQAKMGFCT 60

Query: 61  DREDINSLCMTVVQNLMERNNLSYDCIGRLEVGTETIIDKSKSVKTNLMQLFEESGNTDI 120
           DREDINSLCMTVVQNLMERNNLSYDCIGRLEVGTETIIDKSKSVKTNLMQLFEESGNTDI
Sbjct: 61  DREDINSLCMTVVQNLMERNNLSYDCIGRLEVGTETIIDKSKSVKTNLMQLFEESGNTDI 120

Query: 121 EGIDTTNACYGGTAAVFNAVNWIESSSWDGRYALVVAGDIAVYATGNARPTGGVGAVALL 180
           EGIDTTNACYGGTAAVFNAVNWIESSSWDGRYALVVAGDIAVYATGNARPTGGVGAVALL
Sbjct: 121 EGIDTTNACYGGTAAVFNAVNWIESSSWDGRYALVVAGDIAVYATGNARPTGGVGAVALL 180

Query: 181 IGPNAPLIFERGLRGTHMQHAYDFYKPDMLSEYPIVDGKLSIQCYLSALDRCYSVYCKKI 240
           IGPNAPLIFERGLRGTHMQHAYDFYKPDMLSEYPIVDGKLSIQCYLSALDRCYSVYCKKI
Sbjct: 181 IGPNAPLIFERGLRGTHMQHAYDFYKPDMLSEYPIVDGKLSIQCYLSALDRCYSVYCKKI 240

Query: 241 HAQWQKEGNDKDFTLNDFGFMIFHSPYCKLVQKSLARMLLNDFLNDQNRDKNSIYSGLEA 300
           HAQWQKEGNDKDFTLNDFGFMIFHSPYCKLVQKSLARMLLNDFLNDQNRDKNSIYSGLEA
Sbjct: 241 HAQWQKEGNDKDFTLNDFGFMIFHSPYCKLVQKSLARMLLNDFLNDQNRDKNSIYSGLEA 300

Query: 301 FGDVKLEDTYFDRDVEKAFMKASSELFSQKTKASLLVSNQNGNMYTSSVYGSLASVLAQY 360
           FGDVKLEDTYFDRDVEKAFMKASSELFSQKTKASLLVSNQNGNMYTSSVYGSLASVLAQY
Sbjct: 301 FGDVKLEDTYFDRDVEKAFMKASSELFSQKTKASLLVSNQNGNMYTSSVYGSLASVLAQY 360

Query: 361 SPQQLAGKRIGVFSYGSGLAATLYSLKVTQDATPGSALDKITASLCDLKSRLDSRTGVAP 420
           SPQQLAGKRIGVFSYGSGLAATLYSLKVTQDATPGSALDKITASLCDLKSRLDSRTGVAP
Sbjct: 361 SPQQLAGKRIGVFSYGSGLAATLYSLKVTQDATPGSALDKITASLCDLKSRLDSRTGVAP 420

Query: 421 DVFAENMKLREDTHHLVNYIPQGSIDSLFEGTWYLVRVDEKHRRTYARRPTPNDDTLDEG 480
           DVFAENMKLREDTHHLVNYIPQGSIDSLFEGTWYLVRVDEKHRRTYARRPTPNDDTLDEG
Sbjct: 421 DVFAENMKLREDTHHLVNYIPQGSIDSLFEGTWYLVRVDEKHRRTYARRPTPNDDTLDEG 480

Query: 481 VGLVHSNIATEHIPSPAKKVPRLPATAAEPEAAVISNGEH 520
           VGLVHSNIATEHIPSPAKKVPRLPATAAEPEAAVISNGEH
Sbjct: 481 VGLVHSNIATEHIPSPAKKVPRLPATAAEPEAAVISNGEH 520


>gi|148298677 hydroxymethylglutaryl-CoA synthase 1 [Homo sapiens]
          Length = 520

 Score = 1053 bits (2722), Expect = 0.0
 Identities = 520/520 (100%), Positives = 520/520 (100%)

Query: 1   MPGSLPLNAEACWPKDVGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQAKMGFCT 60
           MPGSLPLNAEACWPKDVGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQAKMGFCT
Sbjct: 1   MPGSLPLNAEACWPKDVGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQAKMGFCT 60

Query: 61  DREDINSLCMTVVQNLMERNNLSYDCIGRLEVGTETIIDKSKSVKTNLMQLFEESGNTDI 120
           DREDINSLCMTVVQNLMERNNLSYDCIGRLEVGTETIIDKSKSVKTNLMQLFEESGNTDI
Sbjct: 61  DREDINSLCMTVVQNLMERNNLSYDCIGRLEVGTETIIDKSKSVKTNLMQLFEESGNTDI 120

Query: 121 EGIDTTNACYGGTAAVFNAVNWIESSSWDGRYALVVAGDIAVYATGNARPTGGVGAVALL 180
           EGIDTTNACYGGTAAVFNAVNWIESSSWDGRYALVVAGDIAVYATGNARPTGGVGAVALL
Sbjct: 121 EGIDTTNACYGGTAAVFNAVNWIESSSWDGRYALVVAGDIAVYATGNARPTGGVGAVALL 180

Query: 181 IGPNAPLIFERGLRGTHMQHAYDFYKPDMLSEYPIVDGKLSIQCYLSALDRCYSVYCKKI 240
           IGPNAPLIFERGLRGTHMQHAYDFYKPDMLSEYPIVDGKLSIQCYLSALDRCYSVYCKKI
Sbjct: 181 IGPNAPLIFERGLRGTHMQHAYDFYKPDMLSEYPIVDGKLSIQCYLSALDRCYSVYCKKI 240

Query: 241 HAQWQKEGNDKDFTLNDFGFMIFHSPYCKLVQKSLARMLLNDFLNDQNRDKNSIYSGLEA 300
           HAQWQKEGNDKDFTLNDFGFMIFHSPYCKLVQKSLARMLLNDFLNDQNRDKNSIYSGLEA
Sbjct: 241 HAQWQKEGNDKDFTLNDFGFMIFHSPYCKLVQKSLARMLLNDFLNDQNRDKNSIYSGLEA 300

Query: 301 FGDVKLEDTYFDRDVEKAFMKASSELFSQKTKASLLVSNQNGNMYTSSVYGSLASVLAQY 360
           FGDVKLEDTYFDRDVEKAFMKASSELFSQKTKASLLVSNQNGNMYTSSVYGSLASVLAQY
Sbjct: 301 FGDVKLEDTYFDRDVEKAFMKASSELFSQKTKASLLVSNQNGNMYTSSVYGSLASVLAQY 360

Query: 361 SPQQLAGKRIGVFSYGSGLAATLYSLKVTQDATPGSALDKITASLCDLKSRLDSRTGVAP 420
           SPQQLAGKRIGVFSYGSGLAATLYSLKVTQDATPGSALDKITASLCDLKSRLDSRTGVAP
Sbjct: 361 SPQQLAGKRIGVFSYGSGLAATLYSLKVTQDATPGSALDKITASLCDLKSRLDSRTGVAP 420

Query: 421 DVFAENMKLREDTHHLVNYIPQGSIDSLFEGTWYLVRVDEKHRRTYARRPTPNDDTLDEG 480
           DVFAENMKLREDTHHLVNYIPQGSIDSLFEGTWYLVRVDEKHRRTYARRPTPNDDTLDEG
Sbjct: 421 DVFAENMKLREDTHHLVNYIPQGSIDSLFEGTWYLVRVDEKHRRTYARRPTPNDDTLDEG 480

Query: 481 VGLVHSNIATEHIPSPAKKVPRLPATAAEPEAAVISNGEH 520
           VGLVHSNIATEHIPSPAKKVPRLPATAAEPEAAVISNGEH
Sbjct: 481 VGLVHSNIATEHIPSPAKKVPRLPATAAEPEAAVISNGEH 520


>gi|5031751 hydroxymethylglutaryl-CoA synthase 2 [Homo sapiens]
          Length = 508

 Score =  665 bits (1717), Expect = 0.0
 Identities = 315/467 (67%), Positives = 387/467 (82%)

Query: 4   SLPLNAEACWPKDVGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQAKMGFCTDRE 63
           ++PL     WPKDVGI+ALE+YFP+QYVDQ +LEKY+ V+AGKYT+GLGQ +MGFC+ +E
Sbjct: 41  AVPLAKTDTWPKDVGILALEVYFPAQYVDQTDLEKYNNVEAGKYTVGLGQTRMGFCSVQE 100

Query: 64  DINSLCMTVVQNLMERNNLSYDCIGRLEVGTETIIDKSKSVKTNLMQLFEESGNTDIEGI 123
           DINSLC+TVVQ LMER  L +D +GRLEVGTETIIDKSK+VKT LM+LF++SGNTDIEGI
Sbjct: 101 DINSLCLTVVQRLMERIQLPWDSVGRLEVGTETIIDKSKAVKTVLMELFQDSGNTDIEGI 160

Query: 124 DTTNACYGGTAAVFNAVNWIESSSWDGRYALVVAGDIAVYATGNARPTGGVGAVALLIGP 183
           DTTNACYGGTA++FNA NW+ESSSWDGRYA+VV GDIAVY +GNARPTGG GAVA+LIGP
Sbjct: 161 DTTNACYGGTASLFNAANWMESSSWDGRYAMVVCGDIAVYPSGNARPTGGAGAVAMLIGP 220

Query: 184 NAPLIFERGLRGTHMQHAYDFYKPDMLSEYPIVDGKLSIQCYLSALDRCYSVYCKKIHAQ 243
            APL  ERGLRGTHM++ YDFYKP++ SEYPIVDGKLSIQCYL ALDRCY+ Y KKI  Q
Sbjct: 221 KAPLALERGLRGTHMENVYDFYKPNLASEYPIVDGKLSIQCYLRALDRCYTSYRKKIQNQ 280

Query: 244 WQKEGNDKDFTLNDFGFMIFHSPYCKLVQKSLARMLLNDFLNDQNRDKNSIYSGLEAFGD 303
           W++ G+D+ FTL+D  +MIFH+P+CK+VQKSLAR++ NDFL+  +  + S+Y GLEAFG 
Sbjct: 281 WKQAGSDRPFTLDDLQYMIFHTPFCKMVQKSLARLMFNDFLSASSDTQTSLYKGLEAFGG 340

Query: 304 VKLEDTYFDRDVEKAFMKASSELFSQKTKASLLVSNQNGNMYTSSVYGSLASVLAQYSPQ 363
           +KLEDTY ++D++KA +KAS ++F +KTKASL +S  NGNMYTSS+YG LAS+L+ +S Q
Sbjct: 341 LKLEDTYTNKDLDKALLKASQDMFDKKTKASLYLSTHNGNMYTSSLYGCLASLLSHHSAQ 400

Query: 364 QLAGKRIGVFSYGSGLAATLYSLKVTQDATPGSALDKITASLCDLKSRLDSRTGVAPDVF 423
           +LAG RIG FSYGSGLAA+ +S +V+QDA PGS LDK+ +S  DL  RL SR  V+P+ F
Sbjct: 401 ELAGSRIGAFSYGSGLAASFFSFRVSQDAAPGSPLDKLVSSTSDLPKRLASRKCVSPEEF 460

Query: 424 AENMKLREDTHHLVNYIPQGSIDSLFEGTWYLVRVDEKHRRTYARRP 470
            E M  RE  +H VN+ P G  +SLF GTWYL RVDE+HRR YARRP
Sbjct: 461 TEIMNQREQFYHKVNFSPPGDTNSLFPGTWYLERVDEQHRRKYARRP 507


>gi|66346693 FAT tumor suppressor 1 precursor [Homo sapiens]
          Length = 4588

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 382  TLYSLKVTQDATPGSALDKITASLCDLKSRLDSRTGVAPDVFAENMKLREDTHHLVNYIP 441
            TLYS  + +D  PG  + +I+A+  D++S  +  T       AE  KL  DT  L    P
Sbjct: 3026 TLYSDTIPEDVLPGKLIMQISATDADIRSNAEI-TYTLLGSGAEKFKLNPDTGELKTSTP 3084


>gi|109715852 chromosome 6 open reading frame 204 isoform a [Homo
           sapiens]
          Length = 805

 Score = 29.6 bits (65), Expect = 7.0
 Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 7/68 (10%)

Query: 450 EGTWYLVRVDEKHRRTYARRPTPNDDTLDEGVGLVHSNIATEHIPS-------PAKKVPR 502
           E  W    V   HR  + RR +   D+ D G+G   S+   +H  S       P++ +  
Sbjct: 37  ESLWQATTVPSNHRNNHIRRHSIASDSGDTGIGTSCSDSVEDHSTSSGTLSFKPSQSLIT 96

Query: 503 LPATAAEP 510
           LP     P
Sbjct: 97  LPTAHVMP 104


>gi|87196347 zinc finger, B-box domain containing [Homo sapiens]
          Length = 800

 Score = 29.6 bits (65), Expect = 7.0
 Identities = 31/145 (21%), Positives = 55/145 (37%), Gaps = 27/145 (18%)

Query: 195 GTHMQHAYDFYKPDMLSEYPIVDGKLSIQCYLSALDRCYSVYCKKIHAQWQKEGNDKDFT 254
           G H  H +D  K D L+                         C +  + + K+ +  + +
Sbjct: 441 GIHQHHVFDKGKRDFLN------------------------LCLRNSSTYYKDNSKAETS 476

Query: 255 LNDFGFMIFHSPYCKLVQKSLARMLLNDFLNDQNRDKNSIYSGLEAFGDVKLEDTYFDRD 314
             DF  ++    Y   ++K          L ++N    S     ++   ++ +DT   RD
Sbjct: 477 NTDFDNIVDPDVYSSDIEKIEESTSFERNLKEKNIGLESNQKSDDSCVSLESKDTLLGRD 536

Query: 315 VEKAFMKASSELFSQKTKASLLVSN 339
           +EKA ++   E  SQ  K SL +SN
Sbjct: 537 LEKAPIE---EKLSQDIKESLELSN 558


>gi|109715849 chromosome 6 open reading frame 204 isoform b [Homo
           sapiens]
          Length = 496

 Score = 29.6 bits (65), Expect = 7.0
 Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 7/68 (10%)

Query: 450 EGTWYLVRVDEKHRRTYARRPTPNDDTLDEGVGLVHSNIATEHIPS-------PAKKVPR 502
           E  W    V   HR  + RR +   D+ D G+G   S+   +H  S       P++ +  
Sbjct: 37  ESLWQATTVPSNHRNNHIRRHSIASDSGDTGIGTSCSDSVEDHSTSSGTLSFKPSQSLIT 96

Query: 503 LPATAAEP 510
           LP     P
Sbjct: 97  LPTAHVMP 104


>gi|226246608 RNA polymerase II associated protein 2 [Homo sapiens]
          Length = 612

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 1/74 (1%)

Query: 269 KLVQKSLARMLLNDFLNDQNRDKN-SIYSGLEAFGDVKLEDTYFDRDVEKAFMKASSELF 327
           +L QKS+ +       N +++DK  ++    E  GD KL+    D   E    K +++  
Sbjct: 241 QLHQKSIMKKKAGHKANSKHKDKEQTVVDVTEQLGDCKLDSQEKDATCELPLQKVNTQSS 300

Query: 328 SQKTKASLLVSNQN 341
           S  T    L +++N
Sbjct: 301 SNSTLPERLKASEN 314


>gi|27886520 nuclear factor of activated T-cells 5 isoform a [Homo
           sapiens]
          Length = 1455

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 11/122 (9%)

Query: 284 LNDQNRDKNSIYSGLEAFGDVKLEDTYFDRDVEKAFMKASSELFSQKTKASLLVSNQNGN 343
           L++Q + +      +E+   + +E     + + +A  +  SELF     A       NGN
Sbjct: 800 LSNQQQQQQQQQQVMESSAAMVME---MQQSICQAAAQIQSELFPSTASA-------NGN 849

Query: 344 MYTSSVYGSLASVLAQYSPQQLAGKRIGVFSYGSGLAATLYSLKVTQD-ATPGSALDKIT 402
           +  S VY   + +++  S  +    +  +FS    ++    S   TQ  ATPG+ + + +
Sbjct: 850 LQQSPVYQQTSHMMSALSTNEDMQMQCELFSSPPAVSGNETSTTTTQQVATPGTTMFQTS 909

Query: 403 AS 404
           +S
Sbjct: 910 SS 911


>gi|5729945 nuclear factor of activated T-cells 5 isoform c [Homo
           sapiens]
          Length = 1531

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 11/122 (9%)

Query: 284 LNDQNRDKNSIYSGLEAFGDVKLEDTYFDRDVEKAFMKASSELFSQKTKASLLVSNQNGN 343
           L++Q + +      +E+   + +E     + + +A  +  SELF     A       NGN
Sbjct: 876 LSNQQQQQQQQQQVMESSAAMVME---MQQSICQAAAQIQSELFPSTASA-------NGN 925

Query: 344 MYTSSVYGSLASVLAQYSPQQLAGKRIGVFSYGSGLAATLYSLKVTQD-ATPGSALDKIT 402
           +  S VY   + +++  S  +    +  +FS    ++    S   TQ  ATPG+ + + +
Sbjct: 926 LQQSPVYQQTSHMMSALSTNEDMQMQCELFSSPPAVSGNETSTTTTQQVATPGTTMFQTS 985

Query: 403 AS 404
           +S
Sbjct: 986 SS 987


>gi|164419746 nuclear factor of activated T-cells 5 isoform d [Homo
            sapiens]
          Length = 1548

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 11/122 (9%)

Query: 284  LNDQNRDKNSIYSGLEAFGDVKLEDTYFDRDVEKAFMKASSELFSQKTKASLLVSNQNGN 343
            L++Q + +      +E+   + +E     + + +A  +  SELF     A       NGN
Sbjct: 893  LSNQQQQQQQQQQVMESSAAMVME---MQQSICQAAAQIQSELFPSTASA-------NGN 942

Query: 344  MYTSSVYGSLASVLAQYSPQQLAGKRIGVFSYGSGLAATLYSLKVTQD-ATPGSALDKIT 402
            +  S VY   + +++  S  +    +  +FS    ++    S   TQ  ATPG+ + + +
Sbjct: 943  LQQSPVYQQTSHMMSALSTNEDMQMQCELFSSPPAVSGNETSTTTTQQVATPGTTMFQTS 1002

Query: 403  AS 404
            +S
Sbjct: 1003 SS 1004


>gi|164419744 nuclear factor of activated T-cells 5 isoform b [Homo
            sapiens]
          Length = 1549

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 11/122 (9%)

Query: 284  LNDQNRDKNSIYSGLEAFGDVKLEDTYFDRDVEKAFMKASSELFSQKTKASLLVSNQNGN 343
            L++Q + +      +E+   + +E     + + +A  +  SELF     A       NGN
Sbjct: 894  LSNQQQQQQQQQQVMESSAAMVME---MQQSICQAAAQIQSELFPSTASA-------NGN 943

Query: 344  MYTSSVYGSLASVLAQYSPQQLAGKRIGVFSYGSGLAATLYSLKVTQD-ATPGSALDKIT 402
            +  S VY   + +++  S  +    +  +FS    ++    S   TQ  ATPG+ + + +
Sbjct: 944  LQQSPVYQQTSHMMSALSTNEDMQMQCELFSSPPAVSGNETSTTTTQQVATPGTTMFQTS 1003

Query: 403  AS 404
            +S
Sbjct: 1004 SS 1005


>gi|27886524 nuclear factor of activated T-cells 5 isoform a [Homo
           sapiens]
          Length = 1455

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 11/122 (9%)

Query: 284 LNDQNRDKNSIYSGLEAFGDVKLEDTYFDRDVEKAFMKASSELFSQKTKASLLVSNQNGN 343
           L++Q + +      +E+   + +E     + + +A  +  SELF     A       NGN
Sbjct: 800 LSNQQQQQQQQQQVMESSAAMVME---MQQSICQAAAQIQSELFPSTASA-------NGN 849

Query: 344 MYTSSVYGSLASVLAQYSPQQLAGKRIGVFSYGSGLAATLYSLKVTQD-ATPGSALDKIT 402
           +  S VY   + +++  S  +    +  +FS    ++    S   TQ  ATPG+ + + +
Sbjct: 850 LQQSPVYQQTSHMMSALSTNEDMQMQCELFSSPPAVSGNETSTTTTQQVATPGTTMFQTS 909

Query: 403 AS 404
           +S
Sbjct: 910 SS 911


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.134    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,103,970
Number of Sequences: 37866
Number of extensions: 841686
Number of successful extensions: 1816
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1813
Number of HSP's gapped (non-prelim): 13
length of query: 520
length of database: 18,247,518
effective HSP length: 107
effective length of query: 413
effective length of database: 14,195,856
effective search space: 5862888528
effective search space used: 5862888528
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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