Guide to the Human Genome
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Search of human proteins with 148277046

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|148277046 angiogenin, ribonuclease, RNase A family, 5
precursor [Homo sapiens]
         (147 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|148277046 angiogenin, ribonuclease, RNase A family, 5 precurs...   312   7e-86
gi|4557313 angiogenin, ribonuclease, RNase A family, 5 precursor...   312   7e-86
gi|4506557 ribonuclease, RNase A family, 4 precursor [Homo sapiens]    99   1e-21
gi|37577172 ribonuclease, RNase A family, 4 precursor [Homo sapi...    99   1e-21
gi|38201686 pancreatic ribonuclease precursor [Homo sapiens]           88   3e-18
gi|38201684 pancreatic ribonuclease precursor [Homo sapiens]           88   3e-18
gi|4506547 pancreatic ribonuclease precursor [Homo sapiens]            88   3e-18
gi|38201682 pancreatic ribonuclease precursor [Homo sapiens]           88   3e-18
gi|153252081 ribonuclease, RNase A family, 7 [Homo sapiens]            59   1e-09
gi|5032045 ribonuclease, RNase A family, k6 [Homo sapiens]             51   3e-07
gi|21687143 ribonuclease, RNase A family, 8 [Homo sapiens]             45   2e-05
gi|67459908 ribonuclease, RNase A family, 12 (non-active) [Homo ...    45   2e-05
gi|4506549 ribonuclease, RNase A family, 2 (liver, eosinophil-de...    40   7e-04
gi|59276062 ribonuclease, RNase A family, 13 (non-active) [Homo ...    40   7e-04
gi|45243507 ribonuclease, RNase A family, 3 (eosinophil cationic...    37   0.005
gi|61175227 ribonuclease, RNase A family, 10 (non-active) [Homo ...    34   0.038
gi|167857788 MHC class I polypeptide-related sequence B [Homo sa...    29   1.2  
gi|46249414 latent transforming growth factor beta binding prote...    29   1.6  
gi|46249412 latent transforming growth factor beta binding prote...    29   1.6  
gi|110611170 ADAM metallopeptidase with thrombospondin type 1 mo...    28   3.6  
gi|27886568 interferon induced with helicase C domain 1 [Homo sa...    27   4.7  
gi|46409306 family with sequence similarity 43, member B [Homo s...    27   4.7  
gi|147904700 semaphorin 5A [Homo sapiens]                              27   8.0  
gi|9966847 hypothetical protein LOC57102 [Homo sapiens]                27   8.0  

>gi|148277046 angiogenin, ribonuclease, RNase A family, 5 precursor
           [Homo sapiens]
          Length = 147

 Score =  312 bits (799), Expect = 7e-86
 Identities = 147/147 (100%), Positives = 147/147 (100%)

Query: 1   MVMGLGVLLLVFVLGLGLTPPTLAQDNSRYTHFLTQHYDAKPQGRDDRYCESIMRRRGLT 60
           MVMGLGVLLLVFVLGLGLTPPTLAQDNSRYTHFLTQHYDAKPQGRDDRYCESIMRRRGLT
Sbjct: 1   MVMGLGVLLLVFVLGLGLTPPTLAQDNSRYTHFLTQHYDAKPQGRDDRYCESIMRRRGLT 60

Query: 61  SPCKDINTFIHGNKRSIKAICENKNGNPHRENLRISKSSFQVTTCKLHGGSPWPPCQYRA 120
           SPCKDINTFIHGNKRSIKAICENKNGNPHRENLRISKSSFQVTTCKLHGGSPWPPCQYRA
Sbjct: 61  SPCKDINTFIHGNKRSIKAICENKNGNPHRENLRISKSSFQVTTCKLHGGSPWPPCQYRA 120

Query: 121 TAGFRNVVVACENGLPVHLDQSIFRRP 147
           TAGFRNVVVACENGLPVHLDQSIFRRP
Sbjct: 121 TAGFRNVVVACENGLPVHLDQSIFRRP 147


>gi|4557313 angiogenin, ribonuclease, RNase A family, 5 precursor
           [Homo sapiens]
          Length = 147

 Score =  312 bits (799), Expect = 7e-86
 Identities = 147/147 (100%), Positives = 147/147 (100%)

Query: 1   MVMGLGVLLLVFVLGLGLTPPTLAQDNSRYTHFLTQHYDAKPQGRDDRYCESIMRRRGLT 60
           MVMGLGVLLLVFVLGLGLTPPTLAQDNSRYTHFLTQHYDAKPQGRDDRYCESIMRRRGLT
Sbjct: 1   MVMGLGVLLLVFVLGLGLTPPTLAQDNSRYTHFLTQHYDAKPQGRDDRYCESIMRRRGLT 60

Query: 61  SPCKDINTFIHGNKRSIKAICENKNGNPHRENLRISKSSFQVTTCKLHGGSPWPPCQYRA 120
           SPCKDINTFIHGNKRSIKAICENKNGNPHRENLRISKSSFQVTTCKLHGGSPWPPCQYRA
Sbjct: 61  SPCKDINTFIHGNKRSIKAICENKNGNPHRENLRISKSSFQVTTCKLHGGSPWPPCQYRA 120

Query: 121 TAGFRNVVVACENGLPVHLDQSIFRRP 147
           TAGFRNVVVACENGLPVHLDQSIFRRP
Sbjct: 121 TAGFRNVVVACENGLPVHLDQSIFRRP 147


>gi|4506557 ribonuclease, RNase A family, 4 precursor [Homo sapiens]
          Length = 147

 Score = 99.4 bits (246), Expect = 1e-21
 Identities = 57/137 (41%), Positives = 76/137 (55%), Gaps = 4/137 (2%)

Query: 7   VLLLVFVLGLGLTPPTLAQDNSRYTHFLTQHYDAKPQGRDDRYCESIMRRRGLTS-PCKD 65
           +LLL+ +LGLGL  P+  QD   Y  FL QH   +  G  DRYC  +M+RR +T   CK 
Sbjct: 11  LLLLLTLLGLGLVQPSYGQDGM-YQRFLRQHVHPEETGGSDRYCNLMMQRRKMTLYHCKR 69

Query: 66  INTFIHGNKRSIKAICENKNGNPHRENLRISKSSFQVTTCKLHGGSPWPPCQYRATAGFR 125
            NTFIH +  +I++IC   N       +   +   +VT C+  G S  P C+YRA A  R
Sbjct: 70  FNTFIHEDIWNIRSICSTTNIQCKNGKMNCHEGVVKVTDCRDTGSSRAPNCRYRAIASTR 129

Query: 126 NVVVACENG--LPVHLD 140
            VV+ACE    +PVH D
Sbjct: 130 RVVIACEGNPQVPVHFD 146


>gi|37577172 ribonuclease, RNase A family, 4 precursor [Homo
           sapiens]
          Length = 147

 Score = 99.4 bits (246), Expect = 1e-21
 Identities = 57/137 (41%), Positives = 76/137 (55%), Gaps = 4/137 (2%)

Query: 7   VLLLVFVLGLGLTPPTLAQDNSRYTHFLTQHYDAKPQGRDDRYCESIMRRRGLTS-PCKD 65
           +LLL+ +LGLGL  P+  QD   Y  FL QH   +  G  DRYC  +M+RR +T   CK 
Sbjct: 11  LLLLLTLLGLGLVQPSYGQDGM-YQRFLRQHVHPEETGGSDRYCNLMMQRRKMTLYHCKR 69

Query: 66  INTFIHGNKRSIKAICENKNGNPHRENLRISKSSFQVTTCKLHGGSPWPPCQYRATAGFR 125
            NTFIH +  +I++IC   N       +   +   +VT C+  G S  P C+YRA A  R
Sbjct: 70  FNTFIHEDIWNIRSICSTTNIQCKNGKMNCHEGVVKVTDCRDTGSSRAPNCRYRAIASTR 129

Query: 126 NVVVACENG--LPVHLD 140
            VV+ACE    +PVH D
Sbjct: 130 RVVIACEGNPQVPVHFD 146


>gi|38201686 pancreatic ribonuclease precursor [Homo sapiens]
          Length = 156

 Score = 87.8 bits (216), Expect = 3e-18
 Identities = 53/148 (35%), Positives = 78/148 (52%), Gaps = 17/148 (11%)

Query: 7   VLLLVFVLGLGLTPPTLAQDNSRYTHFLTQHYDAKPQ-GRDDRYCESIMRRRGLTSP-CK 64
           +LL++ +L LG   P+L ++ SR   F  QH D+         YC  +MRRR +T   CK
Sbjct: 11  LLLVLILLVLGWVQPSLGKE-SRAKKFQRQHMDSDSSPSSSSTYCNQMMRRRNMTQGRCK 69

Query: 65  DINTFIHGNKRSI-------KAICENKNGNPHRENLRISKSSFQVTTCKLHGGSPWPPCQ 117
            +NTF+H     +       K  C+N  GN ++ N     SS  +T C+L  GS +P C 
Sbjct: 70  PVNTFVHEPLVDVQNVCFQEKVTCKNGQGNCYKSN-----SSMHITDCRLTNGSRYPNCA 124

Query: 118 YRATAGFRNVVVACENG--LPVHLDQSI 143
           YR +   R+++VACE    +PVH D S+
Sbjct: 125 YRTSPKERHIIVACEGSPYVPVHFDASV 152


>gi|38201684 pancreatic ribonuclease precursor [Homo sapiens]
          Length = 156

 Score = 87.8 bits (216), Expect = 3e-18
 Identities = 53/148 (35%), Positives = 78/148 (52%), Gaps = 17/148 (11%)

Query: 7   VLLLVFVLGLGLTPPTLAQDNSRYTHFLTQHYDAKPQ-GRDDRYCESIMRRRGLTSP-CK 64
           +LL++ +L LG   P+L ++ SR   F  QH D+         YC  +MRRR +T   CK
Sbjct: 11  LLLVLILLVLGWVQPSLGKE-SRAKKFQRQHMDSDSSPSSSSTYCNQMMRRRNMTQGRCK 69

Query: 65  DINTFIHGNKRSI-------KAICENKNGNPHRENLRISKSSFQVTTCKLHGGSPWPPCQ 117
            +NTF+H     +       K  C+N  GN ++ N     SS  +T C+L  GS +P C 
Sbjct: 70  PVNTFVHEPLVDVQNVCFQEKVTCKNGQGNCYKSN-----SSMHITDCRLTNGSRYPNCA 124

Query: 118 YRATAGFRNVVVACENG--LPVHLDQSI 143
           YR +   R+++VACE    +PVH D S+
Sbjct: 125 YRTSPKERHIIVACEGSPYVPVHFDASV 152


>gi|4506547 pancreatic ribonuclease precursor [Homo sapiens]
          Length = 156

 Score = 87.8 bits (216), Expect = 3e-18
 Identities = 53/148 (35%), Positives = 78/148 (52%), Gaps = 17/148 (11%)

Query: 7   VLLLVFVLGLGLTPPTLAQDNSRYTHFLTQHYDAKPQ-GRDDRYCESIMRRRGLTSP-CK 64
           +LL++ +L LG   P+L ++ SR   F  QH D+         YC  +MRRR +T   CK
Sbjct: 11  LLLVLILLVLGWVQPSLGKE-SRAKKFQRQHMDSDSSPSSSSTYCNQMMRRRNMTQGRCK 69

Query: 65  DINTFIHGNKRSI-------KAICENKNGNPHRENLRISKSSFQVTTCKLHGGSPWPPCQ 117
            +NTF+H     +       K  C+N  GN ++ N     SS  +T C+L  GS +P C 
Sbjct: 70  PVNTFVHEPLVDVQNVCFQEKVTCKNGQGNCYKSN-----SSMHITDCRLTNGSRYPNCA 124

Query: 118 YRATAGFRNVVVACENG--LPVHLDQSI 143
           YR +   R+++VACE    +PVH D S+
Sbjct: 125 YRTSPKERHIIVACEGSPYVPVHFDASV 152


>gi|38201682 pancreatic ribonuclease precursor [Homo sapiens]
          Length = 156

 Score = 87.8 bits (216), Expect = 3e-18
 Identities = 53/148 (35%), Positives = 78/148 (52%), Gaps = 17/148 (11%)

Query: 7   VLLLVFVLGLGLTPPTLAQDNSRYTHFLTQHYDAKPQ-GRDDRYCESIMRRRGLTSP-CK 64
           +LL++ +L LG   P+L ++ SR   F  QH D+         YC  +MRRR +T   CK
Sbjct: 11  LLLVLILLVLGWVQPSLGKE-SRAKKFQRQHMDSDSSPSSSSTYCNQMMRRRNMTQGRCK 69

Query: 65  DINTFIHGNKRSI-------KAICENKNGNPHRENLRISKSSFQVTTCKLHGGSPWPPCQ 117
            +NTF+H     +       K  C+N  GN ++ N     SS  +T C+L  GS +P C 
Sbjct: 70  PVNTFVHEPLVDVQNVCFQEKVTCKNGQGNCYKSN-----SSMHITDCRLTNGSRYPNCA 124

Query: 118 YRATAGFRNVVVACENG--LPVHLDQSI 143
           YR +   R+++VACE    +PVH D S+
Sbjct: 125 YRTSPKERHIIVACEGSPYVPVHFDASV 152


>gi|153252081 ribonuclease, RNase A family, 7 [Homo sapiens]
          Length = 156

 Score = 59.3 bits (142), Expect = 1e-09
 Identities = 49/157 (31%), Positives = 72/157 (45%), Gaps = 28/157 (17%)

Query: 4   GLGVLLLVFVLGLGLTPPTLAQDNSRYTH---FLTQHYDAKPQGRDDRYCESIMRRRGL- 59
           G   LLL+ +LGL +    ++      T    F  QH    PQ      C S M+     
Sbjct: 7   GFCPLLLLLLLGLWVAEIPVSAKPKGMTSSQWFKIQHMQPSPQA-----CNSAMKNINKH 61

Query: 60  TSPCKDINTFIHGNKRSIKAICEN-----KNGNPHRENLRISKSSFQVTTCKLHGGSPWP 114
           T  CKD+NTF+H    S+ A C+      KNG+   +N   S  +  +T CKL  G  +P
Sbjct: 62  TKRCKDLNTFLHEPFSSVAATCQTPKIACKNGD---KNCHQSHGAVSLTMCKLTSGK-YP 117

Query: 115 PCQYRATAGFRNVVVACE----------NGLPVHLDQ 141
            C+Y+     ++ VVAC+          + +PVHLD+
Sbjct: 118 NCRYKEKRQNKSYVVACKPPQKKDSQQFHLVPVHLDR 154


>gi|5032045 ribonuclease, RNase A family, k6 [Homo sapiens]
          Length = 150

 Score = 51.2 bits (121), Expect = 3e-07
 Identities = 44/153 (28%), Positives = 65/153 (42%), Gaps = 19/153 (12%)

Query: 1   MVMGLGVLLLVFVLGLGLTPPTLAQDNSRYTH-FLTQHYDAKPQGRDDRYCESIMRR-RG 58
           MV+   +LLL+ VL   + P           H F  QH    P       C   M     
Sbjct: 1   MVLCFPLLLLLLVLWGPVCPLHAWPKRLTKAHWFEIQHIQPSPL-----QCNRAMSGINN 55

Query: 59  LTSPCKDINTFIHGNKRSIKAICENKN--GNPHRENLRISKSSFQVTTCKLHGGSPWPPC 116
            T  CK  NTF+H + +++ A+C+  +      R N   S     +T C+L  G  +P C
Sbjct: 56  YTQHCKHQNTFLHDSFQNVAAVCDLLSIVCKNRRHNCHQSSKPVNMTDCRLTSGK-YPQC 114

Query: 117 QYRATAGFRNVVVACE---------NGLPVHLD 140
           +Y A A ++  +VAC+           +PVHLD
Sbjct: 115 RYSAAAQYKFFIVACDPPQKSDPPYKLVPVHLD 147


>gi|21687143 ribonuclease, RNase A family, 8 [Homo sapiens]
          Length = 154

 Score = 45.4 bits (106), Expect = 2e-05
 Identities = 42/150 (28%), Positives = 63/150 (42%), Gaps = 21/150 (14%)

Query: 9   LLVFVLGLGLTPPTLA---QDNSRYTHFLTQHYDAKPQGRDDRYCESIMRR-RGLTSPCK 64
           LL+ +LGL +    +    +D +    F TQH    PQ      C S M      T  CK
Sbjct: 11  LLLLLLGLWVAEVLVRAKPKDMTSSQWFKTQHVQPSPQA-----CNSAMSIINKYTERCK 65

Query: 65  DINTFIHGNKRSIKAICENKN--GNPHRENLRISKSSFQVTTCKLHGGSPWPPCQYRATA 122
           D+NTF+H    S+   C+  N       +N   S     +T  +L  G  +P C+Y+   
Sbjct: 66  DLNTFLHEPFSSVAITCQTPNIACKNSCKNCHQSHGPMSLTMGELTSGK-YPNCRYKEKH 124

Query: 123 GFRNVVVACENG---------LPVHLDQSI 143
                +VAC+           +PVHLD+ +
Sbjct: 125 LNTPYIVACDPPQQGDPGYPLVPVHLDKVV 154


>gi|67459908 ribonuclease, RNase A family, 12 (non-active) [Homo
           sapiens]
          Length = 147

 Score = 45.1 bits (105), Expect = 2e-05
 Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 11/98 (11%)

Query: 48  RYCESIMRRRGLTSP---CKDINTFIHGNKRSIKAICENKNGNPHRENLRI----SKSSF 100
           RYC  ++ +R +  P   CK  + FIH   R I  IC +      +    I    S++ F
Sbjct: 44  RYCNHMIIQRVIREPDHTCKKEHVFIHERPRKINGICISPKKVACQNLSAIFCFQSETKF 103

Query: 101 QVTTCKLHGGSPWPPCQYR--ATAGFRNVVVACENGLP 136
           ++T C+L  G+ +P C+Y    T GF  V+V C++  P
Sbjct: 104 KMTVCQLIEGTRYPACRYHYSPTEGF--VLVTCDDLRP 139


>gi|4506549 ribonuclease, RNase A family, 2 (liver,
           eosinophil-derived neurotoxin) [Homo sapiens]
          Length = 161

 Score = 40.0 bits (92), Expect = 7e-04
 Identities = 43/157 (27%), Positives = 64/157 (40%), Gaps = 26/157 (16%)

Query: 8   LLLVFVLGLGLTPPTLAQDNSRYTH---FLTQHYDAKPQGRDDRYCESIMRR-RGLTSPC 63
           + L+ +LGL     +L     ++T    F TQH +   Q      C + M+        C
Sbjct: 10  ICLLLLLGLLAVEGSLHVKPPQFTWAQWFETQHINMTSQ-----QCTNAMQVINNYQRRC 64

Query: 64  KDINTFIHGNKRSIKAICENKN----GNPHRENLRISKSSFQVTTCKLHGGSPW--PPCQ 117
           K+ NTF+     ++  +C N N     N  R+N   S S   +  C L   SP     C+
Sbjct: 65  KNQNTFLLTTFANVVNVCGNPNMTCPSNKTRKNCHHSGSQVPLIHCNLTTPSPQNISNCR 124

Query: 118 YRATAGFRNVVVACENG-----------LPVHLDQSI 143
           Y  T      +VAC+N            +PVHLD+ I
Sbjct: 125 YAQTPANMFYIVACDNRDQRRDPPQYPVVPVHLDRII 161


>gi|59276062 ribonuclease, RNase A family, 13 (non-active) [Homo
           sapiens]
          Length = 156

 Score = 40.0 bits (92), Expect = 7e-04
 Identities = 34/131 (25%), Positives = 54/131 (41%), Gaps = 6/131 (4%)

Query: 7   VLLLVFVLGLGLTPPTLAQDNSRYTHFLTQHYDAKPQGRDDR-YCE---SIMRRRGLTSP 62
           +L L  VLG  L      Q  SR  + L+  Y      +  R YC    S MR +   S 
Sbjct: 8   LLFLQLVLGPTLVMDIKMQIGSRNFYTLSIDYPRVNYPKGFRGYCNGLMSYMRGKMQNSD 67

Query: 63  CKDINTFIHGNKRSIKAICENKNG--NPHRENLRISKSSFQVTTCKLHGGSPWPPCQYRA 120
           C  I+  IH   ++I+  C+  +     + E   +++ S  +T C L    P   C Y +
Sbjct: 68  CPKIHYVIHAPWKAIQKFCKYSDSFCENYNEYCTLTQDSLPITVCSLSHQQPPTSCYYNS 127

Query: 121 TAGFRNVVVAC 131
           T   + + + C
Sbjct: 128 TLTNQKLYLLC 138


>gi|45243507 ribonuclease, RNase A family, 3 (eosinophil cationic
           protein) [Homo sapiens]
          Length = 160

 Score = 37.4 bits (85), Expect = 0.005
 Identities = 43/154 (27%), Positives = 62/154 (40%), Gaps = 22/154 (14%)

Query: 7   VLLLVFVLGLGLTPPTLAQDNSRYTHFLTQHYDAKPQGRDDRYCESIMRR-RGLTSPCKD 65
           +LLL+ ++G+  +        +R   F  QH    P       C   MR        CK+
Sbjct: 12  LLLLLGLMGVEGSLHARPPQFTRAQWFAIQHISLNPPR-----CTIAMRAINNYRWRCKN 66

Query: 66  INTFIHGNKRSIKAICENKNGN-PHRENLR-ISKSSFQVTT--CKL--HGGSPWPPCQYR 119
            NTF+     ++  +C N++   PH   L    +S F+V    C L   G      C Y 
Sbjct: 67  QNTFLRTTFANVVNVCGNQSIRCPHNRTLNNCHRSRFRVPLLHCDLINPGAQNISNCTYA 126

Query: 120 ATAGFRNVVVACENG----------LPVHLDQSI 143
              G R  VVAC+N           +PVHLD +I
Sbjct: 127 DRPGRRFYVVACDNRDPRDSPRYPVVPVHLDTTI 160


>gi|61175227 ribonuclease, RNase A family, 10 (non-active) [Homo
           sapiens]
          Length = 216

 Score = 34.3 bits (77), Expect = 0.038
 Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 15/97 (15%)

Query: 47  DRYCESIM--RRRGLTSPCKDINTFIHGNKRSIKAI-------CENKNGNPHRENLRISK 97
           DR C  +M  + +  +  C     FIH +  ++KA+       CE K G  H+     S 
Sbjct: 116 DRECNDMMAHKMKEPSQSCIAQYAFIHEDLNTVKAVCNSPVIACELKGGKCHK-----SS 170

Query: 98  SSFQVTTCKL-HGGSPWPPCQYRATAGFRNVVVACEN 133
             F +T C+L       P C Y  +   +++++ C +
Sbjct: 171 RPFDLTLCELSQPDQVTPNCNYLTSVIKKHIIITCND 207


>gi|167857788 MHC class I polypeptide-related sequence B [Homo
           sapiens]
          Length = 383

 Score = 29.3 bits (64), Expect = 1.2
 Identities = 30/134 (22%), Positives = 53/134 (39%), Gaps = 34/134 (25%)

Query: 3   MGLGVLLLVFVLGLGLTPP--------------TLAQDNSRYTHFLTQ-HYDAKPQGRDD 47
           MGLG +LL   +     PP               L+QD S  + FL + H D +P  R D
Sbjct: 1   MGLGRVLLFLAVAFPFAPPAAAAEPHSLRYNLMVLSQDGSVQSGFLAEGHLDGQPFLRYD 60

Query: 48  R----------YCESIMRRRGLTSPCKDINTFIHGNKRSIKAICENKNGNPHRENLRISK 97
           R          + E+++  +   +  +D+       +R++  I + K G    + +R+  
Sbjct: 61  RQKRRAKPQGQWAENVLGAKTWDTETEDLTENGQDLRRTLTHIKDQKGGLHSLQEIRV-- 118

Query: 98  SSFQVTTCKLHGGS 111
                  C++H  S
Sbjct: 119 -------CEIHEDS 125


>gi|46249414 latent transforming growth factor beta binding protein 1
            isoform LTBP-1L [Homo sapiens]
          Length = 1722

 Score = 28.9 bits (63), Expect = 1.6
 Identities = 27/120 (22%), Positives = 43/120 (35%), Gaps = 8/120 (6%)

Query: 26   DNSRYTHFLTQHYDAKPQGRDDRYCESIMRRRGLTSPCKDINTFIHGNKRSIKAICENKN 85
            D  ++ H          +G     C+   R  GL   C+DIN  +       +  C N  
Sbjct: 1123 DECQHRHLCAHGQCRNTEGSFQCVCDQGYRASGLGDHCEDINECLEDKSVCQRGDCINTA 1182

Query: 86   GN-----PHRENLRISKSSFQVTTCKLHGGSPWPPCQYRATAGFRNVVVACENGLPVHLD 140
            G+     P    L  +K+   +  C+ H G   P  +   T G  + V  C+ G  +  D
Sbjct: 1183 GSYDCTCPDGFQLDDNKTCQDINECE-HPGLCGPQGECLNTEGSFHCV--CQQGFSISAD 1239


>gi|46249412 latent transforming growth factor beta binding protein
           1 isoform LTBP-1S [Homo sapiens]
          Length = 1396

 Score = 28.9 bits (63), Expect = 1.6
 Identities = 27/120 (22%), Positives = 43/120 (35%), Gaps = 8/120 (6%)

Query: 26  DNSRYTHFLTQHYDAKPQGRDDRYCESIMRRRGLTSPCKDINTFIHGNKRSIKAICENKN 85
           D  ++ H          +G     C+   R  GL   C+DIN  +       +  C N  
Sbjct: 797 DECQHRHLCAHGQCRNTEGSFQCVCDQGYRASGLGDHCEDINECLEDKSVCQRGDCINTA 856

Query: 86  GN-----PHRENLRISKSSFQVTTCKLHGGSPWPPCQYRATAGFRNVVVACENGLPVHLD 140
           G+     P    L  +K+   +  C+ H G   P  +   T G  + V  C+ G  +  D
Sbjct: 857 GSYDCTCPDGFQLDDNKTCQDINECE-HPGLCGPQGECLNTEGSFHCV--CQQGFSISAD 913


>gi|110611170 ADAM metallopeptidase with thrombospondin type 1
           motif, 17 preproprotein [Homo sapiens]
          Length = 1095

 Score = 27.7 bits (60), Expect = 3.6
 Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 6/42 (14%)

Query: 96  SKSSFQVTTCKLHG------GSPWPPCQYRATAGFRNVVVAC 131
           S+   QV  C LH         PW PC      GF++  V C
Sbjct: 847 SRPEPQVRRCNLHPCQSRWVAGPWSPCSATCEKGFQHREVTC 888


>gi|27886568 interferon induced with helicase C domain 1 [Homo
           sapiens]
          Length = 1025

 Score = 27.3 bits (59), Expect = 4.7
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 10/65 (15%)

Query: 39  DAKPQGRDDRYCESIMRRRGLTSPCK------DINTFIHGNKRSIKAICENKNGNPHREN 92
           D   +G DD YC+       L  P K       + T    N + +K + E    NP  EN
Sbjct: 643 DDSDEGGDDEYCDGDEDEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAE----NPEYEN 698

Query: 93  LRISK 97
            +++K
Sbjct: 699 EKLTK 703


>gi|46409306 family with sequence similarity 43, member B [Homo
           sapiens]
          Length = 329

 Score = 27.3 bits (59), Expect = 4.7
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 82  ENKNGNPHRENLRISKSSFQVTTCKLHGG-SPWPPCQYR 119
           E + G P RE   +   + ++ TC L G  +P PP Q R
Sbjct: 277 EQEGGVPQRERPEVLSLARELRTCSLRGAPAPPPPAQPR 315


>gi|147904700 semaphorin 5A [Homo sapiens]
          Length = 1074

 Score = 26.6 bits (57), Expect = 8.0
 Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 4/42 (9%)

Query: 101 QVTTCKLHGG----SPWPPCQYRATAGFRNVVVACENGLPVH 138
           ++  C  +GG    + W PC      GF+    +C N  P H
Sbjct: 588 EIANCSRNGGWTPWTSWSPCSTTCGIGFQVRQRSCSNPTPRH 629


>gi|9966847 hypothetical protein LOC57102 [Homo sapiens]
          Length = 552

 Score = 26.6 bits (57), Expect = 8.0
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 51  ESIMRRRGLTSPCKDINTFIHGNKRSIKAICENKNGNPHRENLRISKSSFQVTTCKLH 108
           E +M+  G +   +D+N+    +  S + + ENK  N  +++  I K  +Q    KLH
Sbjct: 175 EKVMQELGKSLTDQDVNSLAAQHFESQQDL-ENKWSNELKQSTAIQKQEYQEWVIKLH 231


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.139    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,371,761
Number of Sequences: 37866
Number of extensions: 281481
Number of successful extensions: 597
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 562
Number of HSP's gapped (non-prelim): 29
length of query: 147
length of database: 18,247,518
effective HSP length: 93
effective length of query: 54
effective length of database: 14,725,980
effective search space: 795202920
effective search space used: 795202920
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.6 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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