Search of human proteins with 147900821

Search of human proteins with 147900821

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|147900821 stromal cell derived factor receptor 2 homolog
[Homo sapiens]
         (626 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|147900821 stromal cell derived factor receptor 2 homolog [Hom...  1300   0.0  
gi|115648140 hypothetical protein LOC23732 [Homo sapiens]              72   1e-12
gi|110347423 spondin 1, extracellular matrix protein [Homo sapiens]    46   9e-05
gi|45446740 ATP-binding cassette, sub-family A, member 2 isoform...    33   1.0  
gi|47078218 ATP-binding cassette, sub-family A, member 2 isoform...    33   1.0  
gi|50345881 cytoplasmic polyadenylation element binding protein ...    30   5.1  
gi|157817073 Cdc2-related kinase, arginine/serine-rich isoform 2...    30   6.7  
gi|157817023 Cdc2-related kinase, arginine/serine-rich isoform 1...    30   6.7  
gi|55743106 alpha 3 type VI collagen isoform 5 precursor [Homo s...    30   8.7  
gi|55743098 alpha 3 type VI collagen isoform 1 precursor [Homo s...    30   8.7  
gi|240255535 alpha 3 type VI collagen isoform 4 precursor [Homo ...    30   8.7  
gi|189491766 nuclear receptor subfamily 2, group C, member 1 iso...    30   8.7  
gi|160948610 E3 ubiquitin-protein ligase UBR3 [Homo sapiens]           30   8.7  

>gi|147900821 stromal cell derived factor receptor 2 homolog [Homo
           sapiens]
          Length = 626

 Score = 1300 bits (3365), Expect = 0.0
 Identities = 626/626 (100%), Positives = 626/626 (100%)

Query: 1   MAVSGFTLGTCILLLHISYVANYPNGKVTQSCHGMIPEHGHSPQSVPVHDIYVSQMTFRP 60
           MAVSGFTLGTCILLLHISYVANYPNGKVTQSCHGMIPEHGHSPQSVPVHDIYVSQMTFRP
Sbjct: 1   MAVSGFTLGTCILLLHISYVANYPNGKVTQSCHGMIPEHGHSPQSVPVHDIYVSQMTFRP 60

Query: 61  GDQIEVTLSGHPFKGFLLEARNAEDLNGPPIGSFTLIDSEVSQLLTCEDIQGSAVSHRSA 120
           GDQIEVTLSGHPFKGFLLEARNAEDLNGPPIGSFTLIDSEVSQLLTCEDIQGSAVSHRSA
Sbjct: 61  GDQIEVTLSGHPFKGFLLEARNAEDLNGPPIGSFTLIDSEVSQLLTCEDIQGSAVSHRSA 120

Query: 121 SKKTEIKVYWNAPSSAPNHTQFLVTVVEKYKIYWVKIPGPIISQPNAFPFTTPKATVVPL 180
           SKKTEIKVYWNAPSSAPNHTQFLVTVVEKYKIYWVKIPGPIISQPNAFPFTTPKATVVPL
Sbjct: 121 SKKTEIKVYWNAPSSAPNHTQFLVTVVEKYKIYWVKIPGPIISQPNAFPFTTPKATVVPL 180

Query: 181 PTLPPVSHLTKPFSASDCGNKKFCIRSPLNCDPEKEASCVFLSFTRDDQSVMVEMSGPSK 240
           PTLPPVSHLTKPFSASDCGNKKFCIRSPLNCDPEKEASCVFLSFTRDDQSVMVEMSGPSK
Sbjct: 181 PTLPPVSHLTKPFSASDCGNKKFCIRSPLNCDPEKEASCVFLSFTRDDQSVMVEMSGPSK 240

Query: 241 GYLSFALSHDQWMGDDDAYLCIHEDQTVYIQPSHLTGRSHPVMDSRDTLEDMAWRLADGV 300
           GYLSFALSHDQWMGDDDAYLCIHEDQTVYIQPSHLTGRSHPVMDSRDTLEDMAWRLADGV
Sbjct: 241 GYLSFALSHDQWMGDDDAYLCIHEDQTVYIQPSHLTGRSHPVMDSRDTLEDMAWRLADGV 300

Query: 301 MQCSFRRNITLPGVKNRFDLNTSYYIFLADGAANDGRIYKHSQQPLITYEKYDVTDSPKN 360
           MQCSFRRNITLPGVKNRFDLNTSYYIFLADGAANDGRIYKHSQQPLITYEKYDVTDSPKN
Sbjct: 301 MQCSFRRNITLPGVKNRFDLNTSYYIFLADGAANDGRIYKHSQQPLITYEKYDVTDSPKN 360

Query: 361 IGGSHSVLLLKVHGALMFVAWMTTVSIGVLVARFFKPVWSKAFLLGEAAWFQVHRMLMFT 420
           IGGSHSVLLLKVHGALMFVAWMTTVSIGVLVARFFKPVWSKAFLLGEAAWFQVHRMLMFT
Sbjct: 361 IGGSHSVLLLKVHGALMFVAWMTTVSIGVLVARFFKPVWSKAFLLGEAAWFQVHRMLMFT 420

Query: 421 TTVLTCIAFVMPFIYRGGWSRHAGYHPYLGCIVMTLAVLQPLLAVFRPPLHDPRRQMFNW 480
           TTVLTCIAFVMPFIYRGGWSRHAGYHPYLGCIVMTLAVLQPLLAVFRPPLHDPRRQMFNW
Sbjct: 421 TTVLTCIAFVMPFIYRGGWSRHAGYHPYLGCIVMTLAVLQPLLAVFRPPLHDPRRQMFNW 480

Query: 481 THWSMGTAARIIAVAAMFLGMDLPGLNLPDSWKTYAMTGFVAWHVGTEVVLELKYWMMTE 540
           THWSMGTAARIIAVAAMFLGMDLPGLNLPDSWKTYAMTGFVAWHVGTEVVLELKYWMMTE
Sbjct: 481 THWSMGTAARIIAVAAMFLGMDLPGLNLPDSWKTYAMTGFVAWHVGTEVVLELKYWMMTE 540

Query: 541 FRSFSHLLQWKQRVMLLKRQCWQFMSVGMLLFSSYFYLQSTIYEQAKTLAFAGQVIIIIK 600
           FRSFSHLLQWKQRVMLLKRQCWQFMSVGMLLFSSYFYLQSTIYEQAKTLAFAGQVIIIIK
Sbjct: 541 FRSFSHLLQWKQRVMLLKRQCWQFMSVGMLLFSSYFYLQSTIYEQAKTLAFAGQVIIIIK 600

Query: 601 PKKLEACPDCLEHICEFSLGRLGSCL 626
           PKKLEACPDCLEHICEFSLGRLGSCL
Sbjct: 601 PKKLEACPDCLEHICEFSLGRLGSCL 626


>gi|115648140 hypothetical protein LOC23732 [Homo sapiens]
          Length = 344

 Score = 72.4 bits (176), Expect = 1e-12
 Identities = 52/166 (31%), Positives = 76/166 (45%), Gaps = 8/166 (4%)

Query: 179 PLPTLPPVSHLTKPFSASDCGNKKFCIR-SPLNCDPEKEASC-VFLSFTRDDQSVMVEMS 236
           P PT PPV    K     DCG  K C R     C+ E   +C  FLS+      V  E+S
Sbjct: 133 PFPTAPPVDPFAK-IKVDDCGKTKGCFRYGKPGCNAE---TCDYFLSYRMIGADVEFELS 188

Query: 237 GPSKGYLSFALSHDQWMGDDDAYLCIHEDQ-TVYIQPSHLTGRSHPVMDSRDTLEDMAWR 295
             + G+++   S D+ MG DD   C+H+D   V IQ  +  G+    +  R+   D    
Sbjct: 189 ADTDGWVAVGFSSDKKMGGDDVMACVHDDNGRVRIQHFYNVGQWAKEI-QRNPARDEEGV 247

Query: 296 LADGVMQCSFRRNITLPGVKNRFDLNTSYYIFLADGAANDGRIYKH 341
             +  + C F+R + +P  +   DL+ S+Y   A G A  G I +H
Sbjct: 248 FENNRVTCRFKRPVNVPRDETIVDLHLSWYYLFAWGPAIQGSITRH 293


>gi|110347423 spondin 1, extracellular matrix protein [Homo sapiens]
          Length = 807

 Score = 46.2 bits (108), Expect = 9e-05
 Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 9/103 (8%)

Query: 58  FRPGDQIEVTLSGHP---FKGFLLEA--RNAE-DLNGPPIGSFTLIDSEVSQLLTCEDIQ 111
           ++PG    VTLS  P   F+GF L A   N E D      G+F +ID E +Q ++   + 
Sbjct: 72  YKPGTSYRVTLSAAPPSYFRGFTLIALRENREGDKEEDHAGTFQIIDEEETQFMSNCPV- 130

Query: 112 GSAVSHRSASKKTEIKVYWNAPSSAPNHTQFLVTVVEKYKIYW 154
             AV+  +  ++T I+V+W AP +         ++V+K  IY+
Sbjct: 131 --AVTESTPRRRTRIQVFWIAPPAGTGCVILKASIVQKRIIYF 171


>gi|45446740 ATP-binding cassette, sub-family A, member 2 isoform a
           [Homo sapiens]
          Length = 2436

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 29/129 (22%), Positives = 51/129 (39%), Gaps = 15/129 (11%)

Query: 473 PRRQMFNWTHWSMGTAARIIAVAAMFLG--MDLPGLNLPDSWKTYAMTGFVAWHVGTEVV 530
           P   + +W +    T   I+A     L   M   GLN    W  + +TGFV         
Sbjct: 709 PLCMVISWVYSVAMTIQHIVAEKEHRLKEVMKTMGLNNAVHWVAWFITGFVQ-------- 760

Query: 531 LELKYWMMTEFRSFSHLLQWKQRVMLLKRQCWQFMSVGMLLFSSYFYLQSTIYEQAKTLA 590
           L +    +T    +  +L     V++     W F++V  +    + +L S +Y +AK  +
Sbjct: 761 LSISVTALTAILKYGQVLMHSHVVII-----WLFLAVYAVATIMFCFLVSVLYSKAKLAS 815

Query: 591 FAGQVIIII 599
             G +I  +
Sbjct: 816 ACGGIIYFL 824


>gi|47078218 ATP-binding cassette, sub-family A, member 2 isoform b
           [Homo sapiens]
          Length = 2466

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 29/129 (22%), Positives = 51/129 (39%), Gaps = 15/129 (11%)

Query: 473 PRRQMFNWTHWSMGTAARIIAVAAMFLG--MDLPGLNLPDSWKTYAMTGFVAWHVGTEVV 530
           P   + +W +    T   I+A     L   M   GLN    W  + +TGFV         
Sbjct: 739 PLCMVISWVYSVAMTIQHIVAEKEHRLKEVMKTMGLNNAVHWVAWFITGFVQ-------- 790

Query: 531 LELKYWMMTEFRSFSHLLQWKQRVMLLKRQCWQFMSVGMLLFSSYFYLQSTIYEQAKTLA 590
           L +    +T    +  +L     V++     W F++V  +    + +L S +Y +AK  +
Sbjct: 791 LSISVTALTAILKYGQVLMHSHVVII-----WLFLAVYAVATIMFCFLVSVLYSKAKLAS 845

Query: 591 FAGQVIIII 599
             G +I  +
Sbjct: 846 ACGGIIYFL 854


>gi|50345881 cytoplasmic polyadenylation element binding protein 3
           [Homo sapiens]
          Length = 698

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 40/148 (27%), Positives = 59/148 (39%), Gaps = 20/148 (13%)

Query: 178 VPLPTLPPVSHLTKPFSASDCGNKKFCIRSPLNCDPEKEASCVFLSFTRDDQSVMVEMSG 237
           VP P L P+S L KPFS++     KF   +PL      E +    +F  D+ + ++    
Sbjct: 282 VPSP-LNPISPLKKPFSSNVIAPPKFPRAAPLTSKSWMEDN----AFRTDNGNNLLPFQD 336

Query: 238 PSKGYLSFALSHDQWMGDDDAYLCIHEDQTVYIQPSHLTGRSHPVMDSRDTLEDMAWR-L 296
            S+ Y +F L H       D     HE          L G+ +P      +  D+ WR  
Sbjct: 337 RSRPYDTFNL-HSLENSLMDMIRTDHEP---------LKGKHYPPSGPPMSFADIMWRNH 386

Query: 297 ADGVMQCSFRRNITLPGVKNRFDLNTSY 324
             G M  +F      PG  N   LN ++
Sbjct: 387 FAGRMGINFHH----PGTDNIMALNNAF 410


>gi|157817073 Cdc2-related kinase, arginine/serine-rich isoform 2
           [Homo sapiens]
          Length = 1481

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 14/29 (48%), Positives = 15/29 (51%)

Query: 161 IISQPNAFPFTTPKATVVPLPTLPPVSHL 189
           I S P   P TTP     PLP LPP+  L
Sbjct: 532 IASPPPPLPTTTPPPQTPPLPPLPPIPAL 560


>gi|157817023 Cdc2-related kinase, arginine/serine-rich isoform 1
           [Homo sapiens]
          Length = 1490

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 14/29 (48%), Positives = 15/29 (51%)

Query: 161 IISQPNAFPFTTPKATVVPLPTLPPVSHL 189
           I S P   P TTP     PLP LPP+  L
Sbjct: 532 IASPPPPLPTTTPPPQTPPLPPLPPIPAL 560


>gi|55743106 alpha 3 type VI collagen isoform 5 precursor [Homo
            sapiens]
          Length = 2971

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 4/42 (9%)

Query: 155  VKIPGPIISQPNAFPFTTPKATVVPLPTLPPVSHLTKPFSAS 196
            V +P  + S P + P TT K    P+ T  PV+  TKP + +
Sbjct: 2650 VNVPNNVTSSPTSNPVTTTK----PVTTTKPVTTTTKPVTTT 2687


>gi|55743098 alpha 3 type VI collagen isoform 1 precursor [Homo
            sapiens]
          Length = 3177

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 4/42 (9%)

Query: 155  VKIPGPIISQPNAFPFTTPKATVVPLPTLPPVSHLTKPFSAS 196
            V +P  + S P + P TT K    P+ T  PV+  TKP + +
Sbjct: 2856 VNVPNNVTSSPTSNPVTTTK----PVTTTKPVTTTTKPVTTT 2893


>gi|240255535 alpha 3 type VI collagen isoform 4 precursor [Homo
            sapiens]
          Length = 2570

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 4/42 (9%)

Query: 155  VKIPGPIISQPNAFPFTTPKATVVPLPTLPPVSHLTKPFSAS 196
            V +P  + S P + P TT K    P+ T  PV+  TKP + +
Sbjct: 2249 VNVPNNVTSSPTSNPVTTTK----PVTTTKPVTTTTKPVTTT 2286


>gi|189491766 nuclear receptor subfamily 2, group C, member 1
           isoform c [Homo sapiens]
          Length = 483

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 13/41 (31%), Positives = 22/41 (53%)

Query: 550 WKQRVMLLKRQCWQFMSVGMLLFSSYFYLQSTIYEQAKTLA 590
           W +   L   QCWQ M+V  +L +    L +++ + AK +A
Sbjct: 430 WNELFTLGLAQCWQVMNVATILATFVNCLHNSLQQDAKVIA 470


>gi|160948610 E3 ubiquitin-protein ligase UBR3 [Homo sapiens]
          Length = 1888

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 39/202 (19%), Positives = 78/202 (38%), Gaps = 26/202 (12%)

Query: 111  QGSAVSHRSASKKTEIKVYWNAPSSAPNHTQFLVTVVEKYKIYWVKIPGPIISQPNA-FP 169
            + S+ +++    KT  K  W+AP SAP  T  ++ + E      +K+   +  + N+ +P
Sbjct: 1052 RSSSEANQVVRPKTSSK--WSAPGSAPQLTTAILEIKESILSLLIKLHHKLSGKQNSYYP 1109

Query: 170  FTTPKATVVPLPTLPPVSH----------LTKPFSASDCGNK---KFCIRSPLNCDPEKE 216
                   ++  P +P  SH          L K  S S    +   + C +      P+K 
Sbjct: 1110 PWLDDIEILIQPEIPKYSHGDGITAVERILLKAASQSRMNKRIIEEICRKVTPPVPPKKV 1169

Query: 217  ASCVFLSFTRDD---------QSVMVEMSGPSKGYLSFALSHDQWMGDDDAYLCIHEDQ- 266
             +    +  +++         Q ++ E +   K ++  A+  D    D    +   E Q 
Sbjct: 1170 TAAEKKTLDKEERRQKARERQQKLLAEFASRQKSFMETAMDVDSPENDIPMEITTAEPQV 1229

Query: 267  TVYIQPSHLTGRSHPVMDSRDT 288
            +  +    + G+S P  + R T
Sbjct: 1230 SEAVYDCVICGQSGPSSEDRPT 1251


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.324    0.137    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,619,299
Number of Sequences: 37866
Number of extensions: 1192660
Number of successful extensions: 3606
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 3592
Number of HSP's gapped (non-prelim): 18
length of query: 626
length of database: 18,247,518
effective HSP length: 108
effective length of query: 518
effective length of database: 14,157,990
effective search space: 7333838820
effective search space used: 7333838820
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.