Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: C9orf68 Sequence: fasta or formatted (392aa) NCBI GI: 145701007
Description:

hypothetical protein LOC55064

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8         19           2
 C cysteine            1.3          5           1
 D aspartate           4.1         16           1
 E glutamate           7.4         29           2
 F phenylalanine       6.4         25           2
 G glycine             4.1         16           2
 H histidine           3.8         15           2
 I isoleucine          4.1         16           2
 K lysine              5.9         23           2
 L leucine             8.9         35           2
 M methionine          2.0          8           1
 N asparagine          4.1         16           2
 P proline             7.7         30           2
 Q glutamine           4.3         17           1
 R arginine            7.9         31           2
 S serine             11.0         43           4
 T threonine           3.8         15           1
 V valine              5.1         20           3
 W tryptophan          0.5          2           1
 Y tyrosine            2.8         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC55064 
SPATA6                0.158   spermatogenesis associated 6 
NRAP                  0.013   nebulin-related anchoring protein isoform C 
NRAP                  0.013   nebulin-related anchoring protein isoform S 
RBBP6                 0.012   retinoblastoma-binding protein 6 isoform 2 
RBBP6                 0.012   retinoblastoma-binding protein 6 isoform 1 
NGEF                  0.010   neuronal guanine nucleotide exchange factor isoform...
MGA                   0.010   MAX gene associated 
CHD9                  0.009   chromodomain helicase DNA binding protein 9 
PPIG                  0.006   peptidylprolyl isomerase G 
ANKRD12               0.006   ankyrin repeat domain 12 isoform 2 
ANKRD12               0.006   ankyrin repeat domain 12 isoform 1 
BRD2                  0.005   bromodomain containing 2 
BRD2                  0.005   bromodomain containing 2 
GLI2                  0.005   GLI-Kruppel family member GLI2 
LOC728475             0.005   PREDICTED: hypothetical protein 
LOC100130911          0.005   PREDICTED: hypothetical protein 
LOC728475             0.005   PREDICTED: hypothetical protein 
LOC100130911          0.005   PREDICTED: hypothetical protein 
LOC728475             0.005   PREDICTED: hypothetical protein 
LOC100130911          0.005   PREDICTED: hypothetical protein 
GPR98                 0.005   G protein-coupled receptor 98 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press