Search of human proteins with 14249348

Search of human proteins with 14249348

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|14249348 thioredoxin-like 5 [Homo sapiens]
         (123 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|14249348 thioredoxin-like 5 [Homo sapiens]                         261   9e-71
gi|74027270 beta-carotene 15,15'-monooxygenase [Homo sapiens]          32   0.093
gi|10947139 arginase 1 [Homo sapiens]                                  28   2.3  
gi|110349719 titin isoform N2-A [Homo sapiens]                         26   6.7  
gi|110349717 titin isoform novex-2 [Homo sapiens]                      26   6.7  
gi|110349713 titin isoform novex-1 [Homo sapiens]                      26   6.7  
gi|110349715 titin isoform N2-B [Homo sapiens]                         26   6.7  
gi|109637784 GLIS family zinc finger 3 isoform a [Homo sapiens]        26   6.7  
gi|109637782 GLIS family zinc finger 3 isoform b [Homo sapiens]        26   6.7  
gi|48717495 chondroitin polymerizing factor 2 [Homo sapiens]           26   8.7  
gi|30410043 late cornified envelope 2D [Homo sapiens]                  26   8.7  

>gi|14249348 thioredoxin-like 5 [Homo sapiens]
          Length = 123

 Score =  261 bits (667), Expect = 9e-71
 Identities = 123/123 (100%), Positives = 123/123 (100%)

Query: 1   MARYEEVSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHI 60
           MARYEEVSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHI
Sbjct: 1   MARYEEVSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHI 60

Query: 61  SEGCVFIYCQVGEKPYWKDPNNDFRKNLKVTAVPTLLKYGTPQKLVESECLQANLVEMLF 120
           SEGCVFIYCQVGEKPYWKDPNNDFRKNLKVTAVPTLLKYGTPQKLVESECLQANLVEMLF
Sbjct: 61  SEGCVFIYCQVGEKPYWKDPNNDFRKNLKVTAVPTLLKYGTPQKLVESECLQANLVEMLF 120

Query: 121 SED 123
           SED
Sbjct: 121 SED 123


>gi|74027270 beta-carotene 15,15'-monooxygenase [Homo sapiens]
          Length = 547

 Score = 32.3 bits (72), Expect = 0.093
 Identities = 13/43 (30%), Positives = 28/43 (65%)

Query: 76  YWKDPNNDFRKNLKVTAVPTLLKYGTPQKLVESECLQANLVEM 118
           Y  + N DF++N ++T+VPTL ++  P  + ++  +  NL+++
Sbjct: 336 YLANLNQDFKENSRLTSVPTLRRFAVPLHVDKNAEVGTNLIKV 378


>gi|10947139 arginase 1 [Homo sapiens]
          Length = 322

 Score = 27.7 bits (60), Expect = 2.3
 Identities = 13/39 (33%), Positives = 20/39 (51%)

Query: 36  DAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEK 74
           D  G SW   C+ A+ +V  GL+ +  G  +I   +G K
Sbjct: 158 DVPGFSWVTPCISAKDIVYIGLRDVDPGEHYILKTLGIK 196


>gi|110349719 titin isoform N2-A [Homo sapiens]
          Length = 33423

 Score = 26.2 bits (56), Expect = 6.7
 Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 3/82 (3%)

Query: 24    GKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNND 83
             G  I  Y    +D     W P    ++       KH++EG  +++    E  Y + P  +
Sbjct: 17338 GSVITNYVVERRDVASAQWSPLSATSKKKSHFA-KHLNEGNQYLFRVAAENQYGRGPFVE 17396

Query: 84    FRKNLKVTAVPTLLKYGTPQKL 105
               K +K  A+  L   G P+ L
Sbjct: 17397 TPKPIK--ALDPLHPPGPPKDL 17416


>gi|110349717 titin isoform novex-2 [Homo sapiens]
          Length = 27118

 Score = 26.2 bits (56), Expect = 6.7
 Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 3/82 (3%)

Query: 24    GKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNND 83
             G  I  Y    +D     W P    ++       KH++EG  +++    E  Y + P  +
Sbjct: 11033 GSVITNYVVERRDVASAQWSPLSATSKKKSHFA-KHLNEGNQYLFRVAAENQYGRGPFVE 11091

Query: 84    FRKNLKVTAVPTLLKYGTPQKL 105
               K +K  A+  L   G P+ L
Sbjct: 11092 TPKPIK--ALDPLHPPGPPKDL 11111


>gi|110349713 titin isoform novex-1 [Homo sapiens]
          Length = 27051

 Score = 26.2 bits (56), Expect = 6.7
 Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 3/82 (3%)

Query: 24    GKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNND 83
             G  I  Y    +D     W P    ++       KH++EG  +++    E  Y + P  +
Sbjct: 10966 GSVITNYVVERRDVASAQWSPLSATSKKKSHFA-KHLNEGNQYLFRVAAENQYGRGPFVE 11024

Query: 84    FRKNLKVTAVPTLLKYGTPQKL 105
               K +K  A+  L   G P+ L
Sbjct: 11025 TPKPIK--ALDPLHPPGPPKDL 11044


>gi|110349715 titin isoform N2-B [Homo sapiens]
          Length = 26926

 Score = 26.2 bits (56), Expect = 6.7
 Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 3/82 (3%)

Query: 24    GKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNND 83
             G  I  Y    +D     W P    ++       KH++EG  +++    E  Y + P  +
Sbjct: 10841 GSVITNYVVERRDVASAQWSPLSATSKKKSHFA-KHLNEGNQYLFRVAAENQYGRGPFVE 10899

Query: 84    FRKNLKVTAVPTLLKYGTPQKL 105
               K +K  A+  L   G P+ L
Sbjct: 10900 TPKPIK--ALDPLHPPGPPKDL 10919


>gi|109637784 GLIS family zinc finger 3 isoform a [Homo sapiens]
          Length = 930

 Score = 26.2 bits (56), Expect = 6.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 10  SGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKS 41
           + F+ FHRA   H+G T++   + S    G+S
Sbjct: 869 ASFDVFHRAFSTHSGITVYDLPSSSSSLFGES 900


>gi|109637782 GLIS family zinc finger 3 isoform b [Homo sapiens]
          Length = 775

 Score = 26.2 bits (56), Expect = 6.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 10  SGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKS 41
           + F+ FHRA   H+G T++   + S    G+S
Sbjct: 714 ASFDVFHRAFSTHSGITVYDLPSSSSSLFGES 745


>gi|48717495 chondroitin polymerizing factor 2 [Homo sapiens]
          Length = 772

 Score = 25.8 bits (55), Expect = 8.7
 Identities = 11/32 (34%), Positives = 21/32 (65%), Gaps = 2/32 (6%)

Query: 75  PYWKDPNNDFRKNLKVTAVPTLLKYGTPQKLV 106
           PY++DPN  ++K L+   + T L  G+ ++L+
Sbjct: 74  PYYRDPNKPYKKVLRTRYIQTEL--GSRERLL 103


>gi|30410043 late cornified envelope 2D [Homo sapiens]
          Length = 110

 Score = 25.8 bits (55), Expect = 8.7
 Identities = 10/21 (47%), Positives = 12/21 (57%)

Query: 44  PDCVQAEPVVREGLKHISEGC 64
           PDC ++EP    G  H S GC
Sbjct: 89  PDCCESEPSGASGCCHSSGGC 109


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.135    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,030,542
Number of Sequences: 37866
Number of extensions: 216129
Number of successful extensions: 361
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 351
Number of HSP's gapped (non-prelim): 19
length of query: 123
length of database: 18,247,518
effective HSP length: 89
effective length of query: 34
effective length of database: 14,877,444
effective search space: 505833096
effective search space used: 505833096
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.