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Search of human proteins with 14196468
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|14196468 protocadherin gamma subfamily A, 4 isoform 2
precursor [Homo sapiens]
(820 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|14196468 protocadherin gamma subfamily A, 4 isoform 2 precurs... 1612 0.0
gi|11056026 protocadherin gamma subfamily A, 4 isoform 1 precurs... 1586 0.0
gi|14196465 protocadherin gamma subfamily A, 3 isoform 2 precurs... 1169 0.0
gi|14589880 protocadherin gamma subfamily A, 3 isoform 1 precurs... 1169 0.0
gi|14196474 protocadherin gamma subfamily A, 6 isoform 2 precurs... 1163 0.0
gi|11056065 protocadherin gamma subfamily A, 6 isoform 1 precurs... 1161 0.0
gi|14196471 protocadherin gamma subfamily A, 5 isoform 2 precurs... 1143 0.0
gi|11056024 protocadherin gamma subfamily A, 5 isoform 1 precurs... 1140 0.0
gi|14270484 protocadherin gamma subfamily A, 8 isoform 1 precurs... 1132 0.0
gi|7662056 protocadherin gamma subfamily A, 8 isoform 2 precurso... 1132 0.0
gi|14196477 protocadherin gamma subfamily A, 7 isoform 2 precurs... 1129 0.0
gi|11056063 protocadherin gamma subfamily A, 7 isoform 1 precurs... 1125 0.0
gi|11128041 protocadherin gamma subfamily A, 10 isoform 1 precur... 1121 0.0
gi|14196448 protocadherin gamma subfamily A, 10 isoform 2 precur... 1121 0.0
gi|11056030 protocadherin gamma subfamily A, 2 isoform 1 precurs... 1120 0.0
gi|14196462 protocadherin gamma subfamily A, 2 isoform 2 precurs... 1120 0.0
gi|8850232 protocadherin gamma subfamily A, 12 isoform 1 precurs... 1116 0.0
gi|14196457 protocadherin gamma subfamily A, 12 isoform 2 precur... 1116 0.0
gi|14196451 protocadherin gamma subfamily A, 11 isoform 2 precur... 1112 0.0
gi|11128039 protocadherin gamma subfamily A, 11 isoform 1 precur... 1112 0.0
gi|14196459 protocadherin gamma subfamily A, 1 isoform 2 precurs... 1104 0.0
gi|11056032 protocadherin gamma subfamily A, 1 isoform 1 precurs... 1102 0.0
gi|11128043 protocadherin gamma subfamily A, 9 isoform 1 precurs... 1100 0.0
gi|14270487 protocadherin gamma subfamily A, 9 isoform 2 precurs... 1100 0.0
gi|14196455 protocadherin gamma subfamily A, 11 isoform 3 precur... 849 0.0
gi|11128035 protocadherin gamma subfamily B, 2 isoform 1 precurs... 669 0.0
gi|14270493 protocadherin gamma subfamily B, 2 isoform 2 precurs... 669 0.0
gi|14270508 protocadherin gamma subfamily B, 7 isoform 2 precurs... 665 0.0
gi|11128027 protocadherin gamma subfamily B, 7 isoform 1 precurs... 665 0.0
gi|11128029 protocadherin gamma subfamily B, 6 isoform 1 precurs... 665 0.0
>gi|14196468 protocadherin gamma subfamily A, 4 isoform 2 precursor
[Homo sapiens]
Length = 820
Score = 1612 bits (4174), Expect = 0.0
Identities = 820/820 (100%), Positives = 820/820 (100%)
Query: 1 MAAPPARPDHTRLLQICLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELA 60
MAAPPARPDHTRLLQICLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELA
Sbjct: 1 MAAPPARPDHTRLLQICLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELA 60
Query: 61 ERGVRIVSRGRTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVE 120
ERGVRIVSRGRTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVE
Sbjct: 61 ERGVRIVSRGRTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVE 120
Query: 121 VEIIDVNDNPPSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSL 180
VEIIDVNDNPPSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSL
Sbjct: 121 VEIIDVNDNPPSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSL 180
Query: 181 DVQSGADGIKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAP 240
DVQSGADGIKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAP
Sbjct: 181 DVQSGADGIKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAP 240
Query: 241 VFTQPEYHVSVRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGD 300
VFTQPEYHVSVRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGD
Sbjct: 241 VFTQPEYHVSVRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGD 300
Query: 301 ITILGGLDYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESS 360
ITILGGLDYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESS
Sbjct: 301 ITILGGLDYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESS 360
Query: 361 SPGTVIALFNVHDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNI 420
SPGTVIALFNVHDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNI
Sbjct: 361 SPGTVIALFNVHDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNI 420
Query: 421 TVTATDQGTPPLSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPD 480
TVTATDQGTPPLSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPD
Sbjct: 421 TVTATDQGTPPLSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPD 480
Query: 481 SGDNARITYSLAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDP 540
SGDNARITYSLAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDP
Sbjct: 481 SGDNARITYSLAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDP 540
Query: 541 PLSSNVSLSLFVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQ 600
PLSSNVSLSLFVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQ
Sbjct: 541 PLSSNVSLSLFVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQ 600
Query: 601 NAWLSYSLLKSSEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTL 660
NAWLSYSLLKSSEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTL
Sbjct: 601 NAWLSYSLLKSSEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTL 660
Query: 661 TVAVADSIPDVLADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWH 720
TVAVADSIPDVLADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWH
Sbjct: 661 TVAVADSIPDVLADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWH 720
Query: 721 KSRLLHAEGSRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLI 780
KSRLLHAEGSRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLI
Sbjct: 721 KSRLLHAEGSRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLI 780
Query: 781 SRESCEKSEPLLITQDLLETKGDPNLQVSQSYNRSYHTEI 820
SRESCEKSEPLLITQDLLETKGDPNLQVSQSYNRSYHTEI
Sbjct: 781 SRESCEKSEPLLITQDLLETKGDPNLQVSQSYNRSYHTEI 820
>gi|11056026 protocadherin gamma subfamily A, 4 isoform 1 precursor
[Homo sapiens]
Length = 931
Score = 1586 bits (4106), Expect = 0.0
Identities = 807/807 (100%), Positives = 807/807 (100%)
Query: 1 MAAPPARPDHTRLLQICLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELA 60
MAAPPARPDHTRLLQICLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELA
Sbjct: 1 MAAPPARPDHTRLLQICLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELA 60
Query: 61 ERGVRIVSRGRTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVE 120
ERGVRIVSRGRTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVE
Sbjct: 61 ERGVRIVSRGRTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVE 120
Query: 121 VEIIDVNDNPPSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSL 180
VEIIDVNDNPPSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSL
Sbjct: 121 VEIIDVNDNPPSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSL 180
Query: 181 DVQSGADGIKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAP 240
DVQSGADGIKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAP
Sbjct: 181 DVQSGADGIKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAP 240
Query: 241 VFTQPEYHVSVRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGD 300
VFTQPEYHVSVRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGD
Sbjct: 241 VFTQPEYHVSVRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGD 300
Query: 301 ITILGGLDYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESS 360
ITILGGLDYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESS
Sbjct: 301 ITILGGLDYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESS 360
Query: 361 SPGTVIALFNVHDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNI 420
SPGTVIALFNVHDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNI
Sbjct: 361 SPGTVIALFNVHDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNI 420
Query: 421 TVTATDQGTPPLSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPD 480
TVTATDQGTPPLSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPD
Sbjct: 421 TVTATDQGTPPLSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPD 480
Query: 481 SGDNARITYSLAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDP 540
SGDNARITYSLAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDP
Sbjct: 481 SGDNARITYSLAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDP 540
Query: 541 PLSSNVSLSLFVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQ 600
PLSSNVSLSLFVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQ
Sbjct: 541 PLSSNVSLSLFVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQ 600
Query: 601 NAWLSYSLLKSSEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTL 660
NAWLSYSLLKSSEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTL
Sbjct: 601 NAWLSYSLLKSSEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTL 660
Query: 661 TVAVADSIPDVLADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWH 720
TVAVADSIPDVLADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWH
Sbjct: 661 TVAVADSIPDVLADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWH 720
Query: 721 KSRLLHAEGSRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLI 780
KSRLLHAEGSRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLI
Sbjct: 721 KSRLLHAEGSRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLI 780
Query: 781 SRESCEKSEPLLITQDLLETKGDPNLQ 807
SRESCEKSEPLLITQDLLETKGDPNLQ
Sbjct: 781 SRESCEKSEPLLITQDLLETKGDPNLQ 807
>gi|14196465 protocadherin gamma subfamily A, 3 isoform 2 precursor
[Homo sapiens]
Length = 829
Score = 1169 bits (3024), Expect = 0.0
Identities = 594/798 (74%), Positives = 673/798 (84%), Gaps = 1/798 (0%)
Query: 13 LLQICLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELAERGVRIVSRGRT 72
L +C LLG L E + QI YSV EE ++GS VGNIA DLGL PRELAERGVRIVSRGRT
Sbjct: 13 LALLCALLGTLCETGSGQIRYSVSEELDKGSFVGNIANDLGLEPRELAERGVRIVSRGRT 72
Query: 73 QLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVEVEIIDVNDNPPS 132
QLF+LNP+SG+LVTA RIDREELC + P C+ + IL+ED +KI VE+EI D+NDN P+
Sbjct: 73 QLFSLNPQSGSLVTAERIDREELCAQIPLCLVKINILVEDKLKIFEVEIEIKDINDNAPN 132
Query: 133 FGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSLDVQSGADGIKYP 192
F TE+ EIK+ E PG RFP+ AFDPDVG+NSLQ Y+L+ N YFSL V S ++G KYP
Sbjct: 133 FPTEELEIKIGELTVPGTRFPIKTAFDPDVGINSLQNYKLSPNDYFSLAVNSVSEGAKYP 192
Query: 193 ELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAPVFTQPEYHVSVR 252
ELVLERALDRE++ +H LVL A DGGDPV SG I +I++D NDN P+FTQPEY VSV
Sbjct: 193 ELVLERALDREKKEIHQLVLVASDGGDPVHSGNLHIQVIVLDANDNPPMFTQPEYRVSVW 252
Query: 253 ENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGDITILGGLDYEDS 312
ENVPVGTRLLTV ATDPDEG N V+Y K+ KI+++F LNS+SG+++IL LDYED+
Sbjct: 253 ENVPVGTRLLTVNATDPDEGFNAQVSYILDKMPGKIAEIFHLNSVSGEVSILKSLDYEDA 312
Query: 313 GFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESSSPGTVIALFNVH 372
FY+I +EA DGPGL +R+K+LVTVLD NDNAPE+T+TSLTSSV E + G IAL +VH
Sbjct: 313 MFYEIKIEAQDGPGLLSRAKILVTVLDVNDNAPEITITSLTSSVPEEGTVGREIALIDVH 372
Query: 373 DSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNITVTATDQGTPPL 432
D DSG NG V + NLPF LEK+ YYRL+T +LDRE++SEYNI++ A+D G+PPL
Sbjct: 373 DRDSGQNGQVEVFVLGNLPFKLEKSIDQYYRLVTATSLDREQISEYNISLRASDGGSPPL 432
Query: 433 STETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPDSGDNARITYSLA 492
STETHI+L V+DINDNPPTFPH SYSAYIPENNPRGASI S+TAQDPDS +NARITY+L
Sbjct: 433 STETHITLHVIDINDNPPTFPHLSYSAYIPENNPRGASIFSVTAQDPDSNNNARITYALT 492
Query: 493 EDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDPPLSSNVSLSLFV 552
EDT QGAPLSS+VSINSNTG+LYAL SFDYEQFRDL+LL+TASDSG+PPLSSNVSL+LFV
Sbjct: 493 EDTLQGAPLSSFVSINSNTGVLYALRSFDYEQFRDLKLLVTASDSGNPPLSSNVSLNLFV 552
Query: 553 LDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQNAWLSYSLLKSS 612
LDQNDN PEILYP PTDGSTGVELAPRSA+ GYLVTKVVAVDRDSGQNAWLSY LLK+S
Sbjct: 553 LDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKAS 612
Query: 613 EPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTLTVAVADSIPDVL 672
EPGLF+VGLHTGEVRTARALLDRDALKQ LVV VQDHGQPPLSATVTLTVAVAD IPD+L
Sbjct: 613 EPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRIPDIL 672
Query: 673 ADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWHKSRLLHAEGSRL 732
ADLGSL+PSA P+DS LTLYLVVAVAAVSCVFLAFV VLLAL+LRRWHKSRLL A G L
Sbjct: 673 ADLGSLEPSAKPNDSDLTLYLVVAVAAVSCVFLAFVIVLLALRLRRWHKSRLLQASGGGL 732
Query: 733 AGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLISRESCEKSEPLL 792
A P SHFVG DGVRAFLQTYSHEVSLTADSRKSHLIF QP+YADTLIS+ESCEKSEPLL
Sbjct: 733 ASTPGSHFVGADGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLISQESCEKSEPLL 792
Query: 793 ITQDLLETKGDPN-LQVS 809
ITQDLLE KGD N LQVS
Sbjct: 793 ITQDLLEMKGDSNLLQVS 810
>gi|14589880 protocadherin gamma subfamily A, 3 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 1169 bits (3023), Expect = 0.0
Identities = 591/794 (74%), Positives = 670/794 (84%)
Query: 13 LLQICLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELAERGVRIVSRGRT 72
L +C LLG L E + QI YSV EE ++GS VGNIA DLGL PRELAERGVRIVSRGRT
Sbjct: 13 LALLCALLGTLCETGSGQIRYSVSEELDKGSFVGNIANDLGLEPRELAERGVRIVSRGRT 72
Query: 73 QLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVEVEIIDVNDNPPS 132
QLF+LNP+SG+LVTA RIDREELC + P C+ + IL+ED +KI VE+EI D+NDN P+
Sbjct: 73 QLFSLNPQSGSLVTAERIDREELCAQIPLCLVKINILVEDKLKIFEVEIEIKDINDNAPN 132
Query: 133 FGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSLDVQSGADGIKYP 192
F TE+ EIK+ E PG RFP+ AFDPDVG+NSLQ Y+L+ N YFSL V S ++G KYP
Sbjct: 133 FPTEELEIKIGELTVPGTRFPIKTAFDPDVGINSLQNYKLSPNDYFSLAVNSVSEGAKYP 192
Query: 193 ELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAPVFTQPEYHVSVR 252
ELVLERALDRE++ +H LVL A DGGDPV SG I +I++D NDN P+FTQPEY VSV
Sbjct: 193 ELVLERALDREKKEIHQLVLVASDGGDPVHSGNLHIQVIVLDANDNPPMFTQPEYRVSVW 252
Query: 253 ENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGDITILGGLDYEDS 312
ENVPVGTRLLTV ATDPDEG N V+Y K+ KI+++F LNS+SG+++IL LDYED+
Sbjct: 253 ENVPVGTRLLTVNATDPDEGFNAQVSYILDKMPGKIAEIFHLNSVSGEVSILKSLDYEDA 312
Query: 313 GFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESSSPGTVIALFNVH 372
FY+I +EA DGPGL +R+K+LVTVLD NDNAPE+T+TSLTSSV E + G IAL +VH
Sbjct: 313 MFYEIKIEAQDGPGLLSRAKILVTVLDVNDNAPEITITSLTSSVPEEGTVGREIALIDVH 372
Query: 373 DSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNITVTATDQGTPPL 432
D DSG NG V + NLPF LEK+ YYRL+T +LDRE++SEYNI++ A+D G+PPL
Sbjct: 373 DRDSGQNGQVEVFVLGNLPFKLEKSIDQYYRLVTATSLDREQISEYNISLRASDGGSPPL 432
Query: 433 STETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPDSGDNARITYSLA 492
STETHI+L V+DINDNPPTFPH SYSAYIPENNPRGASI S+TAQDPDS +NARITY+L
Sbjct: 433 STETHITLHVIDINDNPPTFPHLSYSAYIPENNPRGASIFSVTAQDPDSNNNARITYALT 492
Query: 493 EDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDPPLSSNVSLSLFV 552
EDT QGAPLSS+VSINSNTG+LYAL SFDYEQFRDL+LL+TASDSG+PPLSSNVSL+LFV
Sbjct: 493 EDTLQGAPLSSFVSINSNTGVLYALRSFDYEQFRDLKLLVTASDSGNPPLSSNVSLNLFV 552
Query: 553 LDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQNAWLSYSLLKSS 612
LDQNDN PEILYP PTDGSTGVELAPRSA+ GYLVTKVVAVDRDSGQNAWLSY LLK+S
Sbjct: 553 LDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKAS 612
Query: 613 EPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTLTVAVADSIPDVL 672
EPGLF+VGLHTGEVRTARALLDRDALKQ LVV VQDHGQPPLSATVTLTVAVAD IPD+L
Sbjct: 613 EPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRIPDIL 672
Query: 673 ADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWHKSRLLHAEGSRL 732
ADLGSL+PSA P+DS LTLYLVVAVAAVSCVFLAFV VLLAL+LRRWHKSRLL A G L
Sbjct: 673 ADLGSLEPSAKPNDSDLTLYLVVAVAAVSCVFLAFVIVLLALRLRRWHKSRLLQASGGGL 732
Query: 733 AGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLISRESCEKSEPLL 792
A P SHFVG DGVRAFLQTYSHEVSLTADSRKSHLIF QP+YADTLIS+ESCEKSEPLL
Sbjct: 733 ASTPGSHFVGADGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLISQESCEKSEPLL 792
Query: 793 ITQDLLETKGDPNL 806
ITQDLLE KGD NL
Sbjct: 793 ITQDLLEMKGDSNL 806
>gi|14196474 protocadherin gamma subfamily A, 6 isoform 2 precursor
[Homo sapiens]
Length = 818
Score = 1163 bits (3009), Expect = 0.0
Identities = 595/810 (73%), Positives = 675/810 (83%), Gaps = 1/810 (0%)
Query: 1 MAAPPARPDHTRLLQICLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELA 60
MA P P + + + LLG L A QI YS+ EE E+GS VGNI KDLGL P+ELA
Sbjct: 1 MAPPQRHPQRSEQVLLLTLLGTLWGAAAAQIRYSIPEELEKGSFVGNIVKDLGLEPQELA 60
Query: 61 ERGVRIVSRGRTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVE 120
E GVRIVSRGR QLF+LNPR+G+LVTAGRIDREELC +SP C+ + IL+ED + + VE
Sbjct: 61 EHGVRIVSRGRMQLFSLNPRNGSLVTAGRIDREELCAQSPRCLVSFNILVEDKLNLYPVE 120
Query: 121 VEIIDVNDNPPSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSL 180
VEI+D+NDN P F E+ E+K+ EN P +RFPL E +DPDVG+NSLQG++L+ N +FS+
Sbjct: 121 VEIVDINDNTPRFLKEELEVKILENAAPSSRFPLMEVYDPDVGMNSLQGFKLSGNSHFSV 180
Query: 181 DVQSGADGIKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAP 240
DVQS A G KYPELVLE LDRE EAV+ LVLTA DGGDPVRS A+IL+ ++D NDN P
Sbjct: 181 DVQSEAHGPKYPELVLEGTLDREGEAVYRLVLTAMDGGDPVRSSVAQILVTVLDVNDNTP 240
Query: 241 VFTQPEYHVSVRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGD 300
+FTQP Y VSV EN+PVGT +L V ATD DEG +G+VTYSF K+ +KISQ+F LN L+G+
Sbjct: 241 MFTQPVYRVSVPENLPVGTPVLAVTATDQDEGVHGEVTYSFVKITEKISQIFCLNVLTGE 300
Query: 301 ITILGGLDYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESS 360
I+ LDYEDS FY++ VEA DGPGLR R+KVL+T+LD NDN PEV VTS + ++ ES+
Sbjct: 301 ISTSANLDYEDSSFYELGVEARDGPGLRDRAKVLITILDVNDNVPEVVVTSGSRTIAESA 360
Query: 361 SPGTVIALFNVHDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNI 420
PGTVIALF V D DSG NGLVTCSIP +LPF LEK+ GNYYRL+T+ LDREEV YNI
Sbjct: 361 PPGTVIALFQVFDRDSGLNGLVTCSIPRSLPFELEKSVGNYYRLVTNAALDREEVFLYNI 420
Query: 421 TVTATDQGTPPLSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPD 480
TVTATD+GTPPLSTET ISL V D NDNPPTFPH+SYS Y+ ENNPRGASI S+ A DPD
Sbjct: 421 TVTATDKGTPPLSTETIISLNVADTNDNPPTFPHSSYSVYVLENNPRGASIFSVNALDPD 480
Query: 481 SGDNARITYSLAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDP 540
NA+++YSLAEDT QGAPLSSYVSINS+TGILYAL SFDYEQ RDLQL +TASDSGDP
Sbjct: 481 VDQNAQVSYSLAEDTLQGAPLSSYVSINSDTGILYALRSFDYEQLRDLQLWVTASDSGDP 540
Query: 541 PLSSNVSLSLFVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQ 600
PLSSNVSLSLFVLDQNDN PEILYP PTDGSTGVELAPRSA+ GYLVTKVVAVDRDSGQ
Sbjct: 541 PLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQ 600
Query: 601 NAWLSYSLLKSSEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTL 660
NAWLSY LLK+SEPGLF+VGLHTGEVRTARALLDRDALKQ LVV VQDHGQPPLSATVTL
Sbjct: 601 NAWLSYRLLKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTL 660
Query: 661 TVAVADSIPDVLADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWH 720
TVAVAD IPD+LADLGSL+PSA P+DS LTLYLVVAVAAVSCVFLAFV VLLAL+L+RWH
Sbjct: 661 TVAVADRIPDILADLGSLEPSAKPNDSDLTLYLVVAVAAVSCVFLAFVIVLLALRLQRWH 720
Query: 721 KSRLLHAEGSRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLI 780
KSRLL A G LA +P SHFVGV+GVRAFLQTYSHEVSLTADSRKSHLIF QP+YADTLI
Sbjct: 721 KSRLLQASGGGLASMPGSHFVGVEGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLI 780
Query: 781 SRESCEKSEPLLITQDLLETKGDP-NLQVS 809
++ES EKSEPLLITQDLLETKG+P LQVS
Sbjct: 781 NQESYEKSEPLLITQDLLETKGEPRQLQVS 810
>gi|11056065 protocadherin gamma subfamily A, 6 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 1161 bits (3004), Expect = 0.0
Identities = 591/804 (73%), Positives = 671/804 (83%)
Query: 1 MAAPPARPDHTRLLQICLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELA 60
MA P P + + + LLG L A QI YS+ EE E+GS VGNI KDLGL P+ELA
Sbjct: 1 MAPPQRHPQRSEQVLLLTLLGTLWGAAAAQIRYSIPEELEKGSFVGNIVKDLGLEPQELA 60
Query: 61 ERGVRIVSRGRTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVE 120
E GVRIVSRGR QLF+LNPR+G+LVTAGRIDREELC +SP C+ + IL+ED + + VE
Sbjct: 61 EHGVRIVSRGRMQLFSLNPRNGSLVTAGRIDREELCAQSPRCLVSFNILVEDKLNLYPVE 120
Query: 121 VEIIDVNDNPPSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSL 180
VEI+D+NDN P F E+ E+K+ EN P +RFPL E +DPDVG+NSLQG++L+ N +FS+
Sbjct: 121 VEIVDINDNTPRFLKEELEVKILENAAPSSRFPLMEVYDPDVGMNSLQGFKLSGNSHFSV 180
Query: 181 DVQSGADGIKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAP 240
DVQS A G KYPELVLE LDRE EAV+ LVLTA DGGDPVRS A+IL+ ++D NDN P
Sbjct: 181 DVQSEAHGPKYPELVLEGTLDREGEAVYRLVLTAMDGGDPVRSSVAQILVTVLDVNDNTP 240
Query: 241 VFTQPEYHVSVRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGD 300
+FTQP Y VSV EN+PVGT +L V ATD DEG +G+VTYSF K+ +KISQ+F LN L+G+
Sbjct: 241 MFTQPVYRVSVPENLPVGTPVLAVTATDQDEGVHGEVTYSFVKITEKISQIFCLNVLTGE 300
Query: 301 ITILGGLDYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESS 360
I+ LDYEDS FY++ VEA DGPGLR R+KVL+T+LD NDN PEV VTS + ++ ES+
Sbjct: 301 ISTSANLDYEDSSFYELGVEARDGPGLRDRAKVLITILDVNDNVPEVVVTSGSRTIAESA 360
Query: 361 SPGTVIALFNVHDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNI 420
PGTVIALF V D DSG NGLVTCSIP +LPF LEK+ GNYYRL+T+ LDREEV YNI
Sbjct: 361 PPGTVIALFQVFDRDSGLNGLVTCSIPRSLPFELEKSVGNYYRLVTNAALDREEVFLYNI 420
Query: 421 TVTATDQGTPPLSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPD 480
TVTATD+GTPPLSTET ISL V D NDNPPTFPH+SYS Y+ ENNPRGASI S+ A DPD
Sbjct: 421 TVTATDKGTPPLSTETIISLNVADTNDNPPTFPHSSYSVYVLENNPRGASIFSVNALDPD 480
Query: 481 SGDNARITYSLAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDP 540
NA+++YSLAEDT QGAPLSSYVSINS+TGILYAL SFDYEQ RDLQL +TASDSGDP
Sbjct: 481 VDQNAQVSYSLAEDTLQGAPLSSYVSINSDTGILYALRSFDYEQLRDLQLWVTASDSGDP 540
Query: 541 PLSSNVSLSLFVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQ 600
PLSSNVSLSLFVLDQNDN PEILYP PTDGSTGVELAPRSA+ GYLVTKVVAVDRDSGQ
Sbjct: 541 PLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQ 600
Query: 601 NAWLSYSLLKSSEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTL 660
NAWLSY LLK+SEPGLF+VGLHTGEVRTARALLDRDALKQ LVV VQDHGQPPLSATVTL
Sbjct: 601 NAWLSYRLLKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTL 660
Query: 661 TVAVADSIPDVLADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWH 720
TVAVAD IPD+LADLGSL+PSA P+DS LTLYLVVAVAAVSCVFLAFV VLLAL+L+RWH
Sbjct: 661 TVAVADRIPDILADLGSLEPSAKPNDSDLTLYLVVAVAAVSCVFLAFVIVLLALRLQRWH 720
Query: 721 KSRLLHAEGSRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLI 780
KSRLL A G LA +P SHFVGV+GVRAFLQTYSHEVSLTADSRKSHLIF QP+YADTLI
Sbjct: 721 KSRLLQASGGGLASMPGSHFVGVEGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLI 780
Query: 781 SRESCEKSEPLLITQDLLETKGDP 804
++ES EKSEPLLITQDLLETKG+P
Sbjct: 781 NQESYEKSEPLLITQDLLETKGEP 804
>gi|14196471 protocadherin gamma subfamily A, 5 isoform 2 precursor
[Homo sapiens]
Length = 813
Score = 1143 bits (2957), Expect = 0.0
Identities = 592/809 (73%), Positives = 664/809 (82%)
Query: 1 MAAPPARPDHTRLLQICLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELA 60
MA+PP LL +LLG L E + QI YS+ EE ++GS VGNIAKDLGL P+ELA
Sbjct: 1 MASPPRGWGCGELLLPFMLLGTLCEPGSGQIRYSMPEELDKGSFVGNIAKDLGLEPQELA 60
Query: 61 ERGVRIVSRGRTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVE 120
ERGVRIVSRGRTQLFALNPRSG+LVTAGRIDREELC +SP CV N IL+E+ +KI VE
Sbjct: 61 ERGVRIVSRGRTQLFALNPRSGSLVTAGRIDREELCAQSPLCVVNFNILVENKMKIYGVE 120
Query: 121 VEIIDVNDNPPSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSL 180
VEIID+NDN P F E+ ++KV EN G R LP A D DVGVNSL+ YQL+SN +FSL
Sbjct: 121 VEIIDINDNFPRFRDEELKVKVNENAAAGTRLVLPFARDADVGVNSLRSYQLSSNLHFSL 180
Query: 181 DVQSGADGIKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAP 240
DV SG DG KYPELVLE+ LDRE+E VH L+LTA DGGDPV SGT I + ++D NDNAP
Sbjct: 181 DVVSGTDGQKYPELVLEQPLDREKETVHDLLLTALDGGDPVLSGTTHIRVTVLDANDNAP 240
Query: 241 VFTQPEYHVSVRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGD 300
+FT EY VSV EN+PVGTRLL + ATDPDEG NG +TYSFR +KIS+ FQL+S G+
Sbjct: 241 LFTPSEYSVSVPENIPVGTRLLMLTATDPDEGINGKLTYSFRNEEEKISETFQLDSNLGE 300
Query: 301 ITILGGLDYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESS 360
I+ L LDYE+S FY ++V A DG L A +KV+VTV D NDNAPEV +TSLTSS+ E
Sbjct: 301 ISTLQSLDYEESRFYLMEVVAQDGGALVASAKVVVTVQDVNDNAPEVILTSLTSSISEDC 360
Query: 361 SPGTVIALFNVHDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNI 420
PGTVIALF+VHD DSG NG + CSIP NLPF LEK+ NYY LLT R LDREE S+YNI
Sbjct: 361 LPGTVIALFSVHDGDSGENGEIACSIPRNLPFKLEKSVDNYYHLLTTRDLDREETSDYNI 420
Query: 421 TVTATDQGTPPLSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPD 480
T+T D GTPPLSTE+HI L+V D+NDNPP FP ASYS + ENNPRG SI S+TA DPD
Sbjct: 421 TLTVMDHGTPPLSTESHIPLKVADVNDNPPNFPQASYSTSVTENNPRGVSIFSVTAHDPD 480
Query: 481 SGDNARITYSLAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDP 540
SGDNAR+TYSLAEDTFQGAPLSSYVSINS+TG+LYAL SFDYEQ RDLQL +TASDSG+P
Sbjct: 481 SGDNARVTYSLAEDTFQGAPLSSYVSINSDTGVLYALRSFDYEQLRDLQLWVTASDSGNP 540
Query: 541 PLSSNVSLSLFVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQ 600
PLSSNVSLSLFVLDQNDN PEILYP PTDGSTGVELAPRSA+ GYLVTKVVAVD+DSGQ
Sbjct: 541 PLSSNVSLSLFVLDQNDNTPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQ 600
Query: 601 NAWLSYSLLKSSEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTL 660
NAWLSY LLK+SEPGLFAVGLHTGEVRTARALLDRDALKQ LVV V+DHGQPPLSAT T+
Sbjct: 601 NAWLSYRLLKASEPGLFAVGLHTGEVRTARALLDRDALKQSLVVAVEDHGQPPLSATFTV 660
Query: 661 TVAVADSIPDVLADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWH 720
TVAVAD IPD+LADLGS+K DP+D LTLYLVVAVAAVSCVFLAFV VLL L+LRRWH
Sbjct: 661 TVAVADRIPDILADLGSIKTPIDPEDLDLTLYLVVAVAAVSCVFLAFVIVLLVLRLRRWH 720
Query: 721 KSRLLHAEGSRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLI 780
KSRLL AEGSRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIF QP+YADTL+
Sbjct: 721 KSRLLQAEGSRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLL 780
Query: 781 SRESCEKSEPLLITQDLLETKGDPNLQVS 809
S ESCEKSEPLL++ + K + +QVS
Sbjct: 781 SEESCEKSEPLLMSDKVDANKEERRVQVS 809
>gi|11056024 protocadherin gamma subfamily A, 5 isoform 1 precursor
[Homo sapiens]
Length = 931
Score = 1140 bits (2949), Expect = 0.0
Identities = 590/807 (73%), Positives = 662/807 (82%)
Query: 1 MAAPPARPDHTRLLQICLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELA 60
MA+PP LL +LLG L E + QI YS+ EE ++GS VGNIAKDLGL P+ELA
Sbjct: 1 MASPPRGWGCGELLLPFMLLGTLCEPGSGQIRYSMPEELDKGSFVGNIAKDLGLEPQELA 60
Query: 61 ERGVRIVSRGRTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVE 120
ERGVRIVSRGRTQLFALNPRSG+LVTAGRIDREELC +SP CV N IL+E+ +KI VE
Sbjct: 61 ERGVRIVSRGRTQLFALNPRSGSLVTAGRIDREELCAQSPLCVVNFNILVENKMKIYGVE 120
Query: 121 VEIIDVNDNPPSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSL 180
VEIID+NDN P F E+ ++KV EN G R LP A D DVGVNSL+ YQL+SN +FSL
Sbjct: 121 VEIIDINDNFPRFRDEELKVKVNENAAAGTRLVLPFARDADVGVNSLRSYQLSSNLHFSL 180
Query: 181 DVQSGADGIKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAP 240
DV SG DG KYPELVLE+ LDRE+E VH L+LTA DGGDPV SGT I + ++D NDNAP
Sbjct: 181 DVVSGTDGQKYPELVLEQPLDREKETVHDLLLTALDGGDPVLSGTTHIRVTVLDANDNAP 240
Query: 241 VFTQPEYHVSVRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGD 300
+FT EY VSV EN+PVGTRLL + ATDPDEG NG +TYSFR +KIS+ FQL+S G+
Sbjct: 241 LFTPSEYSVSVPENIPVGTRLLMLTATDPDEGINGKLTYSFRNEEEKISETFQLDSNLGE 300
Query: 301 ITILGGLDYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESS 360
I+ L LDYE+S FY ++V A DG L A +KV+VTV D NDNAPEV +TSLTSS+ E
Sbjct: 301 ISTLQSLDYEESRFYLMEVVAQDGGALVASAKVVVTVQDVNDNAPEVILTSLTSSISEDC 360
Query: 361 SPGTVIALFNVHDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNI 420
PGTVIALF+VHD DSG NG + CSIP NLPF LEK+ NYY LLT R LDREE S+YNI
Sbjct: 361 LPGTVIALFSVHDGDSGENGEIACSIPRNLPFKLEKSVDNYYHLLTTRDLDREETSDYNI 420
Query: 421 TVTATDQGTPPLSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPD 480
T+T D GTPPLSTE+HI L+V D+NDNPP FP ASYS + ENNPRG SI S+TA DPD
Sbjct: 421 TLTVMDHGTPPLSTESHIPLKVADVNDNPPNFPQASYSTSVTENNPRGVSIFSVTAHDPD 480
Query: 481 SGDNARITYSLAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDP 540
SGDNAR+TYSLAEDTFQGAPLSSYVSINS+TG+LYAL SFDYEQ RDLQL +TASDSG+P
Sbjct: 481 SGDNARVTYSLAEDTFQGAPLSSYVSINSDTGVLYALRSFDYEQLRDLQLWVTASDSGNP 540
Query: 541 PLSSNVSLSLFVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQ 600
PLSSNVSLSLFVLDQNDN PEILYP PTDGSTGVELAPRSA+ GYLVTKVVAVD+DSGQ
Sbjct: 541 PLSSNVSLSLFVLDQNDNTPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQ 600
Query: 601 NAWLSYSLLKSSEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTL 660
NAWLSY LLK+SEPGLFAVGLHTGEVRTARALLDRDALKQ LVV V+DHGQPPLSAT T+
Sbjct: 601 NAWLSYRLLKASEPGLFAVGLHTGEVRTARALLDRDALKQSLVVAVEDHGQPPLSATFTV 660
Query: 661 TVAVADSIPDVLADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWH 720
TVAVAD IPD+LADLGS+K DP+D LTLYLVVAVAAVSCVFLAFV VLL L+LRRWH
Sbjct: 661 TVAVADRIPDILADLGSIKTPIDPEDLDLTLYLVVAVAAVSCVFLAFVIVLLVLRLRRWH 720
Query: 721 KSRLLHAEGSRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLI 780
KSRLL AEGSRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIF QP+YADTL+
Sbjct: 721 KSRLLQAEGSRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLL 780
Query: 781 SRESCEKSEPLLITQDLLETKGDPNLQ 807
S ESCEKSEPLL++ + K + +Q
Sbjct: 781 SEESCEKSEPLLMSDKVDANKEERRVQ 807
>gi|14270484 protocadherin gamma subfamily A, 8 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 1132 bits (2927), Expect = 0.0
Identities = 577/803 (71%), Positives = 656/803 (81%)
Query: 1 MAAPPARPDHTRLLQICLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELA 60
MAAP +RP L+ +C LLG L EI QI YSV EE ++GS VGNI+KDLGL PR+LA
Sbjct: 1 MAAPQSRPRRGELILLCALLGTLWEIGRGQIRYSVPEETDKGSFVGNISKDLGLDPRKLA 60
Query: 61 ERGVRIVSRGRTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVE 120
+ GVRIVSRGRTQLFALNPRSG+L+TAGRIDREELC +SP C+ N+ L+ED K+ VE
Sbjct: 61 KHGVRIVSRGRTQLFALNPRSGSLITAGRIDREELCAQSPRCLININTLVEDKGKLFGVE 120
Query: 121 VEIIDVNDNPPSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSL 180
+EIID+NDN P F E E+K+ E PGAR+PLPEA DPDVGVNSLQ YQL+ N +FSL
Sbjct: 121 IEIIDINDNNPKFQVEDLEVKINEIAVPGARYPLPEAVDPDVGVNSLQSYQLSPNHHFSL 180
Query: 181 DVQSGADGIKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAP 240
DVQ+G +G PELVLERALDREEEA HHLVLTA DGG P RS T RI + ++DTNDNAP
Sbjct: 181 DVQTGDNGAINPELVLERALDREEEAAHHLVLTASDGGKPPRSSTVRIHVTVLDTNDNAP 240
Query: 241 VFTQPEYHVSVRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGD 300
VF P Y V V EN+P GTRLLTV A+DPDEG NG V Y FRK+ +K + LFQLN +G+
Sbjct: 241 VFPHPIYRVKVLENMPPGTRLLTVTASDPDEGINGKVAYKFRKINEKQTPLFQLNENTGE 300
Query: 301 ITILGGLDYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESS 360
I+I LDYE+ FY+++++A D L R+K+L++V D NDN PEV +TSL S V E+S
Sbjct: 301 ISIAKSLDYEECSFYEMEIQAEDVGALLGRTKLLISVEDVNDNRPEVIITSLFSPVLENS 360
Query: 361 SPGTVIALFNVHDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNI 420
PGTVIA +VHD DSG NG V C DNLPF LEK+ GNYYRL+T + LDRE VS YNI
Sbjct: 361 LPGTVIAFLSVHDQDSGKNGQVVCYTRDNLPFKLEKSIGNYYRLVTRKYLDRENVSIYNI 420
Query: 421 TVTATDQGTPPLSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPD 480
TV A+D GTPPLSTET I+L V DINDNPPTFPHASYSAYI ENN RGASI S+TA DPD
Sbjct: 421 TVMASDLGTPPLSTETQIALHVADINDNPPTFPHASYSAYILENNLRGASIFSLTAHDPD 480
Query: 481 SGDNARITYSLAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDP 540
S +NA++TYS+ EDT QGAPLSSY+SINS+TG+LYAL SFDYEQ RDLQLL+TASDSGDP
Sbjct: 481 SQENAQVTYSVTEDTLQGAPLSSYISINSDTGVLYALQSFDYEQIRDLQLLVTASDSGDP 540
Query: 541 PLSSNVSLSLFVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQ 600
PLSSN+SLSLFVLDQNDN PEILYP PTDGSTGVELAPRSA+ GYLVTKVVAVDRDSGQ
Sbjct: 541 PLSSNMSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAERGYLVTKVVAVDRDSGQ 600
Query: 601 NAWLSYSLLKSSEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTL 660
NAWLSY LLK+SEPGLF+VGLHTGEVRTARALLDRDALKQ LVV VQDHGQPPLSATVTL
Sbjct: 601 NAWLSYRLLKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTL 660
Query: 661 TVAVADSIPDVLADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWH 720
TVAVADSIP+VL +LGSLKPS DP+DS LTLYLVVAVAA+SCVFLAFV VLL L+LRRWH
Sbjct: 661 TVAVADSIPEVLTELGSLKPSVDPNDSSLTLYLVVAVAAISCVFLAFVAVLLGLRLRRWH 720
Query: 721 KSRLLHAEGSRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLI 780
KSRLL G RL GVPASHFVGV+ V+AFLQTYS EVSLTADSRKSHLIF QP+YAD LI
Sbjct: 721 KSRLLQDSGGRLVGVPASHFVGVEEVQAFLQTYSQEVSLTADSRKSHLIFPQPNYADMLI 780
Query: 781 SRESCEKSEPLLITQDLLETKGD 803
S+E CEK++ LL + D E K +
Sbjct: 781 SQEGCEKNDSLLTSVDFHEYKNE 803
>gi|7662056 protocadherin gamma subfamily A, 8 isoform 2 precursor
[Homo sapiens]
Length = 820
Score = 1132 bits (2927), Expect = 0.0
Identities = 577/803 (71%), Positives = 656/803 (81%)
Query: 1 MAAPPARPDHTRLLQICLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELA 60
MAAP +RP L+ +C LLG L EI QI YSV EE ++GS VGNI+KDLGL PR+LA
Sbjct: 1 MAAPQSRPRRGELILLCALLGTLWEIGRGQIRYSVPEETDKGSFVGNISKDLGLDPRKLA 60
Query: 61 ERGVRIVSRGRTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVE 120
+ GVRIVSRGRTQLFALNPRSG+L+TAGRIDREELC +SP C+ N+ L+ED K+ VE
Sbjct: 61 KHGVRIVSRGRTQLFALNPRSGSLITAGRIDREELCAQSPRCLININTLVEDKGKLFGVE 120
Query: 121 VEIIDVNDNPPSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSL 180
+EIID+NDN P F E E+K+ E PGAR+PLPEA DPDVGVNSLQ YQL+ N +FSL
Sbjct: 121 IEIIDINDNNPKFQVEDLEVKINEIAVPGARYPLPEAVDPDVGVNSLQSYQLSPNHHFSL 180
Query: 181 DVQSGADGIKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAP 240
DVQ+G +G PELVLERALDREEEA HHLVLTA DGG P RS T RI + ++DTNDNAP
Sbjct: 181 DVQTGDNGAINPELVLERALDREEEAAHHLVLTASDGGKPPRSSTVRIHVTVLDTNDNAP 240
Query: 241 VFTQPEYHVSVRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGD 300
VF P Y V V EN+P GTRLLTV A+DPDEG NG V Y FRK+ +K + LFQLN +G+
Sbjct: 241 VFPHPIYRVKVLENMPPGTRLLTVTASDPDEGINGKVAYKFRKINEKQTPLFQLNENTGE 300
Query: 301 ITILGGLDYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESS 360
I+I LDYE+ FY+++++A D L R+K+L++V D NDN PEV +TSL S V E+S
Sbjct: 301 ISIAKSLDYEECSFYEMEIQAEDVGALLGRTKLLISVEDVNDNRPEVIITSLFSPVLENS 360
Query: 361 SPGTVIALFNVHDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNI 420
PGTVIA +VHD DSG NG V C DNLPF LEK+ GNYYRL+T + LDRE VS YNI
Sbjct: 361 LPGTVIAFLSVHDQDSGKNGQVVCYTRDNLPFKLEKSIGNYYRLVTRKYLDRENVSIYNI 420
Query: 421 TVTATDQGTPPLSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPD 480
TV A+D GTPPLSTET I+L V DINDNPPTFPHASYSAYI ENN RGASI S+TA DPD
Sbjct: 421 TVMASDLGTPPLSTETQIALHVADINDNPPTFPHASYSAYILENNLRGASIFSLTAHDPD 480
Query: 481 SGDNARITYSLAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDP 540
S +NA++TYS+ EDT QGAPLSSY+SINS+TG+LYAL SFDYEQ RDLQLL+TASDSGDP
Sbjct: 481 SQENAQVTYSVTEDTLQGAPLSSYISINSDTGVLYALQSFDYEQIRDLQLLVTASDSGDP 540
Query: 541 PLSSNVSLSLFVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQ 600
PLSSN+SLSLFVLDQNDN PEILYP PTDGSTGVELAPRSA+ GYLVTKVVAVDRDSGQ
Sbjct: 541 PLSSNMSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAERGYLVTKVVAVDRDSGQ 600
Query: 601 NAWLSYSLLKSSEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTL 660
NAWLSY LLK+SEPGLF+VGLHTGEVRTARALLDRDALKQ LVV VQDHGQPPLSATVTL
Sbjct: 601 NAWLSYRLLKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTL 660
Query: 661 TVAVADSIPDVLADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWH 720
TVAVADSIP+VL +LGSLKPS DP+DS LTLYLVVAVAA+SCVFLAFV VLL L+LRRWH
Sbjct: 661 TVAVADSIPEVLTELGSLKPSVDPNDSSLTLYLVVAVAAISCVFLAFVAVLLGLRLRRWH 720
Query: 721 KSRLLHAEGSRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLI 780
KSRLL G RL GVPASHFVGV+ V+AFLQTYS EVSLTADSRKSHLIF QP+YAD LI
Sbjct: 721 KSRLLQDSGGRLVGVPASHFVGVEEVQAFLQTYSQEVSLTADSRKSHLIFPQPNYADMLI 780
Query: 781 SRESCEKSEPLLITQDLLETKGD 803
S+E CEK++ LL + D E K +
Sbjct: 781 SQEGCEKNDSLLTSVDFHEYKNE 803
>gi|14196477 protocadherin gamma subfamily A, 7 isoform 2 precursor
[Homo sapiens]
Length = 817
Score = 1129 bits (2919), Expect = 0.0
Identities = 579/810 (71%), Positives = 666/810 (82%), Gaps = 1/810 (0%)
Query: 1 MAAPPARPDHTRLLQICLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELA 60
MAA P D+ + +LLG E A +ILYSV EE ++GS VG+IAKDLGL PRELA
Sbjct: 1 MAAQPRGGDYRGFFLLSILLGTPWEAWAGRILYSVSEETDKGSFVGDIAKDLGLEPRELA 60
Query: 61 ERGVRIVSRGRTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVE 120
ERGVRI+SRGRTQLFALN RSG+LVTAGRIDREE+C +S C+ N IL+ED + + ++
Sbjct: 61 ERGVRIISRGRTQLFALNQRSGSLVTAGRIDREEICAQSARCLVNFNILMEDKMNLYPID 120
Query: 121 VEIIDVNDNPPSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSL 180
VEIID+NDN P F TE+ +K+ EN PG RFPL EA DPDVG NSLQ YQL+ N +FSL
Sbjct: 121 VEIIDINDNVPRFLTEEINVKIMENTAPGVRFPLSEAGDPDVGTNSLQSYQLSPNRHFSL 180
Query: 181 DVQSGADGIKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAP 240
VQSG D KYPELVLER LDREEE VHHLVLTA DGGDP RS TA I + +VD ND+ P
Sbjct: 181 AVQSGDDETKYPELVLERVLDREEERVHHLVLTASDGGDPPRSSTAHIQVTVVDVNDHTP 240
Query: 241 VFTQPEYHVSVRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGD 300
VF+ P+Y V+V ENVPVGTRLLTV A D DEG NG+VTYSFRK+ K+ ++F LNSL+G+
Sbjct: 241 VFSLPQYQVTVPENVPVGTRLLTVHAIDLDEGVNGEVTYSFRKITPKLPKMFHLNSLTGE 300
Query: 301 ITILGGLDYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESS 360
I+ L GLDYE++ FY+++V+A DGPG ++KVL+TVLD NDNAPEVT+TSL+SS+ E +
Sbjct: 301 ISTLEGLDYEETAFYEMEVQAQDGPGSLTKAKVLITVLDVNDNAPEVTMTSLSSSIPEDT 360
Query: 361 SPGTVIALFNVHDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNI 420
GTVIALF + D DSG NG VTC+IP+NLPF LEK+ NYYRL+T + LDRE +S YNI
Sbjct: 361 PLGTVIALFYLQDRDSGKNGEVTCTIPENLPFKLEKSIDNYYRLVTTKNLDRETLSLYNI 420
Query: 421 TVTATDQGTPPLSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPD 480
T+ ATD GTPPLS ETHI +QV D NDNPPTFPH+SYS YI ENNPRGASI +TAQD D
Sbjct: 421 TLKATDGGTPPLSRETHIFMQVADTNDNPPTFPHSSYSVYIAENNPRGASIFLVTAQDHD 480
Query: 481 SGDNARITYSLAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDP 540
S DNA+ITYSLAEDT QGAP+SSYVSINS+TG+LYAL SFDYEQ R+LQL +TA DSGDP
Sbjct: 481 SEDNAQITYSLAEDTIQGAPVSSYVSINSDTGVLYALQSFDYEQLRELQLRVTAHDSGDP 540
Query: 541 PLSSNVSLSLFVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQ 600
PLSSN+SLSLFVLDQNDN PEILYP PTDGSTG+ELAPRSA+ GYLVTKVVAVD+DSGQ
Sbjct: 541 PLSSNMSLSLFVLDQNDNPPEILYPALPTDGSTGMELAPRSAEPGYLVTKVVAVDKDSGQ 600
Query: 601 NAWLSYSLLKSSEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTL 660
NAWLSY LLK+SEPGLFAVGL+TGEVRTARALLDRDALKQ LVV VQDHGQPPLSATVTL
Sbjct: 601 NAWLSYLLLKASEPGLFAVGLYTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTL 660
Query: 661 TVAVADSIPDVLADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWH 720
TVAVADSIP+VLADLGSL+PS P + LTLYLVVAVA VSCVFLAFV VLLAL+LRRWH
Sbjct: 661 TVAVADSIPEVLADLGSLEPSDGPYNYDLTLYLVVAVATVSCVFLAFVLVLLALRLRRWH 720
Query: 721 KSRLLHAEGSRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLI 780
KSRLL A LA VP SHFVG+DGV+AFLQTYSHEVSLTADSRKSHLIF QP+Y D LI
Sbjct: 721 KSRLLQASEGGLANVPTSHFVGMDGVQAFLQTYSHEVSLTADSRKSHLIFPQPNYVDMLI 780
Query: 781 SRESCEKSEPLLITQDLLETKGD-PNLQVS 809
S+ESCEK++ LL + D E K + P++QVS
Sbjct: 781 SQESCEKNDSLLTSVDFQECKENLPSIQVS 810
>gi|11056063 protocadherin gamma subfamily A, 7 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 1125 bits (2911), Expect = 0.0
Identities = 577/808 (71%), Positives = 664/808 (82%), Gaps = 1/808 (0%)
Query: 1 MAAPPARPDHTRLLQICLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELA 60
MAA P D+ + +LLG E A +ILYSV EE ++GS VG+IAKDLGL PRELA
Sbjct: 1 MAAQPRGGDYRGFFLLSILLGTPWEAWAGRILYSVSEETDKGSFVGDIAKDLGLEPRELA 60
Query: 61 ERGVRIVSRGRTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVE 120
ERGVRI+SRGRTQLFALN RSG+LVTAGRIDREE+C +S C+ N IL+ED + + ++
Sbjct: 61 ERGVRIISRGRTQLFALNQRSGSLVTAGRIDREEICAQSARCLVNFNILMEDKMNLYPID 120
Query: 121 VEIIDVNDNPPSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSL 180
VEIID+NDN P F TE+ +K+ EN PG RFPL EA DPDVG NSLQ YQL+ N +FSL
Sbjct: 121 VEIIDINDNVPRFLTEEINVKIMENTAPGVRFPLSEAGDPDVGTNSLQSYQLSPNRHFSL 180
Query: 181 DVQSGADGIKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAP 240
VQSG D KYPELVLER LDREEE VHHLVLTA DGGDP RS TA I + +VD ND+ P
Sbjct: 181 AVQSGDDETKYPELVLERVLDREEERVHHLVLTASDGGDPPRSSTAHIQVTVVDVNDHTP 240
Query: 241 VFTQPEYHVSVRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGD 300
VF+ P+Y V+V ENVPVGTRLLTV A D DEG NG+VTYSFRK+ K+ ++F LNSL+G+
Sbjct: 241 VFSLPQYQVTVPENVPVGTRLLTVHAIDLDEGVNGEVTYSFRKITPKLPKMFHLNSLTGE 300
Query: 301 ITILGGLDYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESS 360
I+ L GLDYE++ FY+++V+A DGPG ++KVL+TVLD NDNAPEVT+TSL+SS+ E +
Sbjct: 301 ISTLEGLDYEETAFYEMEVQAQDGPGSLTKAKVLITVLDVNDNAPEVTMTSLSSSIPEDT 360
Query: 361 SPGTVIALFNVHDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNI 420
GTVIALF + D DSG NG VTC+IP+NLPF LEK+ NYYRL+T + LDRE +S YNI
Sbjct: 361 PLGTVIALFYLQDRDSGKNGEVTCTIPENLPFKLEKSIDNYYRLVTTKNLDRETLSLYNI 420
Query: 421 TVTATDQGTPPLSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPD 480
T+ ATD GTPPLS ETHI +QV D NDNPPTFPH+SYS YI ENNPRGASI +TAQD D
Sbjct: 421 TLKATDGGTPPLSRETHIFMQVADTNDNPPTFPHSSYSVYIAENNPRGASIFLVTAQDHD 480
Query: 481 SGDNARITYSLAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDP 540
S DNA+ITYSLAEDT QGAP+SSYVSINS+TG+LYAL SFDYEQ R+LQL +TA DSGDP
Sbjct: 481 SEDNAQITYSLAEDTIQGAPVSSYVSINSDTGVLYALQSFDYEQLRELQLRVTAHDSGDP 540
Query: 541 PLSSNVSLSLFVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQ 600
PLSSN+SLSLFVLDQNDN PEILYP PTDGSTG+ELAPRSA+ GYLVTKVVAVD+DSGQ
Sbjct: 541 PLSSNMSLSLFVLDQNDNPPEILYPALPTDGSTGMELAPRSAEPGYLVTKVVAVDKDSGQ 600
Query: 601 NAWLSYSLLKSSEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTL 660
NAWLSY LLK+SEPGLFAVGL+TGEVRTARALLDRDALKQ LVV VQDHGQPPLSATVTL
Sbjct: 601 NAWLSYLLLKASEPGLFAVGLYTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTL 660
Query: 661 TVAVADSIPDVLADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWH 720
TVAVADSIP+VLADLGSL+PS P + LTLYLVVAVA VSCVFLAFV VLLAL+LRRWH
Sbjct: 661 TVAVADSIPEVLADLGSLEPSDGPYNYDLTLYLVVAVATVSCVFLAFVLVLLALRLRRWH 720
Query: 721 KSRLLHAEGSRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLI 780
KSRLL A LA VP SHFVG+DGV+AFLQTYSHEVSLTADSRKSHLIF QP+Y D LI
Sbjct: 721 KSRLLQASEGGLANVPTSHFVGMDGVQAFLQTYSHEVSLTADSRKSHLIFPQPNYVDMLI 780
Query: 781 SRESCEKSEPLLITQDLLETKGD-PNLQ 807
S+ESCEK++ LL + D E K + P++Q
Sbjct: 781 SQESCEKNDSLLTSVDFQECKENLPSIQ 808
>gi|11128041 protocadherin gamma subfamily A, 10 isoform 1 precursor
[Homo sapiens]
Length = 936
Score = 1121 bits (2899), Expect = 0.0
Identities = 572/788 (72%), Positives = 646/788 (81%)
Query: 9 DHTRLLQICLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELAERGVRIVS 68
D + L+ +CL G+ E A QI YS+ EE E+GS VGNI+KDLGLAPRELAERGVRIVS
Sbjct: 13 DCSGLVLLCLFFGIPWEAGARQISYSIPEELEKGSFVGNISKDLGLAPRELAERGVRIVS 72
Query: 69 RGRTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVEVEIIDVND 128
RGRTQLF+LNPRSG+L+TAGRIDREELC +S CV + IL+ED VK+ +E+E+ D+ND
Sbjct: 73 RGRTQLFSLNPRSGSLITAGRIDREELCAQSARCVVSFNILVEDRVKLFGIEIEVTDIND 132
Query: 129 NPPSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSLDVQSGADG 188
N P F E ++K+ EN G RFPLPEA DPDVGVNSLQ YQL+ N +FSL VQS A+G
Sbjct: 133 NAPKFQAENLDVKINENVAAGMRFPLPEAIDPDVGVNSLQSYQLSPNKHFSLRVQSRANG 192
Query: 189 IKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAPVFTQPEYH 248
+KYPELVLE +LDREEEA+HHLVLTA DGGDP+RSGT + + + D NDNAPVFT PEY
Sbjct: 193 VKYPELVLEHSLDREEEAIHHLVLTASDGGDPLRSGTVLVSVTVFDANDNAPVFTLPEYR 252
Query: 249 VSVRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGDITILGGLD 308
VSV EN+PVGT+LLTV ATD DEGANG+VTYSFRK+ D FQLN +G+I I LD
Sbjct: 253 VSVPENLPVGTQLLTVTATDRDEGANGEVTYSFRKLPDTQLLKFQLNKYTGEIKISENLD 312
Query: 309 YEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESSSPGTVIAL 368
YE++GFY+I+++A DG A +KVL+TV D NDN+PE+T+TSL S V E S GTV+AL
Sbjct: 313 YEETGFYEIEIQAEDGGAYLATAKVLITVEDVNDNSPELTITSLFSPVTEDSPLGTVVAL 372
Query: 369 FNVHDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNITVTATDQG 428
NVHD DS NG VTCSI LPF LEK+ +YYRL+ HR LDRE+VS YNITVTATD G
Sbjct: 373 LNVHDLDSEQNGQVTCSILAYLPFKLEKSIDSYYRLVIHRALDREQVSSYNITVTATDGG 432
Query: 429 TPPLSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPDSGDNARIT 488
+PPLSTE H LQV DINDNPPTF SY YIPENN RGASI S+TA DPDS +NA+I
Sbjct: 433 SPPLSTEAHFMLQVADINDNPPTFSQVSYFTYIPENNARGASIFSVTALDPDSKENAQII 492
Query: 489 YSLAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDPPLSSNVSL 548
YSLAEDT QG PLSSY+SINS+TG+LYAL SFDYEQF +LQ+ +TASDSGDPPLSSNVSL
Sbjct: 493 YSLAEDTIQGVPLSSYISINSDTGVLYALRSFDYEQFHELQMQVTASDSGDPPLSSNVSL 552
Query: 549 SLFVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQNAWLSYSL 608
SLFVLDQNDN PEILYP PTDGSTGVELAPRSA+ GYLVTKVVAVDRDSGQNAWLSY L
Sbjct: 553 SLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRL 612
Query: 609 LKSSEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTLTVAVADSI 668
LK+SEPGLFAVG HTGEVRTARALLDRDALKQ LVV VQDHGQPPLSATVTLTVAVADSI
Sbjct: 613 LKASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSI 672
Query: 669 PDVLADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWHKSRLLHAE 728
P VLADLGS + A+ + S LTLYLVVAVAAVSCVFLAFV VLLA +LRRWHKSRLL A
Sbjct: 673 PQVLADLGSFESPANSETSDLTLYLVVAVAAVSCVFLAFVIVLLAHRLRRWHKSRLLQAS 732
Query: 729 GSRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLISRESCEKS 788
G L GV SHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIF QP+YADTLIS+ESCEK+
Sbjct: 733 GGGLTGVSGSHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLISQESCEKN 792
Query: 789 EPLLITQD 796
+PL + D
Sbjct: 793 DPLSLLDD 800
>gi|14196448 protocadherin gamma subfamily A, 10 isoform 2 precursor
[Homo sapiens]
Length = 850
Score = 1121 bits (2899), Expect = 0.0
Identities = 572/788 (72%), Positives = 646/788 (81%)
Query: 9 DHTRLLQICLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELAERGVRIVS 68
D + L+ +CL G+ E A QI YS+ EE E+GS VGNI+KDLGLAPRELAERGVRIVS
Sbjct: 13 DCSGLVLLCLFFGIPWEAGARQISYSIPEELEKGSFVGNISKDLGLAPRELAERGVRIVS 72
Query: 69 RGRTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVEVEIIDVND 128
RGRTQLF+LNPRSG+L+TAGRIDREELC +S CV + IL+ED VK+ +E+E+ D+ND
Sbjct: 73 RGRTQLFSLNPRSGSLITAGRIDREELCAQSARCVVSFNILVEDRVKLFGIEIEVTDIND 132
Query: 129 NPPSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSLDVQSGADG 188
N P F E ++K+ EN G RFPLPEA DPDVGVNSLQ YQL+ N +FSL VQS A+G
Sbjct: 133 NAPKFQAENLDVKINENVAAGMRFPLPEAIDPDVGVNSLQSYQLSPNKHFSLRVQSRANG 192
Query: 189 IKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAPVFTQPEYH 248
+KYPELVLE +LDREEEA+HHLVLTA DGGDP+RSGT + + + D NDNAPVFT PEY
Sbjct: 193 VKYPELVLEHSLDREEEAIHHLVLTASDGGDPLRSGTVLVSVTVFDANDNAPVFTLPEYR 252
Query: 249 VSVRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGDITILGGLD 308
VSV EN+PVGT+LLTV ATD DEGANG+VTYSFRK+ D FQLN +G+I I LD
Sbjct: 253 VSVPENLPVGTQLLTVTATDRDEGANGEVTYSFRKLPDTQLLKFQLNKYTGEIKISENLD 312
Query: 309 YEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESSSPGTVIAL 368
YE++GFY+I+++A DG A +KVL+TV D NDN+PE+T+TSL S V E S GTV+AL
Sbjct: 313 YEETGFYEIEIQAEDGGAYLATAKVLITVEDVNDNSPELTITSLFSPVTEDSPLGTVVAL 372
Query: 369 FNVHDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNITVTATDQG 428
NVHD DS NG VTCSI LPF LEK+ +YYRL+ HR LDRE+VS YNITVTATD G
Sbjct: 373 LNVHDLDSEQNGQVTCSILAYLPFKLEKSIDSYYRLVIHRALDREQVSSYNITVTATDGG 432
Query: 429 TPPLSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPDSGDNARIT 488
+PPLSTE H LQV DINDNPPTF SY YIPENN RGASI S+TA DPDS +NA+I
Sbjct: 433 SPPLSTEAHFMLQVADINDNPPTFSQVSYFTYIPENNARGASIFSVTALDPDSKENAQII 492
Query: 489 YSLAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDPPLSSNVSL 548
YSLAEDT QG PLSSY+SINS+TG+LYAL SFDYEQF +LQ+ +TASDSGDPPLSSNVSL
Sbjct: 493 YSLAEDTIQGVPLSSYISINSDTGVLYALRSFDYEQFHELQMQVTASDSGDPPLSSNVSL 552
Query: 549 SLFVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQNAWLSYSL 608
SLFVLDQNDN PEILYP PTDGSTGVELAPRSA+ GYLVTKVVAVDRDSGQNAWLSY L
Sbjct: 553 SLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRL 612
Query: 609 LKSSEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTLTVAVADSI 668
LK+SEPGLFAVG HTGEVRTARALLDRDALKQ LVV VQDHGQPPLSATVTLTVAVADSI
Sbjct: 613 LKASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSI 672
Query: 669 PDVLADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWHKSRLLHAE 728
P VLADLGS + A+ + S LTLYLVVAVAAVSCVFLAFV VLLA +LRRWHKSRLL A
Sbjct: 673 PQVLADLGSFESPANSETSDLTLYLVVAVAAVSCVFLAFVIVLLAHRLRRWHKSRLLQAS 732
Query: 729 GSRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLISRESCEKS 788
G L GV SHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIF QP+YADTLIS+ESCEK+
Sbjct: 733 GGGLTGVSGSHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLISQESCEKN 792
Query: 789 EPLLITQD 796
+PL + D
Sbjct: 793 DPLSLLDD 800
>gi|11056030 protocadherin gamma subfamily A, 2 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 1120 bits (2898), Expect = 0.0
Identities = 574/799 (71%), Positives = 645/799 (80%)
Query: 1 MAAPPARPDHTRLLQICLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELA 60
MAA P +L+ +C LL L E RA QI YSV EE + GS VGNIAKDLGL P LA
Sbjct: 1 MAALQKLPHCRKLVLLCFLLATLWEARAGQIRYSVREEIDRGSFVGNIAKDLGLEPLALA 60
Query: 61 ERGVRIVSRGRTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVE 120
E+GVRIVSRGR+QLFALNPRSG+LVTA RIDREELC +S C+ N ILLED + I VE
Sbjct: 61 EQGVRIVSRGRSQLFALNPRSGSLVTANRIDREELCAQSAPCLLNFNILLEDKLTIYSVE 120
Query: 121 VEIIDVNDNPPSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSL 180
VEI D+NDN P FG E+ E+K++E PG R PL A D DVG N+LQ Y LN N +FSL
Sbjct: 121 VEITDINDNAPRFGVEELELKISETTTPGFRIPLKNAHDADVGENALQKYALNPNDHFSL 180
Query: 181 DVQSGADGIKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAP 240
DV+ GADG KYPELVLER+LDREEEAVHHLVL A DGGDPV SGT+RI + ++D NDNAP
Sbjct: 181 DVRRGADGNKYPELVLERSLDREEEAVHHLVLVASDGGDPVLSGTSRICVKVLDANDNAP 240
Query: 241 VFTQPEYHVSVRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGD 300
VFTQPEY +S+ EN VGTR+LTV ATD DEG V Y K + S++F+L S SG+
Sbjct: 241 VFTQPEYRISIPENTLVGTRILTVTATDADEGYYAQVVYFLEKSPGETSEVFELKSTSGE 300
Query: 301 ITILGGLDYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESS 360
+TI+ LDYED+ F++ID+EA DGPGL R+KV+VTVLD NDNAPE +TS TSSV E S
Sbjct: 301 LTIIKDLDYEDATFHEIDIEAQDGPGLLTRAKVIVTVLDVNDNAPEFYMTSATSSVSEDS 360
Query: 361 SPGTVIALFNVHDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNI 420
PGT+I LFNVHD DSG N TCS+P++LPF LEK+ NYYRL+T R LDRE+ S YNI
Sbjct: 361 LPGTIIGLFNVHDRDSGQNAFTTCSLPEDLPFKLEKSVDNYYRLVTTRALDREQFSFYNI 420
Query: 421 TVTATDQGTPPLSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPD 480
T+TA D G P LST+ HI LQV DINDN P F SYS YIPENNPRGAS+ S+TA DPD
Sbjct: 421 TLTAKDGGNPSLSTDAHILLQVADINDNAPAFSRTSYSTYIPENNPRGASVFSVTAHDPD 480
Query: 481 SGDNARITYSLAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDP 540
S DNA +TYS AEDT QGAPLSSY+SINS+TG+LYAL SFDYEQ RDLQ+ + A DSG+P
Sbjct: 481 SNDNAHVTYSFAEDTVQGAPLSSYISINSDTGVLYALRSFDYEQLRDLQVWVIARDSGNP 540
Query: 541 PLSSNVSLSLFVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQ 600
PLSSNVSLSLFVLDQNDN PEILYP FPTDGSTGVELAPRSA+ GYLVTKVVAVDRDSGQ
Sbjct: 541 PLSSNVSLSLFVLDQNDNAPEILYPAFPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQ 600
Query: 601 NAWLSYSLLKSSEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTL 660
NAWLSY LLK+SEPGLF+VGLHTGEVRTARALLDRDALKQ LVV +QDHGQPPLSATVTL
Sbjct: 601 NAWLSYHLLKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAIQDHGQPPLSATVTL 660
Query: 661 TVAVADSIPDVLADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWH 720
TVAVAD IPD+LADLGSL+PSA P+DS LTLYLVVAVAAVSCVFLAFV VLLA +LRRWH
Sbjct: 661 TVAVADRIPDILADLGSLEPSAIPNDSDLTLYLVVAVAAVSCVFLAFVIVLLAHRLRRWH 720
Query: 721 KSRLLHAEGSRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLI 780
KSRLL A G L G+ +SHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIF QP+YADTLI
Sbjct: 721 KSRLLQASGGSLTGMQSSHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLI 780
Query: 781 SRESCEKSEPLLITQDLLE 799
S+ESCEK + L Q LLE
Sbjct: 781 SQESCEKKDFLSAPQSLLE 799
>gi|14196462 protocadherin gamma subfamily A, 2 isoform 2 precursor
[Homo sapiens]
Length = 823
Score = 1120 bits (2898), Expect = 0.0
Identities = 574/799 (71%), Positives = 645/799 (80%)
Query: 1 MAAPPARPDHTRLLQICLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELA 60
MAA P +L+ +C LL L E RA QI YSV EE + GS VGNIAKDLGL P LA
Sbjct: 1 MAALQKLPHCRKLVLLCFLLATLWEARAGQIRYSVREEIDRGSFVGNIAKDLGLEPLALA 60
Query: 61 ERGVRIVSRGRTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVE 120
E+GVRIVSRGR+QLFALNPRSG+LVTA RIDREELC +S C+ N ILLED + I VE
Sbjct: 61 EQGVRIVSRGRSQLFALNPRSGSLVTANRIDREELCAQSAPCLLNFNILLEDKLTIYSVE 120
Query: 121 VEIIDVNDNPPSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSL 180
VEI D+NDN P FG E+ E+K++E PG R PL A D DVG N+LQ Y LN N +FSL
Sbjct: 121 VEITDINDNAPRFGVEELELKISETTTPGFRIPLKNAHDADVGENALQKYALNPNDHFSL 180
Query: 181 DVQSGADGIKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAP 240
DV+ GADG KYPELVLER+LDREEEAVHHLVL A DGGDPV SGT+RI + ++D NDNAP
Sbjct: 181 DVRRGADGNKYPELVLERSLDREEEAVHHLVLVASDGGDPVLSGTSRICVKVLDANDNAP 240
Query: 241 VFTQPEYHVSVRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGD 300
VFTQPEY +S+ EN VGTR+LTV ATD DEG V Y K + S++F+L S SG+
Sbjct: 241 VFTQPEYRISIPENTLVGTRILTVTATDADEGYYAQVVYFLEKSPGETSEVFELKSTSGE 300
Query: 301 ITILGGLDYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESS 360
+TI+ LDYED+ F++ID+EA DGPGL R+KV+VTVLD NDNAPE +TS TSSV E S
Sbjct: 301 LTIIKDLDYEDATFHEIDIEAQDGPGLLTRAKVIVTVLDVNDNAPEFYMTSATSSVSEDS 360
Query: 361 SPGTVIALFNVHDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNI 420
PGT+I LFNVHD DSG N TCS+P++LPF LEK+ NYYRL+T R LDRE+ S YNI
Sbjct: 361 LPGTIIGLFNVHDRDSGQNAFTTCSLPEDLPFKLEKSVDNYYRLVTTRALDREQFSFYNI 420
Query: 421 TVTATDQGTPPLSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPD 480
T+TA D G P LST+ HI LQV DINDN P F SYS YIPENNPRGAS+ S+TA DPD
Sbjct: 421 TLTAKDGGNPSLSTDAHILLQVADINDNAPAFSRTSYSTYIPENNPRGASVFSVTAHDPD 480
Query: 481 SGDNARITYSLAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDP 540
S DNA +TYS AEDT QGAPLSSY+SINS+TG+LYAL SFDYEQ RDLQ+ + A DSG+P
Sbjct: 481 SNDNAHVTYSFAEDTVQGAPLSSYISINSDTGVLYALRSFDYEQLRDLQVWVIARDSGNP 540
Query: 541 PLSSNVSLSLFVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQ 600
PLSSNVSLSLFVLDQNDN PEILYP FPTDGSTGVELAPRSA+ GYLVTKVVAVDRDSGQ
Sbjct: 541 PLSSNVSLSLFVLDQNDNAPEILYPAFPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQ 600
Query: 601 NAWLSYSLLKSSEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTL 660
NAWLSY LLK+SEPGLF+VGLHTGEVRTARALLDRDALKQ LVV +QDHGQPPLSATVTL
Sbjct: 601 NAWLSYHLLKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAIQDHGQPPLSATVTL 660
Query: 661 TVAVADSIPDVLADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWH 720
TVAVAD IPD+LADLGSL+PSA P+DS LTLYLVVAVAAVSCVFLAFV VLLA +LRRWH
Sbjct: 661 TVAVADRIPDILADLGSLEPSAIPNDSDLTLYLVVAVAAVSCVFLAFVIVLLAHRLRRWH 720
Query: 721 KSRLLHAEGSRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLI 780
KSRLL A G L G+ +SHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIF QP+YADTLI
Sbjct: 721 KSRLLQASGGSLTGMQSSHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLI 780
Query: 781 SRESCEKSEPLLITQDLLE 799
S+ESCEK + L Q LLE
Sbjct: 781 SQESCEKKDFLSAPQSLLE 799
>gi|8850232 protocadherin gamma subfamily A, 12 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 1116 bits (2887), Expect = 0.0
Identities = 576/804 (71%), Positives = 659/804 (81%), Gaps = 2/804 (0%)
Query: 5 PAR--PDHTRLLQICLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELAER 62
PAR D+ L+ + +LLG L E QI YSV EE E+GS VG+I++DLGL PRELAER
Sbjct: 3 PARLHRDYKGLVLLGILLGTLWETGCTQIRYSVPEELEKGSRVGDISRDLGLEPRELAER 62
Query: 63 GVRIVSRGRTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVEVE 122
GVRI+ RGRTQLFALNPRSG+LVTAGRIDREELC + C NL+IL+ED VKI VEVE
Sbjct: 63 GVRIIPRGRTQLFALNPRSGSLVTAGRIDREELCMGAIKCQLNLDILMEDKVKIYGVEVE 122
Query: 123 IIDVNDNPPSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSLDV 182
+ D+NDN P F + EIK++EN RFPLP A+DPD+G NSLQ Y+L+ N +FSL V
Sbjct: 123 VRDINDNAPYFRESELEIKISENAATEMRFPLPHAWDPDIGKNSLQSYELSPNTHFSLIV 182
Query: 183 QSGADGIKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAPVF 242
Q+GADG KYPELVL+RALDREE+A HHLVLTA DGGDPVR+GTARI ++++D NDNAP F
Sbjct: 183 QNGADGSKYPELVLKRALDREEKAAHHLVLTASDGGDPVRTGTARIRVMVLDANDNAPAF 242
Query: 243 TQPEYHVSVRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGDIT 302
QPEY SV EN+ +GT+LL V ATDPDEG N +V YSFR V DK +Q+F+L+ SG I+
Sbjct: 243 AQPEYRASVPENLALGTQLLVVNATDPDEGVNAEVRYSFRYVDDKAAQVFKLDCNSGTIS 302
Query: 303 ILGGLDYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESSSP 362
+G LD+E+SGFY ++V+A D G AR+KVL+TVLD NDNAPEV +TSL SSV E+S
Sbjct: 303 TIGELDHEESGFYQMEVQAMDNAGYSARAKVLITVLDVNDNAPEVVLTSLASSVPENSPR 362
Query: 363 GTVIALFNVHDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNITV 422
GT+IAL NV+D DS NG V C I NLPF LEK+YGNYY L+T LDRE+V YNITV
Sbjct: 363 GTLIALLNVNDQDSEENGQVICFIQGNLPFKLEKSYGNYYSLVTDIVLDREQVPSYNITV 422
Query: 423 TATDQGTPPLSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPDSG 482
TATD+GTPPLSTETHISL V D NDNPP FP ASYSAYIPENNPRG S++S+TA DPD
Sbjct: 423 TATDRGTPPLSTETHISLNVADTNDNPPVFPQASYSAYIPENNPRGVSLVSVTAHDPDCE 482
Query: 483 DNARITYSLAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDPPL 542
+NA+ITYSLAE+T QGA LSSYVSINS+TG+LYAL SFDYEQFRDLQ+ + A D+G PPL
Sbjct: 483 ENAQITYSLAENTIQGASLSSYVSINSDTGVLYALSSFDYEQFRDLQVKVMARDNGHPPL 542
Query: 543 SSNVSLSLFVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQNA 602
SSNVSLSLFVLDQNDN PEILYP PTDGSTGVELAPRSA+ GYLVTKVVAVDRDSGQNA
Sbjct: 543 SSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNA 602
Query: 603 WLSYSLLKSSEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTLTV 662
WLSY LLK+SEPGLF+VGLHTGEVRTARALLDRDALKQ LVV VQDHGQPPLSATVTLTV
Sbjct: 603 WLSYRLLKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTV 662
Query: 663 AVADSIPDVLADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWHKS 722
AVADSIP VLADLGSL+ A+ + S LTLYLVVAVAAVSCVFLAFV +LLAL+LRRWHKS
Sbjct: 663 AVADSIPQVLADLGSLESPANSETSDLTLYLVVAVAAVSCVFLAFVILLLALRLRRWHKS 722
Query: 723 RLLHAEGSRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLISR 782
RLL A G L G PASHFVGVDGV+AFLQTYSHEVSLT DSRKSHLIF QP+YAD L+S+
Sbjct: 723 RLLQASGGGLTGAPASHFVGVDGVQAFLQTYSHEVSLTTDSRKSHLIFPQPNYADMLVSQ 782
Query: 783 ESCEKSEPLLITQDLLETKGDPNL 806
ES EKSEPLL++ D + +K L
Sbjct: 783 ESFEKSEPLLLSGDSVFSKDSHGL 806
>gi|14196457 protocadherin gamma subfamily A, 12 isoform 2 precursor
[Homo sapiens]
Length = 820
Score = 1116 bits (2887), Expect = 0.0
Identities = 576/804 (71%), Positives = 659/804 (81%), Gaps = 2/804 (0%)
Query: 5 PAR--PDHTRLLQICLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELAER 62
PAR D+ L+ + +LLG L E QI YSV EE E+GS VG+I++DLGL PRELAER
Sbjct: 3 PARLHRDYKGLVLLGILLGTLWETGCTQIRYSVPEELEKGSRVGDISRDLGLEPRELAER 62
Query: 63 GVRIVSRGRTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVEVE 122
GVRI+ RGRTQLFALNPRSG+LVTAGRIDREELC + C NL+IL+ED VKI VEVE
Sbjct: 63 GVRIIPRGRTQLFALNPRSGSLVTAGRIDREELCMGAIKCQLNLDILMEDKVKIYGVEVE 122
Query: 123 IIDVNDNPPSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSLDV 182
+ D+NDN P F + EIK++EN RFPLP A+DPD+G NSLQ Y+L+ N +FSL V
Sbjct: 123 VRDINDNAPYFRESELEIKISENAATEMRFPLPHAWDPDIGKNSLQSYELSPNTHFSLIV 182
Query: 183 QSGADGIKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAPVF 242
Q+GADG KYPELVL+RALDREE+A HHLVLTA DGGDPVR+GTARI ++++D NDNAP F
Sbjct: 183 QNGADGSKYPELVLKRALDREEKAAHHLVLTASDGGDPVRTGTARIRVMVLDANDNAPAF 242
Query: 243 TQPEYHVSVRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGDIT 302
QPEY SV EN+ +GT+LL V ATDPDEG N +V YSFR V DK +Q+F+L+ SG I+
Sbjct: 243 AQPEYRASVPENLALGTQLLVVNATDPDEGVNAEVRYSFRYVDDKAAQVFKLDCNSGTIS 302
Query: 303 ILGGLDYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESSSP 362
+G LD+E+SGFY ++V+A D G AR+KVL+TVLD NDNAPEV +TSL SSV E+S
Sbjct: 303 TIGELDHEESGFYQMEVQAMDNAGYSARAKVLITVLDVNDNAPEVVLTSLASSVPENSPR 362
Query: 363 GTVIALFNVHDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNITV 422
GT+IAL NV+D DS NG V C I NLPF LEK+YGNYY L+T LDRE+V YNITV
Sbjct: 363 GTLIALLNVNDQDSEENGQVICFIQGNLPFKLEKSYGNYYSLVTDIVLDREQVPSYNITV 422
Query: 423 TATDQGTPPLSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPDSG 482
TATD+GTPPLSTETHISL V D NDNPP FP ASYSAYIPENNPRG S++S+TA DPD
Sbjct: 423 TATDRGTPPLSTETHISLNVADTNDNPPVFPQASYSAYIPENNPRGVSLVSVTAHDPDCE 482
Query: 483 DNARITYSLAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDPPL 542
+NA+ITYSLAE+T QGA LSSYVSINS+TG+LYAL SFDYEQFRDLQ+ + A D+G PPL
Sbjct: 483 ENAQITYSLAENTIQGASLSSYVSINSDTGVLYALSSFDYEQFRDLQVKVMARDNGHPPL 542
Query: 543 SSNVSLSLFVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQNA 602
SSNVSLSLFVLDQNDN PEILYP PTDGSTGVELAPRSA+ GYLVTKVVAVDRDSGQNA
Sbjct: 543 SSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNA 602
Query: 603 WLSYSLLKSSEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTLTV 662
WLSY LLK+SEPGLF+VGLHTGEVRTARALLDRDALKQ LVV VQDHGQPPLSATVTLTV
Sbjct: 603 WLSYRLLKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTV 662
Query: 663 AVADSIPDVLADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWHKS 722
AVADSIP VLADLGSL+ A+ + S LTLYLVVAVAAVSCVFLAFV +LLAL+LRRWHKS
Sbjct: 663 AVADSIPQVLADLGSLESPANSETSDLTLYLVVAVAAVSCVFLAFVILLLALRLRRWHKS 722
Query: 723 RLLHAEGSRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLISR 782
RLL A G L G PASHFVGVDGV+AFLQTYSHEVSLT DSRKSHLIF QP+YAD L+S+
Sbjct: 723 RLLQASGGGLTGAPASHFVGVDGVQAFLQTYSHEVSLTTDSRKSHLIFPQPNYADMLVSQ 782
Query: 783 ESCEKSEPLLITQDLLETKGDPNL 806
ES EKSEPLL++ D + +K L
Sbjct: 783 ESFEKSEPLLLSGDSVFSKDSHGL 806
>gi|14196451 protocadherin gamma subfamily A, 11 isoform 2 precursor
[Homo sapiens]
Length = 837
Score = 1112 bits (2875), Expect = 0.0
Identities = 565/807 (70%), Positives = 658/807 (81%), Gaps = 3/807 (0%)
Query: 1 MAAPPARPDHTRLLQI-CLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPREL 59
MA R D +RLL + C+ LG L RA QI YSV EE E+GS VGNI+KDLGL PREL
Sbjct: 1 MANRLQRGDRSRLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPREL 60
Query: 60 AERGVRIVSRGRTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRV 119
A+RGVRIVSRG+TQLFA+NPRSG+L+TAGRIDREELC+ +C N+E+L+EDT+KI V
Sbjct: 61 AKRGVRIVSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGV 120
Query: 120 EVEIIDVNDNPPSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFS 179
EVEIID+NDN PSF ++ EIKV+E+ PGARF LP A DPDVGVNSLQ YQL+ N YFS
Sbjct: 121 EVEIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFS 180
Query: 180 LDVQSGADGIKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNA 239
L ++ DG K PELVLE +LDRE+EA H L+LTA DGGDP+R G I ++++D ND+
Sbjct: 181 LQLRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHI 240
Query: 240 PVFTQPEYHVSVRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSG 299
P+FTQ Y VSV EN+ GTR+L V ATDPDEG NG+V YSFR + K S++FQL+S +G
Sbjct: 241 PMFTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTG 300
Query: 300 DITILGGLDYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQES 359
++ + G LD+E FY+++++ DG GL + +L+TV+D NDNAPE+T+TS +S+ E+
Sbjct: 301 EVQVRGSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILEN 360
Query: 360 SSPGTVIALFNVHDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYN 419
S PGTVIAL NV D DSG NG V+C IP++LPF LEKTYGNYY+L+T R LDRE V YN
Sbjct: 361 SPPGTVIALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYN 420
Query: 420 ITVTATDQGTPPLSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDP 479
IT+TATDQG+PPLS ETH+ L V D NDNPP FPH+SYSAYIPENNPRGASI S+TA DP
Sbjct: 421 ITLTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDP 480
Query: 480 DSGDNARITYSLAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGD 539
DS NA +TYSL +DT QG PLSSYVSINSNTG+LYAL SFDYEQFRDL+L + A DSGD
Sbjct: 481 DSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGD 540
Query: 540 PPLSSNVSLSLFVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSG 599
PPLSSNVSLSLFVLDQNDN PEILYP PTDGSTGVELAPRSA+ GYLVTKVVAVD+DSG
Sbjct: 541 PPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSG 600
Query: 600 QNAWLSYSLLKSSEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVT 659
QNAWLSY LLK+SEPGLFAVG HTGEVRTARALLDRDALKQ LVV VQDHGQPPLSATVT
Sbjct: 601 QNAWLSYRLLKASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVT 660
Query: 660 LTVAVADSIPDVLADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRW 719
LTVAVADSIP+VLADLGSL+ A+ + S L+LYLVVAVAAVSC+FL FV VLLAL+L RW
Sbjct: 661 LTVAVADSIPEVLADLGSLESLANSETSDLSLYLVVAVAAVSCIFLVFVIVLLALRLWRW 720
Query: 720 HKSRLLHAEGSRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTL 779
HKSRLL A LAG+P SHFVGVDGV+AFLQTYSHEVSL ADS+KSHLIF QP+Y DTL
Sbjct: 721 HKSRLLQASEGGLAGMPTSHFVGVDGVQAFLQTYSHEVSLIADSQKSHLIFPQPNYGDTL 780
Query: 780 ISRESCEKSEPLLITQD--LLETKGDP 804
IS+ESCEKSEPLLI +D ++ K DP
Sbjct: 781 ISQESCEKSEPLLIAEDSAIILGKCDP 807
>gi|11128039 protocadherin gamma subfamily A, 11 isoform 1 precursor
[Homo sapiens]
Length = 935
Score = 1112 bits (2875), Expect = 0.0
Identities = 565/807 (70%), Positives = 658/807 (81%), Gaps = 3/807 (0%)
Query: 1 MAAPPARPDHTRLLQI-CLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPREL 59
MA R D +RLL + C+ LG L RA QI YSV EE E+GS VGNI+KDLGL PREL
Sbjct: 1 MANRLQRGDRSRLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPREL 60
Query: 60 AERGVRIVSRGRTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRV 119
A+RGVRIVSRG+TQLFA+NPRSG+L+TAGRIDREELC+ +C N+E+L+EDT+KI V
Sbjct: 61 AKRGVRIVSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGV 120
Query: 120 EVEIIDVNDNPPSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFS 179
EVEIID+NDN PSF ++ EIKV+E+ PGARF LP A DPDVGVNSLQ YQL+ N YFS
Sbjct: 121 EVEIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFS 180
Query: 180 LDVQSGADGIKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNA 239
L ++ DG K PELVLE +LDRE+EA H L+LTA DGGDP+R G I ++++D ND+
Sbjct: 181 LQLRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHI 240
Query: 240 PVFTQPEYHVSVRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSG 299
P+FTQ Y VSV EN+ GTR+L V ATDPDEG NG+V YSFR + K S++FQL+S +G
Sbjct: 241 PMFTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTG 300
Query: 300 DITILGGLDYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQES 359
++ + G LD+E FY+++++ DG GL + +L+TV+D NDNAPE+T+TS +S+ E+
Sbjct: 301 EVQVRGSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILEN 360
Query: 360 SSPGTVIALFNVHDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYN 419
S PGTVIAL NV D DSG NG V+C IP++LPF LEKTYGNYY+L+T R LDRE V YN
Sbjct: 361 SPPGTVIALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYN 420
Query: 420 ITVTATDQGTPPLSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDP 479
IT+TATDQG+PPLS ETH+ L V D NDNPP FPH+SYSAYIPENNPRGASI S+TA DP
Sbjct: 421 ITLTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDP 480
Query: 480 DSGDNARITYSLAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGD 539
DS NA +TYSL +DT QG PLSSYVSINSNTG+LYAL SFDYEQFRDL+L + A DSGD
Sbjct: 481 DSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGD 540
Query: 540 PPLSSNVSLSLFVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSG 599
PPLSSNVSLSLFVLDQNDN PEILYP PTDGSTGVELAPRSA+ GYLVTKVVAVD+DSG
Sbjct: 541 PPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSG 600
Query: 600 QNAWLSYSLLKSSEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVT 659
QNAWLSY LLK+SEPGLFAVG HTGEVRTARALLDRDALKQ LVV VQDHGQPPLSATVT
Sbjct: 601 QNAWLSYRLLKASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVT 660
Query: 660 LTVAVADSIPDVLADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRW 719
LTVAVADSIP+VLADLGSL+ A+ + S L+LYLVVAVAAVSC+FL FV VLLAL+L RW
Sbjct: 661 LTVAVADSIPEVLADLGSLESLANSETSDLSLYLVVAVAAVSCIFLVFVIVLLALRLWRW 720
Query: 720 HKSRLLHAEGSRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTL 779
HKSRLL A LAG+P SHFVGVDGV+AFLQTYSHEVSL ADS+KSHLIF QP+Y DTL
Sbjct: 721 HKSRLLQASEGGLAGMPTSHFVGVDGVQAFLQTYSHEVSLIADSQKSHLIFPQPNYGDTL 780
Query: 780 ISRESCEKSEPLLITQD--LLETKGDP 804
IS+ESCEKSEPLLI +D ++ K DP
Sbjct: 781 ISQESCEKSEPLLIAEDSAIILGKCDP 807
>gi|14196459 protocadherin gamma subfamily A, 1 isoform 2 precursor
[Homo sapiens]
Length = 823
Score = 1104 bits (2856), Expect = 0.0
Identities = 567/799 (70%), Positives = 651/799 (81%)
Query: 11 TRLLQICLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELAERGVRIVSRG 70
+RL+ +CL L +L+E A I YSV EE ++GS VGNIAKDLGL P+ELA+ GVRIVSRG
Sbjct: 11 SRLMLLCLSLELLLEAGAGNIHYSVPEETDKGSFVGNIAKDLGLQPQELADGGVRIVSRG 70
Query: 71 RTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVEVEIIDVNDNP 130
R LFALNPRSG+L+TA RIDREELC +S C+ + IL+ED +K+ VEVEIID+NDN
Sbjct: 71 RMPLFALNPRSGSLITARRIDREELCAQSMPCLVSFNILVEDKMKLFPVEVEIIDINDNT 130
Query: 131 PSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSLDVQSGADGIK 190
P F E+ E K+ E PG R LP D DVG+NSLQ YQL+SN +FSLDVQ GADG +
Sbjct: 131 PQFQLEELEFKMNEITTPGTRVSLPFGQDLDVGMNSLQSYQLSSNPHFSLDVQQGADGPQ 190
Query: 191 YPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAPVFTQPEYHVS 250
+PE+VL+ LDREEEAVHHL+LTA DGG+PVRSGT RI I +VD NDN P FTQ +YH++
Sbjct: 191 HPEMVLQSPLDREEEAVHHLILTASDGGEPVRSGTLRIYIQVVDANDNPPAFTQAQYHIN 250
Query: 251 VRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGDITILGGLDYE 310
V ENVP+GT+LL V ATDPDEGANG+VTYSF V +++Q+F+L+S +G+I+ LD+E
Sbjct: 251 VPENVPLGTQLLMVNATDPDEGANGEVTYSFHNVDHRVAQIFRLDSYTGEISNKEPLDFE 310
Query: 311 DSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESSSPGTVIALFN 370
+ Y ++V+A DG GL A+ KVL+ VLD NDNAPEVT+TS+T++V E+ PGT+IAL +
Sbjct: 311 EYKMYSMEVQAQDGAGLMAKVKVLIKVLDVNDNAPEVTITSVTTAVPENFPPGTIIALIS 370
Query: 371 VHDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNITVTATDQGTP 430
VHD DSG NG TC IP NLPF LEK NYYRL+T RTLDRE +S YNIT+TA DQGTP
Sbjct: 371 VHDQDSGDNGYTTCFIPGNLPFKLEKLVDNYYRLVTERTLDRELISGYNITITAIDQGTP 430
Query: 431 PLSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPDSGDNARITYS 490
LSTETHISL V DINDN P F SYSAYIPENNPRGASI S+ A D DS +NA+ITYS
Sbjct: 431 ALSTETHISLLVTDINDNSPVFHQDSYSAYIPENNPRGASIFSVRAHDLDSNENAQITYS 490
Query: 491 LAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDPPLSSNVSLSL 550
L EDT QGAPLS+Y+SINS+TG+LYAL SFDYEQFRD+QL + A DSGDPPLSSNVSLSL
Sbjct: 491 LIEDTIQGAPLSAYLSINSDTGVLYALRSFDYEQFRDMQLKVMARDSGDPPLSSNVSLSL 550
Query: 551 FVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQNAWLSYSLLK 610
F+LDQNDN PEILYP PTDGSTGVELAP SA+ GYLVTKVVAVDRDSGQNAWLSY LLK
Sbjct: 551 FLLDQNDNAPEILYPALPTDGSTGVELAPLSAEPGYLVTKVVAVDRDSGQNAWLSYRLLK 610
Query: 611 SSEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTLTVAVADSIPD 670
+SEPGLF+VGLHTGEVRTARALLDRDALKQ LVV VQDHGQPPLSATVTLTVAVAD I D
Sbjct: 611 ASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRISD 670
Query: 671 VLADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWHKSRLLHAEGS 730
+LADLGSL+PSA P+DS LTLYLVVA AAVSCVFLAFV VLLA +LRRWHKSRLL A G
Sbjct: 671 ILADLGSLEPSAKPNDSDLTLYLVVAAAAVSCVFLAFVIVLLAHRLRRWHKSRLLQASGG 730
Query: 731 RLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLISRESCEKSEP 790
LA +P SHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIF QP+YADTLIS+ESCEK
Sbjct: 731 GLASMPGSHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLISQESCEKKGF 790
Query: 791 LLITQDLLETKGDPNLQVS 809
L Q LLE K +P QV+
Sbjct: 791 LSAPQSLLEDKKEPFSQVN 809
>gi|11056032 protocadherin gamma subfamily A, 1 isoform 1 precursor
[Homo sapiens]
Length = 931
Score = 1102 bits (2851), Expect = 0.0
Identities = 565/794 (71%), Positives = 648/794 (81%)
Query: 11 TRLLQICLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELAERGVRIVSRG 70
+RL+ +CL L +L+E A I YSV EE ++GS VGNIAKDLGL P+ELA+ GVRIVSRG
Sbjct: 11 SRLMLLCLSLELLLEAGAGNIHYSVPEETDKGSFVGNIAKDLGLQPQELADGGVRIVSRG 70
Query: 71 RTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVEVEIIDVNDNP 130
R LFALNPRSG+L+TA RIDREELC +S C+ + IL+ED +K+ VEVEIID+NDN
Sbjct: 71 RMPLFALNPRSGSLITARRIDREELCAQSMPCLVSFNILVEDKMKLFPVEVEIIDINDNT 130
Query: 131 PSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSLDVQSGADGIK 190
P F E+ E K+ E PG R LP D DVG+NSLQ YQL+SN +FSLDVQ GADG +
Sbjct: 131 PQFQLEELEFKMNEITTPGTRVSLPFGQDLDVGMNSLQSYQLSSNPHFSLDVQQGADGPQ 190
Query: 191 YPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAPVFTQPEYHVS 250
+PE+VL+ LDREEEAVHHL+LTA DGG+PVRSGT RI I +VD NDN P FTQ +YH++
Sbjct: 191 HPEMVLQSPLDREEEAVHHLILTASDGGEPVRSGTLRIYIQVVDANDNPPAFTQAQYHIN 250
Query: 251 VRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGDITILGGLDYE 310
V ENVP+GT+LL V ATDPDEGANG+VTYSF V +++Q+F+L+S +G+I+ LD+E
Sbjct: 251 VPENVPLGTQLLMVNATDPDEGANGEVTYSFHNVDHRVAQIFRLDSYTGEISNKEPLDFE 310
Query: 311 DSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESSSPGTVIALFN 370
+ Y ++V+A DG GL A+ KVL+ VLD NDNAPEVT+TS+T++V E+ PGT+IAL +
Sbjct: 311 EYKMYSMEVQAQDGAGLMAKVKVLIKVLDVNDNAPEVTITSVTTAVPENFPPGTIIALIS 370
Query: 371 VHDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNITVTATDQGTP 430
VHD DSG NG TC IP NLPF LEK NYYRL+T RTLDRE +S YNIT+TA DQGTP
Sbjct: 371 VHDQDSGDNGYTTCFIPGNLPFKLEKLVDNYYRLVTERTLDRELISGYNITITAIDQGTP 430
Query: 431 PLSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPDSGDNARITYS 490
LSTETHISL V DINDN P F SYSAYIPENNPRGASI S+ A D DS +NA+ITYS
Sbjct: 431 ALSTETHISLLVTDINDNSPVFHQDSYSAYIPENNPRGASIFSVRAHDLDSNENAQITYS 490
Query: 491 LAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDPPLSSNVSLSL 550
L EDT QGAPLS+Y+SINS+TG+LYAL SFDYEQFRD+QL + A DSGDPPLSSNVSLSL
Sbjct: 491 LIEDTIQGAPLSAYLSINSDTGVLYALRSFDYEQFRDMQLKVMARDSGDPPLSSNVSLSL 550
Query: 551 FVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQNAWLSYSLLK 610
F+LDQNDN PEILYP PTDGSTGVELAP SA+ GYLVTKVVAVDRDSGQNAWLSY LLK
Sbjct: 551 FLLDQNDNAPEILYPALPTDGSTGVELAPLSAEPGYLVTKVVAVDRDSGQNAWLSYRLLK 610
Query: 611 SSEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTLTVAVADSIPD 670
+SEPGLF+VGLHTGEVRTARALLDRDALKQ LVV VQDHGQPPLSATVTLTVAVAD I D
Sbjct: 611 ASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRISD 670
Query: 671 VLADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWHKSRLLHAEGS 730
+LADLGSL+PSA P+DS LTLYLVVA AAVSCVFLAFV VLLA +LRRWHKSRLL A G
Sbjct: 671 ILADLGSLEPSAKPNDSDLTLYLVVAAAAVSCVFLAFVIVLLAHRLRRWHKSRLLQASGG 730
Query: 731 RLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLISRESCEKSEP 790
LA +P SHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIF QP+YADTLIS+ESCEK
Sbjct: 731 GLASMPGSHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLISQESCEKKGF 790
Query: 791 LLITQDLLETKGDP 804
L Q LLE K +P
Sbjct: 791 LSAPQSLLEDKKEP 804
>gi|11128043 protocadherin gamma subfamily A, 9 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 1100 bits (2844), Expect = 0.0
Identities = 560/796 (70%), Positives = 641/796 (80%)
Query: 1 MAAPPARPDHTRLLQICLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELA 60
MAAP RL+ +C LLG+L E RA QI YSV EE E+G +VGNI+KDL L PRELA
Sbjct: 1 MAAPTKCQLRGRLVLLCSLLGMLWEARASQIRYSVPEETEKGYIVGNISKDLALEPRELA 60
Query: 61 ERGVRIVSRGRTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVE 120
ER VRIVSRGRTQLF+LNPRSGTLVTAGRIDREELC +SP C+ N ++L+ED VK+ +E
Sbjct: 61 ERRVRIVSRGRTQLFSLNPRSGTLVTAGRIDREELCAQSPRCLVNFKVLVEDRVKLYGIE 120
Query: 121 VEIIDVNDNPPSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSL 180
+E+ D+ND+ P F E E+K+ E PGAR+PLPEA DPDVGVNSLQ YQL+ N +FSL
Sbjct: 121 IEVTDINDSAPKFQAESLEVKINEIAVPGARYPLPEAIDPDVGVNSLQSYQLSPNHHFSL 180
Query: 181 DVQSGADGIKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAP 240
+VQ+G +G PELVLERALDREE HHLVLTA DGG+P RS T RI + ++DTNDNAP
Sbjct: 181 NVQTGDNGAINPELVLERALDREEATAHHLVLTASDGGEPRRSSTVRIHVTVLDTNDNAP 240
Query: 241 VFTQPEYHVSVRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGD 300
VF Q Y V V ENVP GT LLT A+D DEG NG V Y F K+ +K S LFQLN +G+
Sbjct: 241 VFAQRIYRVKVLENVPPGTWLLTATASDLDEGINGKVAYKFWKINEKQSLLFQLNENTGE 300
Query: 301 ITILGGLDYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESS 360
I+ LDYE+ FY+++++A DG GL+ +KVL++V D NDN PEVT+TSL S V+E +
Sbjct: 301 ISTAKSLDYEECSFYEMEIQAEDGGGLKGWTKVLISVEDVNDNRPEVTITSLFSPVREDA 360
Query: 361 SPGTVIALFNVHDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNI 420
GTVI LFN HD DSG NG V CSI +NL FTLE + +YYRLLT + LDRE+ SEYNI
Sbjct: 361 PQGTVILLFNAHDRDSGKNGQVVCSIQENLSFTLENSEEDYYRLLTAQILDREKASEYNI 420
Query: 421 TVTATDQGTPPLSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPD 480
TVTATD+GTPPLSTE HI+LQV DINDNPP F ASYS Y+PENN RG SI S+ A DPD
Sbjct: 421 TVTATDRGTPPLSTEIHITLQVTDINDNPPAFSQASYSVYLPENNARGTSIFSVIAYDPD 480
Query: 481 SGDNARITYSLAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDP 540
S +N+R+ YSLAEDT QG+PLS+YVSINS+TG+LYALCSFDYEQFRDLQ+ +TASDSG P
Sbjct: 481 SNENSRVIYSLAEDTIQGSPLSTYVSINSDTGVLYALCSFDYEQFRDLQMQVTASDSGSP 540
Query: 541 PLSSNVSLSLFVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQ 600
PLSSNVSL LFVLDQNDN PEILYP PTDGSTGVELAPRSA+ GYLVTKVVAVDRDSGQ
Sbjct: 541 PLSSNVSLRLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQ 600
Query: 601 NAWLSYSLLKSSEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTL 660
NAWLSY L K+SEPGLF+VGLHTGEVRTARALLDRDALKQ LVV VQDHGQPPLSATVTL
Sbjct: 601 NAWLSYRLFKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTL 660
Query: 661 TVAVADSIPDVLADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWH 720
TVA+ADSIPD+LADLGSL+ AD + S LTLYLVVAVA VSCVFL FV LLAL+LR WH
Sbjct: 661 TVAIADSIPDILADLGSLQIPADLEASDLTLYLVVAVAVVSCVFLTFVITLLALRLRHWH 720
Query: 721 KSRLLHAEGSRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLI 780
S LL A LAGVP SHFVGVDGVRAFLQTYS E SLTADSRKSHLIF QP+YADTLI
Sbjct: 721 SSHLLRATSDGLAGVPTSHFVGVDGVRAFLQTYSQEFSLTADSRKSHLIFPQPNYADTLI 780
Query: 781 SRESCEKSEPLLITQD 796
S++SCEK+EPL ++ D
Sbjct: 781 SQQSCEKNEPLCVSVD 796
>gi|14270487 protocadherin gamma subfamily A, 9 isoform 2 precursor
[Homo sapiens]
Length = 828
Score = 1100 bits (2844), Expect = 0.0
Identities = 560/796 (70%), Positives = 641/796 (80%)
Query: 1 MAAPPARPDHTRLLQICLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELA 60
MAAP RL+ +C LLG+L E RA QI YSV EE E+G +VGNI+KDL L PRELA
Sbjct: 1 MAAPTKCQLRGRLVLLCSLLGMLWEARASQIRYSVPEETEKGYIVGNISKDLALEPRELA 60
Query: 61 ERGVRIVSRGRTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVE 120
ER VRIVSRGRTQLF+LNPRSGTLVTAGRIDREELC +SP C+ N ++L+ED VK+ +E
Sbjct: 61 ERRVRIVSRGRTQLFSLNPRSGTLVTAGRIDREELCAQSPRCLVNFKVLVEDRVKLYGIE 120
Query: 121 VEIIDVNDNPPSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSL 180
+E+ D+ND+ P F E E+K+ E PGAR+PLPEA DPDVGVNSLQ YQL+ N +FSL
Sbjct: 121 IEVTDINDSAPKFQAESLEVKINEIAVPGARYPLPEAIDPDVGVNSLQSYQLSPNHHFSL 180
Query: 181 DVQSGADGIKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAP 240
+VQ+G +G PELVLERALDREE HHLVLTA DGG+P RS T RI + ++DTNDNAP
Sbjct: 181 NVQTGDNGAINPELVLERALDREEATAHHLVLTASDGGEPRRSSTVRIHVTVLDTNDNAP 240
Query: 241 VFTQPEYHVSVRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGD 300
VF Q Y V V ENVP GT LLT A+D DEG NG V Y F K+ +K S LFQLN +G+
Sbjct: 241 VFAQRIYRVKVLENVPPGTWLLTATASDLDEGINGKVAYKFWKINEKQSLLFQLNENTGE 300
Query: 301 ITILGGLDYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESS 360
I+ LDYE+ FY+++++A DG GL+ +KVL++V D NDN PEVT+TSL S V+E +
Sbjct: 301 ISTAKSLDYEECSFYEMEIQAEDGGGLKGWTKVLISVEDVNDNRPEVTITSLFSPVREDA 360
Query: 361 SPGTVIALFNVHDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNI 420
GTVI LFN HD DSG NG V CSI +NL FTLE + +YYRLLT + LDRE+ SEYNI
Sbjct: 361 PQGTVILLFNAHDRDSGKNGQVVCSIQENLSFTLENSEEDYYRLLTAQILDREKASEYNI 420
Query: 421 TVTATDQGTPPLSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPD 480
TVTATD+GTPPLSTE HI+LQV DINDNPP F ASYS Y+PENN RG SI S+ A DPD
Sbjct: 421 TVTATDRGTPPLSTEIHITLQVTDINDNPPAFSQASYSVYLPENNARGTSIFSVIAYDPD 480
Query: 481 SGDNARITYSLAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDP 540
S +N+R+ YSLAEDT QG+PLS+YVSINS+TG+LYALCSFDYEQFRDLQ+ +TASDSG P
Sbjct: 481 SNENSRVIYSLAEDTIQGSPLSTYVSINSDTGVLYALCSFDYEQFRDLQMQVTASDSGSP 540
Query: 541 PLSSNVSLSLFVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQ 600
PLSSNVSL LFVLDQNDN PEILYP PTDGSTGVELAPRSA+ GYLVTKVVAVDRDSGQ
Sbjct: 541 PLSSNVSLRLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQ 600
Query: 601 NAWLSYSLLKSSEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTL 660
NAWLSY L K+SEPGLF+VGLHTGEVRTARALLDRDALKQ LVV VQDHGQPPLSATVTL
Sbjct: 601 NAWLSYRLFKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTL 660
Query: 661 TVAVADSIPDVLADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWH 720
TVA+ADSIPD+LADLGSL+ AD + S LTLYLVVAVA VSCVFL FV LLAL+LR WH
Sbjct: 661 TVAIADSIPDILADLGSLQIPADLEASDLTLYLVVAVAVVSCVFLTFVITLLALRLRHWH 720
Query: 721 KSRLLHAEGSRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLI 780
S LL A LAGVP SHFVGVDGVRAFLQTYS E SLTADSRKSHLIF QP+YADTLI
Sbjct: 721 SSHLLRATSDGLAGVPTSHFVGVDGVRAFLQTYSQEFSLTADSRKSHLIFPQPNYADTLI 780
Query: 781 SRESCEKSEPLLITQD 796
S++SCEK+EPL ++ D
Sbjct: 781 SQQSCEKNEPLCVSVD 796
>gi|14196455 protocadherin gamma subfamily A, 11 isoform 3 precursor
[Homo sapiens]
Length = 750
Score = 849 bits (2194), Expect = 0.0
Identities = 424/626 (67%), Positives = 502/626 (80%), Gaps = 1/626 (0%)
Query: 1 MAAPPARPDHTRLLQI-CLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPREL 59
MA R D +RLL + C+ LG L RA QI YSV EE E+GS VGNI+KDLGL PREL
Sbjct: 1 MANRLQRGDRSRLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPREL 60
Query: 60 AERGVRIVSRGRTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRV 119
A+RGVRIVSRG+TQLFA+NPRSG+L+TAGRIDREELC+ +C N+E+L+EDT+KI V
Sbjct: 61 AKRGVRIVSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGV 120
Query: 120 EVEIIDVNDNPPSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFS 179
EVEIID+NDN PSF ++ EIKV+E+ PGARF LP A DPDVGVNSLQ YQL+ N YFS
Sbjct: 121 EVEIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFS 180
Query: 180 LDVQSGADGIKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNA 239
L ++ DG K PELVLE +LDRE+EA H L+LTA DGGDP+R G I ++++D ND+
Sbjct: 181 LQLRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHI 240
Query: 240 PVFTQPEYHVSVRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSG 299
P+FTQ Y VSV EN+ GTR+L V ATDPDEG NG+V YSFR + K S++FQL+S +G
Sbjct: 241 PMFTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTG 300
Query: 300 DITILGGLDYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQES 359
++ + G LD+E FY+++++ DG GL + +L+TV+D NDNAPE+T+TS +S+ E+
Sbjct: 301 EVQVRGSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILEN 360
Query: 360 SSPGTVIALFNVHDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYN 419
S PGTVIAL NV D DSG NG V+C IP++LPF LEKTYGNYY+L+T R LDRE V YN
Sbjct: 361 SPPGTVIALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYN 420
Query: 420 ITVTATDQGTPPLSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDP 479
IT+TATDQG+PPLS ETH+ L V D NDNPP FPH+SYSAYIPENNPRGASI S+TA DP
Sbjct: 421 ITLTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDP 480
Query: 480 DSGDNARITYSLAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGD 539
DS NA +TYSL +DT QG PLSSYVSINSNTG+LYAL SFDYEQFRDL+L + A DSGD
Sbjct: 481 DSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGD 540
Query: 540 PPLSSNVSLSLFVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSG 599
PPLSSNVSLSLFVLDQNDN PEILYP PTDGSTGVELAPRSA+ GYLVTKVVAVD+DSG
Sbjct: 541 PPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSG 600
Query: 600 QNAWLSYSLLKSSEPGLFAVGLHTGE 625
QNAWLSY LLK+SEPGLFAVG HTGE
Sbjct: 601 QNAWLSYRLLKASEPGLFAVGEHTGE 626
Score = 159 bits (403), Expect = 8e-39
Identities = 148/531 (27%), Positives = 237/531 (44%), Gaps = 55/531 (10%)
Query: 168 QGYQLNSNG---YFSLDVQSGADGIKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSG 224
+G ++ S G F+++ +SG+ L+ +DREE + V + F + +
Sbjct: 63 RGVRIVSRGKTQLFAVNPRSGS-------LITAGRIDREE--LCETVSSCFLNMELLVED 113
Query: 225 TARIL---IILVDTNDNAPVFTQPEYHVSVRENVPVGTRLLTVKATDPDEGANGDVTYSF 281
T +I + ++D NDNAP F + E + V E+ G R A DPD G N +Y
Sbjct: 114 TLKIYGVEVEIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQL 173
Query: 282 RKVRDKISQLFQLN--SLSGDITILGGLDYEDSGFYDIDVEAHDG--PGLRARSKVLVTV 337
QL + + ++ + G LD E + + + A DG P + + V V
Sbjct: 174 SPNNYFSLQLRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVV 233
Query: 338 LDENDNAPEVTVTSLTSSVQESSSPGTVIALFNVHDSDSGGNGLVTCSIPD-----NLPF 392
LD ND+ P T + SV E+ S GT + + N D D G NG V S + + F
Sbjct: 234 LDVNDHIPMFTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIF 293
Query: 393 TLEKTYGNYYRLLTHRTLDREEVSEYNITVTATDQGTPPLSTETHISLQVMDINDNPPTF 452
L+ G + +LD E+ Y + + D G L T T + + V+D+NDN P
Sbjct: 294 QLDSQTGE---VQVRGSLDFEKYRFYEMEIQGQDGGG--LFTTTTMLITVVDVNDNAPEI 348
Query: 453 PHASYSAYIPENNPRGASILSMTAQDPDSGDNARITYSLAEDTFQGAPLSSYVSINSNTG 512
S I EN+P G I + QD DSG+N +++ + P + G
Sbjct: 349 TITSSINSILENSPPGTVIALLNVQDQDSGENGQVSCFI--------PNHLPFKLEKTYG 400
Query: 513 ILYALCS---FDYEQFRDLQLLMTASDSGDPPLSSNVSLSLFVLDQNDNVPEILYPTFPT 569
Y L + D E + + +TA+D G PPLS+ + L V D NDN P + ++
Sbjct: 401 NYYKLITSRVLDRELVQSYNITLTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSA 460
Query: 570 DGSTGVELAPRSADSGYLVTKVVAVDRDSGQNAWLSYSLLKSSEPGL-----FAVGLHTG 624
P + G + V A+D DS QNA ++YSL + G+ ++ +TG
Sbjct: 461 -------YIPENNPRGASIFSVTALDPDSKQNALVTYSLTDDTVQGVPLSSYVSINSNTG 513
Query: 625 EVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTLTVAVA---DSIPDVL 672
+ ++ L V+ +D G PPLS+ V+L++ V D+ P++L
Sbjct: 514 VLYALQSFDYEQFRDLELRVIARDSGDPPLSSNVSLSLFVLDQNDNAPEIL 564
>gi|11128035 protocadherin gamma subfamily B, 2 isoform 1 precursor
[Homo sapiens]
Length = 931
Score = 669 bits (1725), Expect = 0.0
Identities = 351/725 (48%), Positives = 474/725 (65%), Gaps = 7/725 (0%)
Query: 1 MAAPPARPDHTRLLQICL--LLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRE 58
M A R R LQ+ L LL + QI YS+ EE + SVVGN+AKDLGL+ R+
Sbjct: 1 MKASSGRCGLVRWLQVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRD 60
Query: 59 LAERGVRIVSRGRTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILR 118
L R +R+ + + F +NP SG L+ + RIDRE++C + P CV + + + E+ + I
Sbjct: 61 LPARKLRVSAE--KEYFTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFY 118
Query: 119 VEVEIIDVNDNPPSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYF 178
+ V + D+NDN P F + +K+ E+ PG FPL A D DVG NSLQ Y LN N YF
Sbjct: 119 IAVIVQDINDNTPLFKQTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYF 178
Query: 179 SLDVQSGADGIKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDN 238
L + DG KYPEL+L+ +LDREE ++H LVLTA DGGDP +SGT +I I + D NDN
Sbjct: 179 DLAEKQTPDGRKYPELILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDN 238
Query: 239 APVFTQPEYHVSVRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLS 298
PVF+Q Y V++RE+VP G +L V ATD DEG N ++TYSF V +++ F LN +
Sbjct: 239 PPVFSQDVYRVTLREDVPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKT 298
Query: 299 GDITILGGLDYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQE 358
G+IT LD+E + Y + +EA D L A + V +LD+ND APEV VTS+++ + E
Sbjct: 299 GEITTKDDLDFEIASSYTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPE 358
Query: 359 SSSPGTVIALFNVHDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEY 418
S PGTVIAL D DSG NG V C + N F L+ + NYY+L+T LDREE+ EY
Sbjct: 359 DSPPGTVIALIKTRDRDSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEY 418
Query: 419 NITVTATDQGTPPLSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQD 478
N+T+TATD G PPLS+ ++L + D+NDN P F SY ++ ENNP GASI ++A D
Sbjct: 419 NLTITATDGGKPPLSSSIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASD 478
Query: 479 PDSGDNARITYSLAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSG 538
PD G + +++YS+ + + SYVS+++ +G+++A +FD+EQ R +L + A D G
Sbjct: 479 PDLGPSGQVSYSIVASDLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQG 538
Query: 539 DPPLSSNVSLSLFVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDS 598
P LS+NVSL + V D NDN P +LYP DGS ++ PR+A+ GYLVTKVVAVD DS
Sbjct: 539 SPALSANVSLRVLVGDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADS 598
Query: 599 GQNAWLSYSLLKSSEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATV 658
G NAWLSY +L++SEPGLF++GL TGEVRTARAL DRDA +QRL+V V+D GQPPLSAT
Sbjct: 599 GHNAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATA 658
Query: 659 TLTVAVADSIPDVLADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRR 718
TL + ADS+ +VL DL + +DP + L YLVVA+A +S +F F+ V+LA+ LR
Sbjct: 659 TLHLIFADSLQEVLPDLSDRREPSDP-QAKLQFYLVVALALISVLF--FLAVILAISLRL 715
Query: 719 WHKSR 723
SR
Sbjct: 716 RLSSR 720
>gi|14270493 protocadherin gamma subfamily B, 2 isoform 2 precursor
[Homo sapiens]
Length = 811
Score = 669 bits (1725), Expect = 0.0
Identities = 351/725 (48%), Positives = 474/725 (65%), Gaps = 7/725 (0%)
Query: 1 MAAPPARPDHTRLLQICL--LLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRE 58
M A R R LQ+ L LL + QI YS+ EE + SVVGN+AKDLGL+ R+
Sbjct: 1 MKASSGRCGLVRWLQVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRD 60
Query: 59 LAERGVRIVSRGRTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILR 118
L R +R+ + + F +NP SG L+ + RIDRE++C + P CV + + + E+ + I
Sbjct: 61 LPARKLRVSAE--KEYFTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFY 118
Query: 119 VEVEIIDVNDNPPSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYF 178
+ V + D+NDN P F + +K+ E+ PG FPL A D DVG NSLQ Y LN N YF
Sbjct: 119 IAVIVQDINDNTPLFKQTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYF 178
Query: 179 SLDVQSGADGIKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDN 238
L + DG KYPEL+L+ +LDREE ++H LVLTA DGGDP +SGT +I I + D NDN
Sbjct: 179 DLAEKQTPDGRKYPELILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDN 238
Query: 239 APVFTQPEYHVSVRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLS 298
PVF+Q Y V++RE+VP G +L V ATD DEG N ++TYSF V +++ F LN +
Sbjct: 239 PPVFSQDVYRVTLREDVPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKT 298
Query: 299 GDITILGGLDYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQE 358
G+IT LD+E + Y + +EA D L A + V +LD+ND APEV VTS+++ + E
Sbjct: 299 GEITTKDDLDFEIASSYTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPE 358
Query: 359 SSSPGTVIALFNVHDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEY 418
S PGTVIAL D DSG NG V C + N F L+ + NYY+L+T LDREE+ EY
Sbjct: 359 DSPPGTVIALIKTRDRDSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEY 418
Query: 419 NITVTATDQGTPPLSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQD 478
N+T+TATD G PPLS+ ++L + D+NDN P F SY ++ ENNP GASI ++A D
Sbjct: 419 NLTITATDGGKPPLSSSIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASD 478
Query: 479 PDSGDNARITYSLAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSG 538
PD G + +++YS+ + + SYVS+++ +G+++A +FD+EQ R +L + A D G
Sbjct: 479 PDLGPSGQVSYSIVASDLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQG 538
Query: 539 DPPLSSNVSLSLFVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDS 598
P LS+NVSL + V D NDN P +LYP DGS ++ PR+A+ GYLVTKVVAVD DS
Sbjct: 539 SPALSANVSLRVLVGDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADS 598
Query: 599 GQNAWLSYSLLKSSEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATV 658
G NAWLSY +L++SEPGLF++GL TGEVRTARAL DRDA +QRL+V V+D GQPPLSAT
Sbjct: 599 GHNAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATA 658
Query: 659 TLTVAVADSIPDVLADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRR 718
TL + ADS+ +VL DL + +DP + L YLVVA+A +S +F F+ V+LA+ LR
Sbjct: 659 TLHLIFADSLQEVLPDLSDRREPSDP-QAKLQFYLVVALALISVLF--FLAVILAISLRL 715
Query: 719 WHKSR 723
SR
Sbjct: 716 RLSSR 720
>gi|14270508 protocadherin gamma subfamily B, 7 isoform 2 precursor
[Homo sapiens]
Length = 808
Score = 665 bits (1716), Expect = 0.0
Identities = 341/701 (48%), Positives = 471/701 (67%), Gaps = 3/701 (0%)
Query: 18 LLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELAERGVRIVSRGRTQLFAL 77
LLL + E I YS+ EE +GSVVGN+AKDLGL+ +++ R +R+ + F++
Sbjct: 20 LLLPLFYPTLCEPIRYSIPEELAKGSVVGNLAKDLGLSVLDVSARELRVSAEKLH--FSV 77
Query: 78 NPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVEVEIIDVNDNPPSFGTEQ 137
+ +SG L+ RIDRE++C C LE ++E+ + I V V I DVND+ P F ++
Sbjct: 78 DAQSGDLLVKDRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVNDHAPQFRKDE 137
Query: 138 REIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSLDVQSGADGIKYPELVLE 197
++++E+ + G L A DPD+ +NSL YQL+ N YFSL + DG KYPELVL+
Sbjct: 138 INLEISESVSLGMGTILESAEDPDISMNSLSKYQLSPNEYFSLVEKDNPDGGKYPELVLQ 197
Query: 198 RALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAPVFTQPEYHVSVRENVPV 257
+ LDRE ++ HHLVLTA DGGDP RSGTA+I I+++D NDN PVF+Q Y VS+RE+VP
Sbjct: 198 KTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPPVFSQDVYRVSLREDVPP 257
Query: 258 GTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGDITILGGLDYEDSGFYDI 317
GT +L VKATD DEG N ++TYSF V DK +F L+ +G+I LD+E+ Y I
Sbjct: 258 GTSILRVKATDQDEGINSEITYSFFGVADKAQHVFSLDYTTGNILTQQPLDFEEVERYTI 317
Query: 318 DVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESSSPGTVIALFNVHDSDSG 377
++EA D L R KV+V V+DENDN+PE+ +TSL+ + E S PG V+ALF D DSG
Sbjct: 318 NIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIMEDSPPGVVVALFKTRDQDSG 377
Query: 378 GNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNITVTATDQGTPPLSTETH 437
NG V CS+ +PF + + NYY+L+T LDRE+ EYN+T+ ATD+G PPLS+
Sbjct: 378 ENGEVRCSLSRGVPFKIHSSSNNYYKLVTDEALDREQTPEYNVTIAATDRGKPPLSSSKT 437
Query: 438 ISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPDSGDNARITYSLAEDTFQ 497
I+L + D+NDN P F ++Y ++PENN GASI ++A DPD G N R++YSL +
Sbjct: 438 ITLHITDVNDNAPVFGQSAYLVHVPENNQPGASIAQVSASDPDFGLNGRVSYSLIASDLE 497
Query: 498 GAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDPPLSSNVSLSLFVLDQND 557
LSSYVS+++ +G+++A +FD+EQ R +L + A D G P LS+NVSL + V D+ND
Sbjct: 498 SRTLSSYVSVSAQSGVVFAQRAFDHEQLRTFELTLQARDQGSPALSANVSLRVLVGDRND 557
Query: 558 NVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQNAWLSYSLLKSSEPGLF 617
N P +LYP DGS + PR+A GYLVTKVVAVD DSG NAWLSY ++++SEPGLF
Sbjct: 558 NAPRVLYPALGPDGSALFDTVPRAAQPGYLVTKVVAVDADSGHNAWLSYHVVQASEPGLF 617
Query: 618 AVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTLTVAVADSIPDVLADLGS 677
++GL TGEVR RAL D+D+++QRL+V V+D GQPPLSAT TL + ADS+ +VL D S
Sbjct: 618 SLGLRTGEVRMVRALGDKDSVRQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLPDF-S 676
Query: 678 LKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRR 718
P+ + + YLVVA+A +S +FL V + +AL+LR+
Sbjct: 677 DHPTPSDSQAEMQFYLVVALALISVLFLLAVILAIALRLRQ 717
>gi|11128027 protocadherin gamma subfamily B, 7 isoform 1 precursor
[Homo sapiens]
Length = 929
Score = 665 bits (1716), Expect = 0.0
Identities = 341/701 (48%), Positives = 471/701 (67%), Gaps = 3/701 (0%)
Query: 18 LLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELAERGVRIVSRGRTQLFAL 77
LLL + E I YS+ EE +GSVVGN+AKDLGL+ +++ R +R+ + F++
Sbjct: 20 LLLPLFYPTLCEPIRYSIPEELAKGSVVGNLAKDLGLSVLDVSARELRVSAEKLH--FSV 77
Query: 78 NPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVEVEIIDVNDNPPSFGTEQ 137
+ +SG L+ RIDRE++C C LE ++E+ + I V V I DVND+ P F ++
Sbjct: 78 DAQSGDLLVKDRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVNDHAPQFRKDE 137
Query: 138 REIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSLDVQSGADGIKYPELVLE 197
++++E+ + G L A DPD+ +NSL YQL+ N YFSL + DG KYPELVL+
Sbjct: 138 INLEISESVSLGMGTILESAEDPDISMNSLSKYQLSPNEYFSLVEKDNPDGGKYPELVLQ 197
Query: 198 RALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAPVFTQPEYHVSVRENVPV 257
+ LDRE ++ HHLVLTA DGGDP RSGTA+I I+++D NDN PVF+Q Y VS+RE+VP
Sbjct: 198 KTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPPVFSQDVYRVSLREDVPP 257
Query: 258 GTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGDITILGGLDYEDSGFYDI 317
GT +L VKATD DEG N ++TYSF V DK +F L+ +G+I LD+E+ Y I
Sbjct: 258 GTSILRVKATDQDEGINSEITYSFFGVADKAQHVFSLDYTTGNILTQQPLDFEEVERYTI 317
Query: 318 DVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESSSPGTVIALFNVHDSDSG 377
++EA D L R KV+V V+DENDN+PE+ +TSL+ + E S PG V+ALF D DSG
Sbjct: 318 NIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIMEDSPPGVVVALFKTRDQDSG 377
Query: 378 GNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNITVTATDQGTPPLSTETH 437
NG V CS+ +PF + + NYY+L+T LDRE+ EYN+T+ ATD+G PPLS+
Sbjct: 378 ENGEVRCSLSRGVPFKIHSSSNNYYKLVTDEALDREQTPEYNVTIAATDRGKPPLSSSKT 437
Query: 438 ISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPDSGDNARITYSLAEDTFQ 497
I+L + D+NDN P F ++Y ++PENN GASI ++A DPD G N R++YSL +
Sbjct: 438 ITLHITDVNDNAPVFGQSAYLVHVPENNQPGASIAQVSASDPDFGLNGRVSYSLIASDLE 497
Query: 498 GAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDPPLSSNVSLSLFVLDQND 557
LSSYVS+++ +G+++A +FD+EQ R +L + A D G P LS+NVSL + V D+ND
Sbjct: 498 SRTLSSYVSVSAQSGVVFAQRAFDHEQLRTFELTLQARDQGSPALSANVSLRVLVGDRND 557
Query: 558 NVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQNAWLSYSLLKSSEPGLF 617
N P +LYP DGS + PR+A GYLVTKVVAVD DSG NAWLSY ++++SEPGLF
Sbjct: 558 NAPRVLYPALGPDGSALFDTVPRAAQPGYLVTKVVAVDADSGHNAWLSYHVVQASEPGLF 617
Query: 618 AVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTLTVAVADSIPDVLADLGS 677
++GL TGEVR RAL D+D+++QRL+V V+D GQPPLSAT TL + ADS+ +VL D S
Sbjct: 618 SLGLRTGEVRMVRALGDKDSVRQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLPDF-S 676
Query: 678 LKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRR 718
P+ + + YLVVA+A +S +FL V + +AL+LR+
Sbjct: 677 DHPTPSDSQAEMQFYLVVALALISVLFLLAVILAIALRLRQ 717
>gi|11128029 protocadherin gamma subfamily B, 6 isoform 1 precursor
[Homo sapiens]
Length = 930
Score = 665 bits (1715), Expect = 0.0
Identities = 341/701 (48%), Positives = 468/701 (66%), Gaps = 3/701 (0%)
Query: 18 LLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELAERGVRIVSRGRTQLFAL 77
LLL + +E I YS+ EE +GSVVGN+AKDLGL+ +++ R +R+ + F++
Sbjct: 20 LLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLDVSARKLRVSAEKLH--FSV 77
Query: 78 NPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVEVEIIDVNDNPPSFGTEQ 137
+ SG L+ RIDRE++C C LE ++E+ + I V V I DVND+ P F ++
Sbjct: 78 DAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVNDHAPQFDKKE 137
Query: 138 REIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSLDVQSGADGIKYPELVLE 197
+++ E+ + G R L A DPD+ +NS++ Y++NSN YFSL V+ +DG KYPEL LE
Sbjct: 138 IHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSLMVRVNSDGGKYPELSLE 197
Query: 198 RALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAPVFTQPEYHVSVRENVPV 257
+ LDREE+ H L+LTA DGGDP RS TA I I + DTNDN PVF++ EY +S+ EN+P
Sbjct: 198 KLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPPVFSRDEYRISLSENLPP 257
Query: 258 GTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGDITILGGLDYEDSGFYDI 317
G+ +L V ATD DEG N ++ Y FR +F L+ +G I D+ED Y +
Sbjct: 258 GSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGMIKNNQSFDFEDVERYTM 317
Query: 318 DVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESSSPGTVIALFNVHDSDSG 377
+VEA DG GL + KV++ +LDENDN+PE+ +TSL+ + E+S PG V+ALF D D G
Sbjct: 318 EVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENSPPGMVVALFKTRDLDFG 377
Query: 378 GNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNITVTATDQGTPPLSTETH 437
GNG V C+I ++PF + + NYY+L+T LDRE+ EYN+T+ ATD+G PPLS+
Sbjct: 378 GNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNVTIVATDRGKPPLSSSRS 437
Query: 438 ISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPDSGDNARITYSLAEDTFQ 497
I+L V DINDN P F SY ++ ENNP GASI ++A DPD G N I+YS+ +
Sbjct: 438 ITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPDLGLNGHISYSIVASDLE 497
Query: 498 GAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDPPLSSNVSLSLFVLDQND 557
+SSYVS+++ +G+++A +FD+EQ R L + A D G P LS+NVSL + V D+ND
Sbjct: 498 PLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSPTLSANVSLRVLVGDRND 557
Query: 558 NVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQNAWLSYSLLKSSEPGLF 617
N P +LYP DGS ++ PRSA+ GYLVTKVVAVD DSG NAWLSY +L++SEPGLF
Sbjct: 558 NAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGLF 617
Query: 618 AVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTLTVAVADSIPDVLADLGS 677
++GL TGEVRTARAL DRDA +QRL+V V+D GQPPLSAT TL + AD++ ++L DL
Sbjct: 618 SLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADNLQEILPDLSD 677
Query: 678 LKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRR 718
+DP + L YLVVA+A +S +FL V + +AL+LRR
Sbjct: 678 RPVLSDP-QAELQFYLVVALALISVLFLLAVILAIALRLRR 717
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.134 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,609,623
Number of Sequences: 37866
Number of extensions: 1436250
Number of successful extensions: 9284
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 2474
Number of HSP's gapped (non-prelim): 604
length of query: 820
length of database: 18,247,518
effective HSP length: 111
effective length of query: 709
effective length of database: 14,044,392
effective search space: 9957473928
effective search space used: 9957473928
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.