Search of human proteins with 9910378

Search of human proteins with 9910378

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|9910378 CDC42 small effector 2 [Homo sapiens]
         (84 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|84697026 CDC42 small effector 2 [Homo sapiens]                     178   7e-46
gi|9910378 CDC42 small effector 2 [Homo sapiens]                      178   7e-46
gi|9910544 CDC42 small effector 1 [Homo sapiens]                       82   7e-17
gi|84798620 CDC42 small effector 1 [Homo sapiens]                      82   7e-17
gi|115527097 CDC42-binding protein kinase beta [Homo sapiens]          32   0.11 
gi|30089962 CDC42-binding protein kinase alpha isoform B [Homo s...    31   0.18 
gi|30089960 CDC42-binding protein kinase alpha isoform A [Homo s...    31   0.18 
gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo sap...    29   0.70 
gi|11559925 X-prolyl aminopeptidase (aminopeptidase P) 3, putati...    29   0.92 
gi|156766068 CDC42 binding protein kinase gamma (DMPK-like) [Hom...    28   2.0  
gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens]             27   2.7  
gi|122937241 SH3 and multiple ankyrin repeat domains 3 [Homo sap...    26   7.8  

>gi|84697026 CDC42 small effector 2 [Homo sapiens]
          Length = 84

 Score =  178 bits (452), Expect = 7e-46
 Identities = 84/84 (100%), Positives = 84/84 (100%)

Query: 1  MSEFWLCFNCCIAEQPQPKRRRRIDRSMIGEPTNFVHTAHVGSGDLFSGMNSVSSIQNQM 60
          MSEFWLCFNCCIAEQPQPKRRRRIDRSMIGEPTNFVHTAHVGSGDLFSGMNSVSSIQNQM
Sbjct: 1  MSEFWLCFNCCIAEQPQPKRRRRIDRSMIGEPTNFVHTAHVGSGDLFSGMNSVSSIQNQM 60

Query: 61 QSKGGYGGGMPANVQMQLVDTKAG 84
          QSKGGYGGGMPANVQMQLVDTKAG
Sbjct: 61 QSKGGYGGGMPANVQMQLVDTKAG 84


>gi|9910378 CDC42 small effector 2 [Homo sapiens]
          Length = 84

 Score =  178 bits (452), Expect = 7e-46
 Identities = 84/84 (100%), Positives = 84/84 (100%)

Query: 1  MSEFWLCFNCCIAEQPQPKRRRRIDRSMIGEPTNFVHTAHVGSGDLFSGMNSVSSIQNQM 60
          MSEFWLCFNCCIAEQPQPKRRRRIDRSMIGEPTNFVHTAHVGSGDLFSGMNSVSSIQNQM
Sbjct: 1  MSEFWLCFNCCIAEQPQPKRRRRIDRSMIGEPTNFVHTAHVGSGDLFSGMNSVSSIQNQM 60

Query: 61 QSKGGYGGGMPANVQMQLVDTKAG 84
          QSKGGYGGGMPANVQMQLVDTKAG
Sbjct: 61 QSKGGYGGGMPANVQMQLVDTKAG 84


>gi|9910544 CDC42 small effector 1 [Homo sapiens]
          Length = 79

 Score = 82.4 bits (202), Expect = 7e-17
 Identities = 38/67 (56%), Positives = 50/67 (74%), Gaps = 3/67 (4%)

Query: 1  MSEFWLCFNCCIAEQPQPKR-RRRIDRSMIGEPTNFVHTAHVGSGDLFS--GMNSVSSIQ 57
          MSEFW    CC+ E+PQPK+ RRRIDR+MIGEP NFVH  H+GSG++ +  G+    ++Q
Sbjct: 1  MSEFWHKLGCCVVEKPQPKKKRRRIDRTMIGEPMNFVHLTHIGSGEMGAGDGLAMTGAVQ 60

Query: 58 NQMQSKG 64
           QM+SKG
Sbjct: 61 EQMRSKG 67


>gi|84798620 CDC42 small effector 1 [Homo sapiens]
          Length = 79

 Score = 82.4 bits (202), Expect = 7e-17
 Identities = 38/67 (56%), Positives = 50/67 (74%), Gaps = 3/67 (4%)

Query: 1  MSEFWLCFNCCIAEQPQPKR-RRRIDRSMIGEPTNFVHTAHVGSGDLFS--GMNSVSSIQ 57
          MSEFW    CC+ E+PQPK+ RRRIDR+MIGEP NFVH  H+GSG++ +  G+    ++Q
Sbjct: 1  MSEFWHKLGCCVVEKPQPKKKRRRIDRTMIGEPMNFVHLTHIGSGEMGAGDGLAMTGAVQ 60

Query: 58 NQMQSKG 64
           QM+SKG
Sbjct: 61 EQMRSKG 67


>gi|115527097 CDC42-binding protein kinase beta [Homo sapiens]
          Length = 1711

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 6/40 (15%)

Query: 12   IAEQPQPKRRRRIDRS------MIGEPTNFVHTAHVGSGD 45
            + E+ + ++RR + R       MI  PTNF H AH+G GD
Sbjct: 1560 VPEEERLQQRREMLRDPELRSKMISNPTNFNHVAHMGPGD 1599


>gi|30089962 CDC42-binding protein kinase alpha isoform B [Homo
            sapiens]
          Length = 1719

 Score = 31.2 bits (69), Expect = 0.18
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 6/65 (9%)

Query: 12   IAEQPQPKRRRRIDRS------MIGEPTNFVHTAHVGSGDLFSGMNSVSSIQNQMQSKGG 65
            + E+ + ++RR + R       +I  PTNF H AH+G GD    +  +       +S+  
Sbjct: 1535 VPEEERMQQRREMLRDPEMRNKLISNPTNFNHIAHMGPGDGIQILKDLPMNPRPQESRTV 1594

Query: 66   YGGGM 70
            + G +
Sbjct: 1595 FSGSV 1599


>gi|30089960 CDC42-binding protein kinase alpha isoform A [Homo
            sapiens]
          Length = 1638

 Score = 31.2 bits (69), Expect = 0.18
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 6/65 (9%)

Query: 12   IAEQPQPKRRRRIDRS------MIGEPTNFVHTAHVGSGDLFSGMNSVSSIQNQMQSKGG 65
            + E+ + ++RR + R       +I  PTNF H AH+G GD    +  +       +S+  
Sbjct: 1454 VPEEERMQQRREMLRDPEMRNKLISNPTNFNHIAHMGPGDGIQILKDLPMNPRPQESRTV 1513

Query: 66   YGGGM 70
            + G +
Sbjct: 1514 FSGSV 1518


>gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo
           sapiens]
          Length = 505

 Score = 29.3 bits (64), Expect = 0.70
 Identities = 10/23 (43%), Positives = 17/23 (73%)

Query: 20  RRRRIDRSMIGEPTNFVHTAHVG 42
           +++R+ ++ IG P+NF H  HVG
Sbjct: 194 KKKRLTKADIGTPSNFQHIGHVG 216


>gi|11559925 X-prolyl aminopeptidase (aminopeptidase P) 3,
          putative [Homo sapiens]
          Length = 507

 Score = 28.9 bits (63), Expect = 0.92
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 10/59 (16%)

Query: 17 QPKRRRRIDRSMIGEPTNFVHTAHVGSGDLFSGMNSV----------SSIQNQMQSKGG 65
          QP   RRI    +G+P+ F H   +  G++  G++ V          S IQ + Q + G
Sbjct: 34 QPVPERRIPNRYLGQPSPFTHPHLLRPGEVTPGLSQVEYALRRHKLMSLIQKEAQGQSG 92


>gi|156766068 CDC42 binding protein kinase gamma (DMPK-like) [Homo
            sapiens]
          Length = 1551

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 6/37 (16%)

Query: 12   IAEQPQPKRRRR------IDRSMIGEPTNFVHTAHVG 42
            ++E+ Q ++RR       +   +I  PTNF H  HVG
Sbjct: 1414 VSEEQQKQQRREMLKDPFVRSKLISPPTNFNHLVHVG 1450


>gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens]
          Length = 502

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 3/30 (10%)

Query: 16  PQPKRR---RRIDRSMIGEPTNFVHTAHVG 42
           P  K+R   ++I ++ IG P+ F H +HVG
Sbjct: 222 PADKKRSGKKKISKADIGAPSGFKHVSHVG 251


>gi|122937241 SH3 and multiple ankyrin repeat domains 3 [Homo sapiens]
          Length = 1747

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 41   VGSGDLFSGMNSVSSIQNQMQSKGGYGGGMPANVQ 75
            + +  LFS +  +SSI  Q +S GG GGG   +V+
Sbjct: 1547 IAAARLFSSLGELSSISAQ-RSPGGPGGGASYSVR 1580


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.133    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,438,308
Number of Sequences: 37866
Number of extensions: 135499
Number of successful extensions: 349
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 337
Number of HSP's gapped (non-prelim): 12
length of query: 84
length of database: 18,247,518
effective HSP length: 56
effective length of query: 28
effective length of database: 16,127,022
effective search space: 451556616
effective search space used: 451556616
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.