Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 94557308
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|94557308 L-3-hydroxyacyl-Coenzyme A dehydrogenase precursor
[Homo sapiens]
(314 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|94557308 L-3-hydroxyacyl-Coenzyme A dehydrogenase precursor [... 612 e-175
gi|20127408 mitochondrial trifunctional protein, alpha subunit p... 162 4e-40
gi|68989263 enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A... 131 9e-31
gi|115430219 lambda-crystallin [Homo sapiens] 91 1e-18
gi|221316687 SEC14 (S. cerevisiae)-like 1 isoform c [Homo sapiens] 32 0.96
gi|221316680 SEC14 (S. cerevisiae)-like 1 isoform a [Homo sapiens] 32 0.96
gi|221316676 SEC14 (S. cerevisiae)-like 1 isoform a [Homo sapiens] 32 0.96
gi|26051214 calcium/calmodulin-dependent protein kinase II beta ... 32 0.96
gi|221316684 SEC14 (S. cerevisiae)-like 1 isoform b [Homo sapiens] 32 0.96
gi|221316682 SEC14 (S. cerevisiae)-like 1 isoform a [Homo sapiens] 32 0.96
gi|150010661 SEC14-like 5 [Homo sapiens] 32 0.96
gi|206597549 coiled-coil domain containing 36 [Homo sapiens] 30 2.8
gi|206597547 coiled-coil domain containing 36 [Homo sapiens] 30 2.8
gi|21237808 SWI/SNF-related matrix-associated actin-dependent re... 30 2.8
gi|21237805 SWI/SNF-related matrix-associated actin-dependent re... 30 2.8
gi|194363725 SWI/SNF-related matrix-associated actin-dependent r... 30 2.8
gi|116008447 CAP-GLY domain containing linker protein 2 isoform ... 30 3.6
gi|14702162 CAP-GLY domain containing linker protein 2 isoform 2... 30 3.6
gi|54292123 lysosomal trafficking regulator [Homo sapiens] 29 6.2
gi|40556376 cytokine-like nuclear factor n-pac [Homo sapiens] 29 6.2
gi|11545855 ribokinase [Homo sapiens] 28 8.1
>gi|94557308 L-3-hydroxyacyl-Coenzyme A dehydrogenase precursor
[Homo sapiens]
Length = 314
Score = 612 bits (1577), Expect = e-175
Identities = 314/314 (100%), Positives = 314/314 (100%)
Query: 1 MAFVTRQFMRSVSSSSTASASAKKIIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE 60
MAFVTRQFMRSVSSSSTASASAKKIIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE
Sbjct: 1 MAFVTRQFMRSVSSSSTASASAKKIIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE 60
Query: 61 DILAKSKKGIEESLRKVAKKKFAENLKAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAI 120
DILAKSKKGIEESLRKVAKKKFAENLKAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAI
Sbjct: 61 DILAKSKKGIEESLRKVAKKKFAENLKAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAI 120
Query: 121 VENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKL 180
VENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKL
Sbjct: 121 VENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKL 180
Query: 181 VEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRLLVPYLMEAIRLYERGDAS 240
VEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRLLVPYLMEAIRLYERGDAS
Sbjct: 181 VEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRLLVPYLMEAIRLYERGDAS 240
Query: 241 KEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMDAENPLHQPSPSLNKLVAEN 300
KEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMDAENPLHQPSPSLNKLVAEN
Sbjct: 241 KEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMDAENPLHQPSPSLNKLVAEN 300
Query: 301 KFGKKTGEGFYKYK 314
KFGKKTGEGFYKYK
Sbjct: 301 KFGKKTGEGFYKYK 314
>gi|20127408 mitochondrial trifunctional protein, alpha subunit
precursor [Homo sapiens]
Length = 763
Score = 162 bits (410), Expect = 4e-40
Identities = 98/289 (33%), Positives = 155/289 (53%), Gaps = 10/289 (3%)
Query: 27 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENL 86
VKH+ ++G GLMGAGIAQV+ G +L D T L + ++ + + L KKK +
Sbjct: 361 VKHLAILGAGLMGAGIAQVSVDKGLKTILKDATLTALDRGQQQVFKGLNDKVKKKALTSF 420
Query: 87 KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS 146
+ F S + D D+V+EA+ E+L +K+ + K ++ +H IFAS
Sbjct: 421 ERDSIF-----SNLTGQLDYQGF-EKADMVIEAVFEDLSLKHRVLKEVEAVIPDHCIFAS 474
Query: 147 NTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 206
NTS+L I+ IA + R ++ G+H+F+PV M+L+E+I T TS+ T S V GK
Sbjct: 475 NTSALPISEIAAVSKRPEKVIGMHYFSPVDKMQLLEIITTEKTSKDTSASAVAVGLKQGK 534
Query: 207 HPVSCKDTPGFIVNRLLVPYLMEAIRLYERG-DASKEDIDTAMKLGAGYPMGPFELLDYV 265
+ KD PGF R L P + E IR+ + G D K D ++ G+P+G L+D V
Sbjct: 535 VIIVVKDGPGFYTTRCLAPMMSEVIRILQEGVDPKKLD---SLTTSFGFPVGAATLVDEV 591
Query: 266 GLDTTKFIVDGWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKYK 314
G+D K + + ++ E L ++V++ G+K+G+GFY Y+
Sbjct: 592 GVDVAKHVAEDLGKVFGERFGGGNPELLTQMVSKGFLGRKSGKGFYIYQ 640
>gi|68989263 enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A
dehydrogenase [Homo sapiens]
Length = 723
Score = 131 bits (329), Expect = 9e-31
Identities = 98/312 (31%), Positives = 149/312 (47%), Gaps = 25/312 (8%)
Query: 13 SSSSTASASAKKIIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEE 72
S +S +ASA+ V V V+G G MG GI A V+ VD ++ LA + K I
Sbjct: 285 SGASWKTASARP--VSSVGVVGLGTMGRGIVISFARARIPVIAVDSDKNQLATANKMITS 342
Query: 73 SLRKVAKKKFAENLKAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFK 132
L K A K + T + + DLV+EA+ E + +K ++F
Sbjct: 343 VLEKEASKM--------QQSGHPWSGPKPRLTSSVKELGGVDLVIEAVFEEMSLKKQVFA 394
Query: 133 RLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQK 192
L +NTS+L + IA++T R G HFF+P VMKL+EVI + +S
Sbjct: 395 ELSAVCKPEAFLCTNTSALDVDEIASSTDRPHLVIGTHFFSPAHVMKLLEVIPSQYSSPT 454
Query: 193 TFESLVDFSKALGKHPVSCKDTPGFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGA 252
T ++++ SK + K V + GF+ NR+L PY +A L E G + E++D ++
Sbjct: 455 TIATVMNLSKKIKKIGVVVGNCFGFVGNRMLNPYYNQAYFLLEEG-SKPEEVDQVLE-EF 512
Query: 253 GYPMGPFELLDYVGLD-----------TTKFIVDGWHEMDAENPLHQPSPSLNKLVAENK 301
G+ MGPF + D GLD T ++ G N + P P + L +
Sbjct: 513 GFKMGPFRVSDLAGLDVGWKSRKGQGLTGPTLLPGTPARKRGNRRYCPIPDV--LCELGR 570
Query: 302 FGKKTGEGFYKY 313
FG+KTG+G+Y+Y
Sbjct: 571 FGQKTGKGWYQY 582
Score = 35.4 bits (80), Expect = 0.066
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 218 IVNRLLVPYLMEAIRLYERG-DASKEDIDTAMKLGAGYPM---GPFELLDYVGLDTTKFI 273
I+ R L + EA R+ G AS E ID G G+P GP VGL T
Sbjct: 619 ILERCLYSLINEAFRILGEGIAASPEHIDVVYLHGYGWPRHKGGPMFYASTVGLPTVLEK 678
Query: 274 VDGWHEMDAENPLHQPSPSLNKLVAE 299
+ ++ + + P +PS L KL ++
Sbjct: 679 LQKYYRQNPDIPQLEPSDYLKKLASQ 704
>gi|115430219 lambda-crystallin [Homo sapiens]
Length = 319
Score = 90.9 bits (224), Expect = 1e-18
Identities = 66/237 (27%), Positives = 114/237 (48%), Gaps = 8/237 (3%)
Query: 30 VTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENLKAG 89
V ++G G++G A + A+ G V L D + + + + I + ++ + + A +LK G
Sbjct: 9 VVIVGSGVIGRSWAMLFASGGFQVKLYDIEQQQIRNALENIRKEMKLLEQ---AGSLK-G 64
Query: 90 DEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTS 149
VE+ LS I+ + V + E + E+L++K ++F +LD + I +S+TS
Sbjct: 65 SLSVEEQLSLISGCPNIQEAVEGAMHIQECVPEDLELKKKIFAQLDSIIDDRVILSSSTS 124
Query: 150 SLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPV 209
L + + + H NP + LVE++ P T+ T + K +G+ P+
Sbjct: 125 CLMPSKLFAGLVHVKQCIVAHPVNPPYYIPLVELVPHPETAPTTVDRTHALMKKIGQCPM 184
Query: 210 SC-KDTPGFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYP---MGPFELL 262
K+ GF++NRL + EA RL E G S D+D M G G +GP E +
Sbjct: 185 RVQKEVAGFVLNRLQYAIISEAWRLVEEGIVSPSDLDLVMSEGLGMRYAFIGPLETM 241
>gi|221316687 SEC14 (S. cerevisiae)-like 1 isoform c [Homo sapiens]
Length = 681
Score = 31.6 bits (70), Expect = 0.96
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 57 DQTEDILAKSKKGIEESLRKVAKKKFAENLKAGDEFVE 94
+Q+ + KS G E ++ K+A K++ N+K G E +E
Sbjct: 93 EQSASLDIKSFFGFESTVEKIAMKQYTSNIKKGKEIIE 130
>gi|221316680 SEC14 (S. cerevisiae)-like 1 isoform a [Homo sapiens]
Length = 715
Score = 31.6 bits (70), Expect = 0.96
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 57 DQTEDILAKSKKGIEESLRKVAKKKFAENLKAGDEFVE 94
+Q+ + KS G E ++ K+A K++ N+K G E +E
Sbjct: 127 EQSASLDIKSFFGFESTVEKIAMKQYTSNIKKGKEIIE 164
>gi|221316676 SEC14 (S. cerevisiae)-like 1 isoform a [Homo sapiens]
Length = 715
Score = 31.6 bits (70), Expect = 0.96
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 57 DQTEDILAKSKKGIEESLRKVAKKKFAENLKAGDEFVE 94
+Q+ + KS G E ++ K+A K++ N+K G E +E
Sbjct: 127 EQSASLDIKSFFGFESTVEKIAMKQYTSNIKKGKEIIE 164
>gi|26051214 calcium/calmodulin-dependent protein kinase II beta
isoform 6 [Homo sapiens]
Length = 492
Score = 31.6 bits (70), Expect = 0.96
Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 12/93 (12%)
Query: 47 AATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENLKAGDEFVEKTLSTIATSTDA 106
AA+G T+ LV+Q + +L K G++E V + +K + T+
Sbjct: 329 AASGTTMGLVEQAKSLLNKKADGVKEPQTTVIHNP-VDGIKESSDSANTTIEDEDAKARK 387
Query: 107 ASVVHSTDLVVEAI-----------VENLKVKN 128
++ +T+ ++EA+ ENL KN
Sbjct: 388 QEIIKTTEQLIEAVNNGDFEAYAFYFENLLAKN 420
>gi|221316684 SEC14 (S. cerevisiae)-like 1 isoform b [Homo sapiens]
Length = 719
Score = 31.6 bits (70), Expect = 0.96
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 57 DQTEDILAKSKKGIEESLRKVAKKKFAENLKAGDEFVE 94
+Q+ + KS G E ++ K+A K++ N+K G E +E
Sbjct: 127 EQSASLDIKSFFGFESTVEKIAMKQYTSNIKKGKEIIE 164
>gi|221316682 SEC14 (S. cerevisiae)-like 1 isoform a [Homo sapiens]
Length = 715
Score = 31.6 bits (70), Expect = 0.96
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 57 DQTEDILAKSKKGIEESLRKVAKKKFAENLKAGDEFVE 94
+Q+ + KS G E ++ K+A K++ N+K G E +E
Sbjct: 127 EQSASLDIKSFFGFESTVEKIAMKQYTSNIKKGKEIIE 164
>gi|150010661 SEC14-like 5 [Homo sapiens]
Length = 696
Score = 31.6 bits (70), Expect = 0.96
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 57 DQTEDILAKSKKGIEESLRKVAKKKFAENLKAGDEFVEKTLSTI 100
+Q+ + +S G E +L K+A K++ N+K G E +E L+ +
Sbjct: 127 EQSASLDIRSFFGFENALEKIAMKQYTANVKRGKEVIEHYLNEL 170
>gi|206597549 coiled-coil domain containing 36 [Homo sapiens]
Length = 594
Score = 30.0 bits (66), Expect = 2.8
Identities = 28/147 (19%), Positives = 64/147 (43%), Gaps = 15/147 (10%)
Query: 32 VIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSK------------KGIEESLRKV-- 77
+ GG + G+ + G + L++Q E+ ++K + ES+ ++
Sbjct: 92 LFGGDIKDGGLFPPPLSVGKSKGLLEQFEEKKKRAKDKCDSETLYNFVSNVRESILRLQT 151
Query: 78 AKKKFAENLKAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKF 137
+ +K ++L + + + +L T+A T ++ DLV EA+ + ++ + + +F
Sbjct: 152 SVEKSEDHLSSRSQSILDSLETVA-KTLQETIQAQNDLVFEAVQDKGNMEQAILEMKKRF 210
Query: 138 AAEHTIFASNTSSLQITSIANATTRQD 164
A F S+L+ + A Q+
Sbjct: 211 EARQGEFIEMKSNLKHLEVLVAQQSQE 237
>gi|206597547 coiled-coil domain containing 36 [Homo sapiens]
Length = 594
Score = 30.0 bits (66), Expect = 2.8
Identities = 28/147 (19%), Positives = 64/147 (43%), Gaps = 15/147 (10%)
Query: 32 VIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSK------------KGIEESLRKV-- 77
+ GG + G+ + G + L++Q E+ ++K + ES+ ++
Sbjct: 92 LFGGDIKDGGLFPPPLSVGKSKGLLEQFEEKKKRAKDKCDSETLYNFVSNVRESILRLQT 151
Query: 78 AKKKFAENLKAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKF 137
+ +K ++L + + + +L T+A T ++ DLV EA+ + ++ + + +F
Sbjct: 152 SVEKSEDHLSSRSQSILDSLETVA-KTLQETIQAQNDLVFEAVQDKGNMEQAILEMKKRF 210
Query: 138 AAEHTIFASNTSSLQITSIANATTRQD 164
A F S+L+ + A Q+
Sbjct: 211 EARQGEFIEMKSNLKHLEVLVAQQSQE 237
>gi|21237808 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin c2 isoform b [Homo sapiens]
Length = 1130
Score = 30.0 bits (66), Expect = 2.8
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 67 KKGIEESLRKVAKKKFAENLKAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKV 126
K+G EE L++V + + K + E LST A + AA+ V + L A VE K+
Sbjct: 859 KEGQEEVLKEVVESEGERKTKVERDIGEGNLSTAAAAALAAAAVKAKHL---AAVEERKI 915
Query: 127 KN 128
K+
Sbjct: 916 KS 917
>gi|21237805 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin c2 isoform a [Homo sapiens]
Length = 1214
Score = 30.0 bits (66), Expect = 2.8
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 67 KKGIEESLRKVAKKKFAENLKAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKV 126
K+G EE L++V + + K + E LST A + AA+ V + L A VE K+
Sbjct: 828 KEGQEEVLKEVVESEGERKTKVERDIGEGNLSTAAAAALAAAAVKAKHL---AAVEERKI 884
Query: 127 KN 128
K+
Sbjct: 885 KS 886
>gi|194363725 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin c2 isoform c [Homo sapiens]
Length = 1152
Score = 30.0 bits (66), Expect = 2.8
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 67 KKGIEESLRKVAKKKFAENLKAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKV 126
K+G EE L++V + + K + E LST A + AA+ V + L A VE K+
Sbjct: 859 KEGQEEVLKEVVESEGERKTKVERDIGEGNLSTAAAAALAAAAVKAKHL---AAVEERKI 915
Query: 127 KN 128
K+
Sbjct: 916 KS 917
>gi|116008447 CAP-GLY domain containing linker protein 2 isoform 1
[Homo sapiens]
Length = 1046
Score = 29.6 bits (65), Expect = 3.6
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 60 EDILAKSKKGIEESLRKVAKKKFAENLKAGDEFVEKTLSTIATSTDAASVVHSTDLVVEA 119
E +L+ SK+ ES V + K+ + LKA V+K + A A V D V +A
Sbjct: 547 ERLLSASKEHQRES--GVLRDKYEKALKAYQAEVDKLRA--ANEKYAQEVAGLKDKVQQA 602
Query: 120 IVENLKVKNELFKRLDKFAAEH 141
EN+ + + +LD A++H
Sbjct: 603 TSENMGLMDNWKSKLDSLASDH 624
>gi|14702162 CAP-GLY domain containing linker protein 2 isoform 2
[Homo sapiens]
Length = 1011
Score = 29.6 bits (65), Expect = 3.6
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 60 EDILAKSKKGIEESLRKVAKKKFAENLKAGDEFVEKTLSTIATSTDAASVVHSTDLVVEA 119
E +L+ SK+ ES V + K+ + LKA V+K + A A V D V +A
Sbjct: 512 ERLLSASKEHQRES--GVLRDKYEKALKAYQAEVDKLRA--ANEKYAQEVAGLKDKVQQA 567
Query: 120 IVENLKVKNELFKRLDKFAAEH 141
EN+ + + +LD A++H
Sbjct: 568 TSENMGLMDNWKSKLDSLASDH 589
>gi|54292123 lysosomal trafficking regulator [Homo sapiens]
Length = 3801
Score = 28.9 bits (63), Expect = 6.2
Identities = 43/180 (23%), Positives = 72/180 (40%), Gaps = 21/180 (11%)
Query: 58 QTEDILAKSKKGIEESLRKVAKKKFAENLKAGDEFVEKTLSTIATSTDAASVVHS-TDLV 116
QTE +L K + + L + +++ ++ + AT T+ A + T L
Sbjct: 2602 QTESLLMKMRSVANDELHVMMQRRMSQENPSQ-----------ATETELAQRLQRLTVLA 2650
Query: 117 VEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNPVP 176
V I+ + +++ +D + S TS Q T I+ ++ + + F
Sbjct: 2651 VNRIIYQ-EFNSDI---IDILRTPENVTQSKTSVFQ-TEISEENIHHEQSSVFNPFQKEI 2705
Query: 177 VMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRLLVPYLMEAIRLYER 236
LVE K + S K S ++K L SCK+T + RLLV L A ER
Sbjct: 2706 FTYLVEGFKVSIGSSKASGSKQQWTKILW----SCKETFRMQLGRLLVHILSPAHAAQER 2761
>gi|40556376 cytokine-like nuclear factor n-pac [Homo sapiens]
Length = 553
Score = 28.9 bits (63), Expect = 6.2
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 13 SSSSTASASAKKIIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTED 61
++ STA + K + +G GLMG+GI GHTV + ++T +
Sbjct: 253 AADSTAVNGSITPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAE 301
>gi|11545855 ribokinase [Homo sapiens]
Length = 322
Score = 28.5 bits (62), Expect = 8.1
Identities = 28/110 (25%), Positives = 40/110 (36%), Gaps = 8/110 (7%)
Query: 76 KVAKKKFA----ENLKAGDEFVEKTLSTIATSTDAASVV---HSTDLVVEAIVENLKVKN 128
KV K F ENLK D E T T +T AS++ +++V NL +
Sbjct: 74 KVGKDSFGNDYIENLKQNDISTEFTYQTKDAATGTASIIVNNEGQNIIVIVAGANLLLNT 133
Query: 129 ELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVM 178
E + + + TS+ A T R FNP P +
Sbjct: 134 EDLRAAANVISRAKVMVCQLEITPATSL-EALTMARRSGVKTLFNPAPAI 182
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.131 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,893,270
Number of Sequences: 37866
Number of extensions: 404588
Number of successful extensions: 1061
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1042
Number of HSP's gapped (non-prelim): 26
length of query: 314
length of database: 18,247,518
effective HSP length: 102
effective length of query: 212
effective length of database: 14,385,186
effective search space: 3049659432
effective search space used: 3049659432
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.