Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: RBKS Sequence: fasta or formatted (322aa) NCBI GI: 11545855
Description:

ribokinase

Referenced in:

Hexokinases and Initial Sugar Metabolism
Pentose Phosphate Pathway

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.1         39           3
 C cysteine            2.5          8           2
 D aspartate           4.3         14           1
 E glutamate           5.9         19           2
 F phenylalanine       3.7         12           2
 G glycine             7.8         25           2
 H histidine           0.9          3           1
 I isoleucine          5.3         17           2
 K lysine              4.7         15           2
 L leucine             9.3         30           3
 M methionine          2.2          7           1
 N asparagine          4.7         15           2
 P proline             3.7         12           1
 Q glutamine           4.3         14           1
 R arginine            2.8          9           2
 S serine              6.5         21           2
 T threonine           7.8         25           2
 V valine              8.7         28           4
 W tryptophan          0.3          1           1
 Y tyrosine            2.5          8           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ribokinase 
ADK                   0.048   adenosine kinase isoform b 
ADK                   0.048   adenosine kinase isoform a 
KHK                   0.028   ketohexokinase isoform a 
KHK                   0.025   ketohexokinase isoform b 
PDXK                  0.015   pyridoxal kinase 
DNAH3                 0.013   dynein, axonemal, heavy chain 3 
PLS3                  0.010   plastin 3 
PLS3                  0.010   plastin 3 
GOLGA5                0.008   Golgi autoantigen, golgin subfamily a, 5 
FLJ43860              0.008   hypothetical protein LOC389690 
PLS1                  0.007   plastin 1 
PLS1                  0.007   plastin 1 
HADH                  0.005   L-3-hydroxyacyl-Coenzyme A dehydrogenase precursor [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press