Search of human proteins with 90403581

Search of human proteins with 90403581

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|90403581 meiosis defective 1 [Homo sapiens]
         (1274 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|90403581 meiosis defective 1 [Homo sapiens]                       2477   0.0  
gi|119393876 NLR family, apoptosis inhibitory protein isoform 2 ...    35   0.46 
gi|119393878 NLR family, apoptosis inhibitory protein isoform 1 ...    35   0.46 
gi|190194355 p90 autoantigen [Homo sapiens]                            35   0.60 
gi|239740946 PREDICTED: hypothetical protein XP_002344104 isofor...    32   5.1  
gi|239740944 PREDICTED: hypothetical protein XP_002344105 isofor...    32   5.1  
gi|239740942 PREDICTED: hypothetical protein XP_002344106 isofor...    32   5.1  
gi|4759182 syntaxin 1A (brain) [Homo sapiens]                          32   5.1  
gi|112421122 DnaJ (Hsp40) homolog, subfamily C, member 13 [Homo ...    32   5.1  
gi|32698714 hypothetical protein LOC284058 [Homo sapiens]              31   6.6  
gi|41281398 soc-2 suppressor of clear homolog [Homo sapiens]           31   6.6  
gi|170016061 spectrin, beta, non-erythrocytic 5 [Homo sapiens]         31   6.6  
gi|5901944 elastin microfibril interfacer 1 [Homo sapiens]             31   8.6  

>gi|90403581 meiosis defective 1 [Homo sapiens]
          Length = 1274

 Score = 2477 bits (6420), Expect = 0.0
 Identities = 1274/1274 (100%), Positives = 1274/1274 (100%)

Query: 1    MAVRQAATAGTPGPRREEEAALLFERAHYRHDPRWLLPVTPRLCLACALELLPDPGVSLV 60
            MAVRQAATAGTPGPRREEEAALLFERAHYRHDPRWLLPVTPRLCLACALELLPDPGVSLV
Sbjct: 1    MAVRQAATAGTPGPRREEEAALLFERAHYRHDPRWLLPVTPRLCLACALELLPDPGVSLV 60

Query: 61   RKKHMLSCFQDALVRHTSLVTQLVSQDQRVCIHFISVLFGLLCSMEDGSVTDLCIEVLIQ 120
            RKKHMLSCFQDALVRHTSLVTQLVSQDQRVCIHFISVLFGLLCSMEDGSVTDLCIEVLIQ
Sbjct: 61   RKKHMLSCFQDALVRHTSLVTQLVSQDQRVCIHFISVLFGLLCSMEDGSVTDLCIEVLIQ 120

Query: 121  ITTQLKLEQTIRCLLDECHKELCNMPSMRGSLATLTLLGKLVDAIPALADELVMEHGNLM 180
            ITTQLKLEQTIRCLLDECHKELCNMPSMRGSLATLTLLGKLVDAIPALADELVMEHGNLM
Sbjct: 121  ITTQLKLEQTIRCLLDECHKELCNMPSMRGSLATLTLLGKLVDAIPALADELVMEHGNLM 180

Query: 181  EHLLRGLVYPSEGIQASVCYLYGKLYSSPVAAEMLSGHFREKLFPLFLSILDGAQTKELQ 240
            EHLLRGLVYPSEGIQASVCYLYGKLYSSPVAAEMLSGHFREKLFPLFLSILDGAQTKELQ
Sbjct: 181  EHLLRGLVYPSEGIQASVCYLYGKLYSSPVAAEMLSGHFREKLFPLFLSILDGAQTKELQ 240

Query: 241  INCLGLLRQLLKYDLFVSMIMNQDGLGESAKNIEGSSGNTSLPLVLKKLLLSRDETLQVA 300
            INCLGLLRQLLKYDLFVSMIMNQDGLGESAKNIEGSSGNTSLPLVLKKLLLSRDETLQVA
Sbjct: 241  INCLGLLRQLLKYDLFVSMIMNQDGLGESAKNIEGSSGNTSLPLVLKKLLLSRDETLQVA 300

Query: 301  SAHCITAVLVHSPAKHASAFIHADIPEFLFEHLSSSSEVLVWSSCNCLTLLVEEPLFFSK 360
            SAHCITAVLVHSPAKHASAFIHADIPEFLFEHLSSSSEVLVWSSCNCLTLLVEEPLFFSK
Sbjct: 301  SAHCITAVLVHSPAKHASAFIHADIPEFLFEHLSSSSEVLVWSSCNCLTLLVEEPLFFSK 360

Query: 361  CHTVYGIEAVVRSLQGSLKMNNIELHKQGLLLFAEILTRQPEEIKLFTSSAMCRDAGRAL 420
            CHTVYGIEAVVRSLQGSLKMNNIELHKQGLLLFAEILTRQPEEIKLFTSSAMCRDAGRAL
Sbjct: 361  CHTVYGIEAVVRSLQGSLKMNNIELHKQGLLLFAEILTRQPEEIKLFTSSAMCRDAGRAL 420

Query: 421  QEAVSSPVLEVAAEALKATSAFLRKDHQSTPPVQYGELQALLEAMLNRCAEFSQTLLSRR 480
            QEAVSSPVLEVAAEALKATSAFLRKDHQSTPPVQYGELQALLEAMLNRCAEFSQTLLSRR
Sbjct: 421  QEAVSSPVLEVAAEALKATSAFLRKDHQSTPPVQYGELQALLEAMLNRCAEFSQTLLSRR 480

Query: 481  PLGHASSRDSEKAILQRGKFLLSTLEGFRSACRLAIEFQSEPSAQENPFTAPSAKKEDTL 540
            PLGHASSRDSEKAILQRGKFLLSTLEGFRSACRLAIEFQSEPSAQENPFTAPSAKKEDTL
Sbjct: 481  PLGHASSRDSEKAILQRGKFLLSTLEGFRSACRLAIEFQSEPSAQENPFTAPSAKKEDTL 540

Query: 541  EAFSEFLLSACDSLCIPMVMRHLEQTTHPALMEVFLSILHNLFVIVPHMKEKFSKKLASS 600
            EAFSEFLLSACDSLCIPMVMRHLEQTTHPALMEVFLSILHNLFVIVPHMKEKFSKKLASS
Sbjct: 541  EAFSEFLLSACDSLCIPMVMRHLEQTTHPALMEVFLSILHNLFVIVPHMKEKFSKKLASS 600

Query: 601  SFIRLTLELKARFCSGLSHSALNQVCSNFLYYMCLNLLSAPEKTGPPSKEELSAVSELLQ 660
            SFIRLTLELKARFCSGLSHSALNQVCSNFLYYMCLNLLSAPEKTGPPSKEELSAVSELLQ
Sbjct: 601  SFIRLTLELKARFCSGLSHSALNQVCSNFLYYMCLNLLSAPEKTGPPSKEELSAVSELLQ 660

Query: 661  HGLPQISSRSPESLAFLSDRQYMEGAARQRQYCILLLFYLAYIHEDRFVSEAELFEAVQS 720
            HGLPQISSRSPESLAFLSDRQYMEGAARQRQYCILLLFYLAYIHEDRFVSEAELFEAVQS
Sbjct: 661  HGLPQISSRSPESLAFLSDRQYMEGAARQRQYCILLLFYLAYIHEDRFVSEAELFEAVQS 720

Query: 721  FLLSLQDQGERPPLVVFKASIYLLAICQDKDNTLRETMVSAIRKFLEGIPDLQLVYTHHP 780
            FLLSLQDQGERPPLVVFKASIYLLAICQDKDNTLRETMVSAIRKFLEGIPDLQLVYTHHP
Sbjct: 721  FLLSLQDQGERPPLVVFKASIYLLAICQDKDNTLRETMVSAIRKFLEGIPDLQLVYTHHP 780

Query: 781  LLLRFFLLYPELMSRYGHRVLELWFFWEESSYEELDDVTSAGQPALPASLVVLFQLLRSI 840
            LLLRFFLLYPELMSRYGHRVLELWFFWEESSYEELDDVTSAGQPALPASLVVLFQLLRSI
Sbjct: 781  LLLRFFLLYPELMSRYGHRVLELWFFWEESSYEELDDVTSAGQPALPASLVVLFQLLRSI 840

Query: 841  PSILLILLDLIYSSPVDTAHKVLISLRTFLRRNEDIQVGGLIRGHFLLILQRLLVEHGAS 900
            PSILLILLDLIYSSPVDTAHKVLISLRTFLRRNEDIQVGGLIRGHFLLILQRLLVEHGAS
Sbjct: 841  PSILLILLDLIYSSPVDTAHKVLISLRTFLRRNEDIQVGGLIRGHFLLILQRLLVEHGAS 900

Query: 901  PSGASGNLPLLLSLLSLMQLRNVSEQELDSVAMKLLHQVSKLCGKCSPTDVDILQPSFNF 960
            PSGASGNLPLLLSLLSLMQLRNVSEQELDSVAMKLLHQVSKLCGKCSPTDVDILQPSFNF
Sbjct: 901  PSGASGNLPLLLSLLSLMQLRNVSEQELDSVAMKLLHQVSKLCGKCSPTDVDILQPSFNF 960

Query: 961  LYWSLHQTTPSSQKRAAAVLLSSTGLMELLEKMLALTLAKADSPRTALLCSAWLLTASFS 1020
            LYWSLHQTTPSSQKRAAAVLLSSTGLMELLEKMLALTLAKADSPRTALLCSAWLLTASFS
Sbjct: 961  LYWSLHQTTPSSQKRAAAVLLSSTGLMELLEKMLALTLAKADSPRTALLCSAWLLTASFS 1020

Query: 1021 AQQHKGSLQVHQTLSVEMDQVLKALSFPKKKAALLSAAILCFLRTALRQSFSSALVALVP 1080
            AQQHKGSLQVHQTLSVEMDQVLKALSFPKKKAALLSAAILCFLRTALRQSFSSALVALVP
Sbjct: 1021 AQQHKGSLQVHQTLSVEMDQVLKALSFPKKKAALLSAAILCFLRTALRQSFSSALVALVP 1080

Query: 1081 SGAQPLPATKDTVLAPLRMSQVRSLVIGLQNLLVQKDPLLSQACVGCLEALLDYLDARSP 1140
            SGAQPLPATKDTVLAPLRMSQVRSLVIGLQNLLVQKDPLLSQACVGCLEALLDYLDARSP
Sbjct: 1081 SGAQPLPATKDTVLAPLRMSQVRSLVIGLQNLLVQKDPLLSQACVGCLEALLDYLDARSP 1140

Query: 1141 DIALHVASQPWNRFLLFTLLDAGENSFLRPEILRLMTLFMRYRSSSVLSHEEVGDVLQGV 1200
            DIALHVASQPWNRFLLFTLLDAGENSFLRPEILRLMTLFMRYRSSSVLSHEEVGDVLQGV
Sbjct: 1141 DIALHVASQPWNRFLLFTLLDAGENSFLRPEILRLMTLFMRYRSSSVLSHEEVGDVLQGV 1200

Query: 1201 ALADLSTLSNTTLQALHGFFQQLQSMGHLADHSMAQTLQASLEGLPPSTSSGQPPLQDML 1260
            ALADLSTLSNTTLQALHGFFQQLQSMGHLADHSMAQTLQASLEGLPPSTSSGQPPLQDML
Sbjct: 1201 ALADLSTLSNTTLQALHGFFQQLQSMGHLADHSMAQTLQASLEGLPPSTSSGQPPLQDML 1260

Query: 1261 CLGGVAVSLSHIRN 1274
            CLGGVAVSLSHIRN
Sbjct: 1261 CLGGVAVSLSHIRN 1274


>gi|119393876 NLR family, apoptosis inhibitory protein isoform 2
           [Homo sapiens]
          Length = 1241

 Score = 35.0 bits (79), Expect = 0.46
 Identities = 19/58 (32%), Positives = 36/58 (62%), Gaps = 9/58 (15%)

Query: 98  LFGLLCSM---EDGSVTDLCIEVLIQITTQLKLEQTIRCLLDECHKELCNMPSMRGSL 152
           L  ++C     ++GSVT++C+  +IQ     +L+  +  LLD+ +KE+C++P + G L
Sbjct: 353 LASIICDQLLEKEGSVTEMCVRNIIQ-----QLKNQVLFLLDD-YKEICSIPQVIGKL 404


>gi|119393878 NLR family, apoptosis inhibitory protein isoform 1
           [Homo sapiens]
          Length = 1403

 Score = 35.0 bits (79), Expect = 0.46
 Identities = 19/58 (32%), Positives = 36/58 (62%), Gaps = 9/58 (15%)

Query: 98  LFGLLCSM---EDGSVTDLCIEVLIQITTQLKLEQTIRCLLDECHKELCNMPSMRGSL 152
           L  ++C     ++GSVT++C+  +IQ     +L+  +  LLD+ +KE+C++P + G L
Sbjct: 515 LASIICDQLLEKEGSVTEMCVRNIIQ-----QLKNQVLFLLDD-YKEICSIPQVIGKL 566


>gi|190194355 p90 autoantigen [Homo sapiens]
          Length = 905

 Score = 34.7 bits (78), Expect = 0.60
 Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 27/127 (21%)

Query: 44  CLACALELLPDPGVSLVRKKHMLSCFQDALVRHTSLVTQL-VSQDQRVCI----HFISVL 98
           CL+C +ELL DP +S              ++    L++QL V  + R C+    +  SVL
Sbjct: 55  CLSCLVELLEDPNIS-----------ASLILSIIGLLSQLAVDIETRDCLQNTYNLNSVL 103

Query: 99  FGLLC-SMEDGSVTDLCIEVLIQITTQLK-------LEQTIRCLLD--ECHKELCNMPSM 148
            G++C S    SV   CI++L ++T  +K       +++ I  L+D  +  ++   MP +
Sbjct: 104 AGVVCRSSHTDSVFLQCIQLLQKLTYNVKIFYSGANIDELITFLIDHIQSSEDELKMPCL 163

Query: 149 RGSLATL 155
            G LA L
Sbjct: 164 -GLLANL 169


>gi|239740946 PREDICTED: hypothetical protein XP_002344104 isoform 1
           [Homo sapiens]
          Length = 430

 Score = 31.6 bits (70), Expect = 5.1
 Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 9/66 (13%)

Query: 766 LEGIPDLQLVYTHHPLLLRFFLLYPELMSRYGHRVLELWFFWEESSYEELDDVTSAGQPA 825
           L+G+   Q V   HPLL + + L  EL+ R    VLE        S E L  + ++GQ A
Sbjct: 98  LQGVFSTQTVLKSHPLLSQSYELRAELLGR--QPVLEF-------SLENLRTMNTSGQTA 148

Query: 826 LPASLV 831
           LP + V
Sbjct: 149 LPQAPV 154


>gi|239740944 PREDICTED: hypothetical protein XP_002344105 isoform 2
           [Homo sapiens]
          Length = 430

 Score = 31.6 bits (70), Expect = 5.1
 Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 9/66 (13%)

Query: 766 LEGIPDLQLVYTHHPLLLRFFLLYPELMSRYGHRVLELWFFWEESSYEELDDVTSAGQPA 825
           L+G+   Q V   HPLL + + L  EL+ R    VLE        S E L  + ++GQ A
Sbjct: 98  LQGVFSTQTVLKSHPLLSQSYELRAELLGR--QPVLEF-------SLENLRTMNTSGQTA 148

Query: 826 LPASLV 831
           LP + V
Sbjct: 149 LPQAPV 154


>gi|239740942 PREDICTED: hypothetical protein XP_002344106 isoform 3
           [Homo sapiens]
          Length = 430

 Score = 31.6 bits (70), Expect = 5.1
 Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 9/66 (13%)

Query: 766 LEGIPDLQLVYTHHPLLLRFFLLYPELMSRYGHRVLELWFFWEESSYEELDDVTSAGQPA 825
           L+G+   Q V   HPLL + + L  EL+ R    VLE        S E L  + ++GQ A
Sbjct: 98  LQGVFSTQTVLKSHPLLSQSYELRAELLGR--QPVLEF-------SLENLRTMNTSGQTA 148

Query: 826 LPASLV 831
           LP + V
Sbjct: 149 LPQAPV 154


>gi|4759182 syntaxin 1A (brain) [Homo sapiens]
          Length = 288

 Score = 31.6 bits (70), Expect = 5.1
 Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 26/118 (22%)

Query: 771 DLQLVYTHHPLLLRFFLLYPELMSRY------------GHRVLELWFFWEESSYEELDDV 818
           DL++  T H  L R F+   E+MS Y            G    +L      ++ EEL+D+
Sbjct: 112 DLRIRKTQHSTLSRKFV---EVMSEYNATQSDYRERCKGRIQRQLEITGRTTTSEELEDM 168

Query: 819 TSAGQPALPASLVVLFQLLRSIPSILLILLDLIYSSPVDTAHKVLISLRTFLRRNEDI 876
             +G PA+ AS +++     SI    L        S ++T H  +I L   +R   D+
Sbjct: 169 LESGNPAIFASGIIMDS---SISKQAL--------SEIETRHSEIIKLENSIRELHDM 215


>gi|112421122 DnaJ (Hsp40) homolog, subfamily C, member 13 [Homo
            sapiens]
          Length = 2243

 Score = 31.6 bits (70), Expect = 5.1
 Identities = 62/264 (23%), Positives = 104/264 (39%), Gaps = 37/264 (14%)

Query: 345  CNCLTLLVEEPLFFSKCHTVYGIEAVVRSLQGSLKMNNIELHKQGLLLFAEILTRQPEEI 404
            C CL  L    + + +CH   G     R + G L+    +L +  L+LF   L    + +
Sbjct: 871  CLCLQALA---IVYGRCHEEIGPFTDTRYIIGMLERCTDKLERDRLILFLNKLILNKKNV 927

Query: 405  KLFTSSAMCRDAGRALQEA----------VSSPVLEVAAEALKATSA---FLRKDHQSTP 451
            K    S   R     L  A          + S V+E A +  + +     F   D + + 
Sbjct: 928  KDLMDSNGIRILVDLLTLAHLHVSRATVPLQSNVIEAAPDMKRESEKEWYFGNADKERSG 987

Query: 452  PVQYGELQAL-LEAMLN---RCAEFSQTLLSRRPLGHASSRDSEKAILQRGKFLLSTLEG 507
            P  + E+Q L  + MLN   RC  ++Q +   RPL   S    +  +L  G+ +L+  + 
Sbjct: 988  PYGFHEMQELWTKGMLNAKTRC--WAQGMDGWRPL--QSIPQLKWCLLASGQAVLNETDL 1043

Query: 508  FRSACRLAIEFQSE-PSA-QENPFTAPSAKKEDTLEAFSEFLLSACDSLCIPMVMRHLEQ 565
                  + I      PS  Q+N    P  K +  L           DS C+P +++ L  
Sbjct: 1044 ATLILNMLITMCGYFPSRDQDNAIIRPLPKVKRLLS----------DSTCLPHIIQ-LLL 1092

Query: 566  TTHPALMEVFLSILHNLFVIVPHM 589
            T  P L+E    +L+++    P +
Sbjct: 1093 TFDPILVEKVAILLYHIMQDNPQL 1116


>gi|32698714 hypothetical protein LOC284058 [Homo sapiens]
          Length = 1105

 Score = 31.2 bits (69), Expect = 6.6
 Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 9/66 (13%)

Query: 766 LEGIPDLQLVYTHHPLLLRFFLLYPELMSRYGHRVLELWFFWEESSYEELDDVTSAGQPA 825
           L+G+   Q V   HPLL + + L  EL+ R    VLE        S E L  + ++GQ A
Sbjct: 98  LQGVFSKQTVLKSHPLLSQSYELRAELLGR--QPVLEF-------SLENLRTMNTSGQTA 148

Query: 826 LPASLV 831
           LP + V
Sbjct: 149 LPQAPV 154


>gi|41281398 soc-2 suppressor of clear homolog [Homo sapiens]
          Length = 582

 Score = 31.2 bits (69), Expect = 6.6
 Identities = 49/179 (27%), Positives = 76/179 (42%), Gaps = 25/179 (13%)

Query: 135 LDECHKELCNMPSMRGSLATLTLLG---KLVDAIP------ALADELVMEHGN---LMEH 182
           LD  H EL ++P   G+L++L+ LG     + AIP      +  +EL +E+ N   L E 
Sbjct: 266 LDLQHNELLDLPDTIGNLSSLSRLGLRYNRLSAIPRSLAKCSALEELNLENNNISTLPES 325

Query: 183 LLRGLVYPSEGIQASVCY-LY----GKLYSSPVAAEMLSGHFREKLFPLF--LSILDGAQ 235
           LL  LV  +    A  C+ LY       +S+  +  M      +  F +F    +L    
Sbjct: 326 LLSSLVKLNSLTLARNCFQLYPVGGPSQFSTIYSLNMEHNRINKIPFGIFSRAKVLSKLN 385

Query: 236 TKELQINCLGLLRQLLKYDLFVSMIMNQDGLGESAKNIEGSSGNTSLP-LVLKKLLLSR 293
            K+ Q+  L      L +  + SM+       +  K  E  SG  SL  L+L   LL +
Sbjct: 386 MKDNQLTSLP-----LDFGTWTSMVELNLATNQLTKIPEDVSGLVSLEVLILSNNLLKK 439


>gi|170016061 spectrin, beta, non-erythrocytic 5 [Homo sapiens]
          Length = 3639

 Score = 31.2 bits (69), Expect = 6.6
 Identities = 58/262 (22%), Positives = 90/262 (34%), Gaps = 52/262 (19%)

Query: 299  VASAHCITAVLVHSPAKHASAFIHADIPEFLFEHLSSSSEVLVWSSCNCLT-------LL 351
            + SA  + A +  SPA  +      +    L EH    +E+  W+    L        L 
Sbjct: 2448 LVSAQRLRAQMDTSPAPRSPV----EARRMLEEHQECKAELDSWTDSISLARSTGQQLLT 2503

Query: 352  VEEPLFFSKCHTVYGIEAVVRSLQGSLKMNNIELHKQGLLLFAEILTRQPEEIKLFTSSA 411
               P        + G+E  + SL+G+ + + ++L             +Q  E++LF SS 
Sbjct: 2504 AGHPFSSDIRQVLAGLEQELSSLEGAWQEHQLQL-------------QQALELQLFLSSV 2550

Query: 412  ------MCRDAGRALQEAVSSPV----------------LEVAAEALKATSAFLRKDHQS 449
                  +C        E +  P+                LEV A  + A  A  R  HQ 
Sbjct: 2551 EKMERWLCSKEDSLASEGLWDPLAPMEPLLWKHKMLEWDLEVQAGKISALEATARGLHQG 2610

Query: 450  TPP---VQYGELQALL---EAMLNRCAEFSQTLLSRRPLGHASSRDSEKAILQRGKFLLS 503
              P      G  QA+L   EA+  +       L   R L        E A   R K L++
Sbjct: 2611 GHPEAQSALGRCQAMLLRKEALFRQAGTRRHRLEELRQLQAFLQDSQEVAAWLREKNLVA 2670

Query: 504  TLEGFRSACRLAIEFQSEPSAQ 525
              EG      L  + Q + + Q
Sbjct: 2671 LEEGLLDTAMLPAQLQKQQNFQ 2692


>gi|5901944 elastin microfibril interfacer 1 [Homo sapiens]
          Length = 1016

 Score = 30.8 bits (68), Expect = 8.6
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 521 EPSAQENPFTAPSAKKEDTLEAFSEFL-LSACDSLCIPMVMRHLEQTTHP 569
           EP   EN   A S     TL  FS  L L A D++C+ +VM  L  +  P
Sbjct: 949 EPEGLENKPVAESQPSPGTLGVFSLILPLQAGDTVCVDLVMGQLAHSEEP 998


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.135    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,428,988
Number of Sequences: 37866
Number of extensions: 1920347
Number of successful extensions: 5139
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 5129
Number of HSP's gapped (non-prelim): 20
length of query: 1274
length of database: 18,247,518
effective HSP length: 114
effective length of query: 1160
effective length of database: 13,930,794
effective search space: 16159721040
effective search space used: 16159721040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 68 (30.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.