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Search of human proteins with 89242152
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|89242152 small nuclear RNA activating complex, polypeptide
3, 50kDa [Homo sapiens]
(411 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|89242152 small nuclear RNA activating complex, polypeptide 3,... 868 0.0
gi|239752683 PREDICTED: hypothetical protein [Homo sapiens] 33 0.61
gi|239747220 PREDICTED: hypothetical protein XP_002346936 [Homo ... 33 0.61
gi|239741028 PREDICTED: hypothetical protein XP_002342067 [Homo ... 33 0.61
gi|205830432 D4, zinc and double PHD fingers family 1 isoform b ... 32 0.80
gi|58197552 essential meiotic endonuclease 1 homolog 2 [Homo sap... 32 1.4
gi|150378549 tangerin [Homo sapiens] 32 1.4
gi|239753867 PREDICTED: hypothetical protein [Homo sapiens] 30 3.0
gi|239748428 PREDICTED: hypothetical protein XP_002346657 [Homo ... 30 3.0
gi|239742361 PREDICTED: hypothetical protein XP_002342502 [Homo ... 30 3.0
gi|194328736 PHD finger protein 10 isoform b [Homo sapiens] 30 5.2
gi|194328734 PHD finger protein 10 isoform a [Homo sapiens] 30 5.2
gi|33598912 activin A receptor, type IB isoform c precursor [Hom... 29 6.8
gi|33598910 activin A receptor, type IB isoform b precursor [Hom... 29 6.8
gi|4757720 activin A receptor, type IB isoform a precursor [Homo... 29 6.8
>gi|89242152 small nuclear RNA activating complex, polypeptide 3,
50kDa [Homo sapiens]
Length = 411
Score = 868 bits (2243), Expect = 0.0
Identities = 411/411 (100%), Positives = 411/411 (100%)
Query: 1 MAEGSRGGPTCSGVGGRQDPVSGSGGCNFPEYELPELNTRAFHVGAFGELWRGRLRGAGD 60
MAEGSRGGPTCSGVGGRQDPVSGSGGCNFPEYELPELNTRAFHVGAFGELWRGRLRGAGD
Sbjct: 1 MAEGSRGGPTCSGVGGRQDPVSGSGGCNFPEYELPELNTRAFHVGAFGELWRGRLRGAGD 60
Query: 61 LSLREPPASALPGSQAADSDREDAAVARDLDCSLEAAAELRAVCGLDKLKCLEDGEDPEV 120
LSLREPPASALPGSQAADSDREDAAVARDLDCSLEAAAELRAVCGLDKLKCLEDGEDPEV
Sbjct: 61 LSLREPPASALPGSQAADSDREDAAVARDLDCSLEAAAELRAVCGLDKLKCLEDGEDPEV 120
Query: 121 IPENTDLVTLGVRKRFLEHREETITIDRACRQETFVYEMESHAIGKKPENSADMIEEGEL 180
IPENTDLVTLGVRKRFLEHREETITIDRACRQETFVYEMESHAIGKKPENSADMIEEGEL
Sbjct: 121 IPENTDLVTLGVRKRFLEHREETITIDRACRQETFVYEMESHAIGKKPENSADMIEEGEL 180
Query: 181 ILSVNILYPVIFHKHKEHKPYQTMLVLGSQKLTQLRDSIRCVSDLQIGGEFSNTPDQAPE 240
ILSVNILYPVIFHKHKEHKPYQTMLVLGSQKLTQLRDSIRCVSDLQIGGEFSNTPDQAPE
Sbjct: 181 ILSVNILYPVIFHKHKEHKPYQTMLVLGSQKLTQLRDSIRCVSDLQIGGEFSNTPDQAPE 240
Query: 241 HISKDLYKSAFFYFEGTFYNDKRYPECRDLSRTIIEWSESHDRGYGKFQTARMEDFTFND 300
HISKDLYKSAFFYFEGTFYNDKRYPECRDLSRTIIEWSESHDRGYGKFQTARMEDFTFND
Sbjct: 241 HISKDLYKSAFFYFEGTFYNDKRYPECRDLSRTIIEWSESHDRGYGKFQTARMEDFTFND 300
Query: 301 LCIKLGFPYLYCHQGDCEHVIVITDIRLVHHDDCLDRTLYPLLIKKHWLWTRKCFVCKMY 360
LCIKLGFPYLYCHQGDCEHVIVITDIRLVHHDDCLDRTLYPLLIKKHWLWTRKCFVCKMY
Sbjct: 301 LCIKLGFPYLYCHQGDCEHVIVITDIRLVHHDDCLDRTLYPLLIKKHWLWTRKCFVCKMY 360
Query: 361 TARWVTNNDSFAPEDPCFFCDVCFRMLHYDSEGNKLGEFLAYPYVDPGTFN 411
TARWVTNNDSFAPEDPCFFCDVCFRMLHYDSEGNKLGEFLAYPYVDPGTFN
Sbjct: 361 TARWVTNNDSFAPEDPCFFCDVCFRMLHYDSEGNKLGEFLAYPYVDPGTFN 411
>gi|239752683 PREDICTED: hypothetical protein [Homo sapiens]
Length = 144
Score = 32.7 bits (73), Expect = 0.61
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 4 GSRGGPTCSGVGGRQDPVSGSGG 26
GSRG P+C VGG+++ V G GG
Sbjct: 49 GSRGDPSCCAVGGQKEWVEGPGG 71
>gi|239747220 PREDICTED: hypothetical protein XP_002346936 [Homo
sapiens]
Length = 144
Score = 32.7 bits (73), Expect = 0.61
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 4 GSRGGPTCSGVGGRQDPVSGSGG 26
GSRG P+C VGG+++ V G GG
Sbjct: 49 GSRGDPSCCAVGGQKEWVEGPGG 71
>gi|239741028 PREDICTED: hypothetical protein XP_002342067 [Homo
sapiens]
Length = 144
Score = 32.7 bits (73), Expect = 0.61
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 4 GSRGGPTCSGVGGRQDPVSGSGG 26
GSRG P+C VGG+++ V G GG
Sbjct: 49 GSRGDPSCCAVGGQKEWVEGPGG 71
>gi|205830432 D4, zinc and double PHD fingers family 1 isoform b
[Homo sapiens]
Length = 380
Score = 32.3 bits (72), Expect = 0.80
Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 7/76 (9%)
Query: 318 EHVIVITDIRLVHHDDCLDRTLYPLLIKKHWLWTRKCFVCKMYTARWVTNNDS-----FA 372
E +I D H CL T+ + + W +C CK + + ND
Sbjct: 271 EDLISCADCGRSGHPSCLQFTVNMTAAVRTYRW--QCIECKSCSLCGTSENDGASWAGLT 328
Query: 373 PEDPCFFCDVCFRMLH 388
P+D FCD C R H
Sbjct: 329 PQDQLLFCDDCDRGYH 344
>gi|58197552 essential meiotic endonuclease 1 homolog 2 [Homo
sapiens]
Length = 444
Score = 31.6 bits (70), Expect = 1.4
Identities = 24/56 (42%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 45 GAFGELWRGRLRGAGDLSLREPPASALPGSQAADS-DREDAAVARDLDCSLEAAAE 99
G G +GR RG G R PP + S A DS E AA ARD AAAE
Sbjct: 7 GRAGVSCQGRGRGRGGSGQRRPPTWEISDSDAEDSAGSEAAARARDPAGERRAAAE 62
>gi|150378549 tangerin [Homo sapiens]
Length = 1523
Score = 31.6 bits (70), Expect = 1.4
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 13/117 (11%)
Query: 64 REPPASALPGSQAADSDREDAAVARDLDCSLEAAAELRAVCGLDKLKCLEDGEDPEVIPE 123
++PP + P + S E+A + R D S AEL+A L++ + DG EV +
Sbjct: 1331 QQPPGGSSPSEEPPPSPGEEAGLQRFQDTSQYVCAELQA---LEQEQRQIDGRAAEVEMQ 1387
Query: 124 NTDLVTLGVRKRFLEHREETITIDRACRQETFVYEMESHAIGKKPENSADMIEEGEL 180
L+ G K +EE + QE F + +A+ ++ + ++EE +L
Sbjct: 1388 LRSLMESGANKL----QEEVLI------QEWFTLVNKKNALIRRQDQLQLLMEEQDL 1434
>gi|239753867 PREDICTED: hypothetical protein [Homo sapiens]
Length = 215
Score = 30.4 bits (67), Expect = 3.0
Identities = 27/88 (30%), Positives = 34/88 (38%), Gaps = 15/88 (17%)
Query: 1 MAEGSRGGPTCSGVGGRQDPVSGSGGCNFPEYELPELNTRAFHVGAFGELW--------R 52
M + G C G+GGR G + PE+ LP R A G W
Sbjct: 1 MRKSEWGWRGCGGLGGRTWATRPLPGPHSPEFGLPGWRVRRGRREAQGARWPGGGAALLA 60
Query: 53 GRLR-------GAGDLSLREPPASALPG 73
GRLR GAG ++ P A+A G
Sbjct: 61 GRLRPRRRWAPGAGPVAACRPRAAAAGG 88
>gi|239748428 PREDICTED: hypothetical protein XP_002346657 [Homo
sapiens]
Length = 215
Score = 30.4 bits (67), Expect = 3.0
Identities = 27/88 (30%), Positives = 34/88 (38%), Gaps = 15/88 (17%)
Query: 1 MAEGSRGGPTCSGVGGRQDPVSGSGGCNFPEYELPELNTRAFHVGAFGELW--------R 52
M + G C G+GGR G + PE+ LP R A G W
Sbjct: 1 MRKSEWGWRGCGGLGGRTWATRPLPGPHSPEFGLPGWRVRRGRREAQGARWPGGGAALLA 60
Query: 53 GRLR-------GAGDLSLREPPASALPG 73
GRLR GAG ++ P A+A G
Sbjct: 61 GRLRPRRRWAPGAGPVAACRPRAAAAGG 88
>gi|239742361 PREDICTED: hypothetical protein XP_002342502 [Homo
sapiens]
Length = 215
Score = 30.4 bits (67), Expect = 3.0
Identities = 27/88 (30%), Positives = 34/88 (38%), Gaps = 15/88 (17%)
Query: 1 MAEGSRGGPTCSGVGGRQDPVSGSGGCNFPEYELPELNTRAFHVGAFGELW--------R 52
M + G C G+GGR G + PE+ LP R A G W
Sbjct: 1 MRKSEWGWRGCGGLGGRTWATRPLPGPHSPEFGLPGWRVRRGRREAQGARWPGGGAALLA 60
Query: 53 GRLR-------GAGDLSLREPPASALPG 73
GRLR GAG ++ P A+A G
Sbjct: 61 GRLRPRRRWAPGAGPVAACRPRAAAAGG 88
>gi|194328736 PHD finger protein 10 isoform b [Homo sapiens]
Length = 496
Score = 29.6 bits (65), Expect = 5.2
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 7/75 (9%)
Query: 314 QGDCEHVIVITDIRLVHHDDCLDRTLYPLLIKKHWLWTRKCFVCKMYTARWVTNNDSFAP 373
+G E +I + H CLD T+ + + K + W +C CK ++
Sbjct: 390 KGKAESLIHCSQCENSGHPSCLDMTMELVSMIKTYPW--QCMECKTCIICGQPHH----- 442
Query: 374 EDPCFFCDVCFRMLH 388
E+ FCD+C R H
Sbjct: 443 EEEMMFCDMCDRGYH 457
>gi|194328734 PHD finger protein 10 isoform a [Homo sapiens]
Length = 498
Score = 29.6 bits (65), Expect = 5.2
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 7/75 (9%)
Query: 314 QGDCEHVIVITDIRLVHHDDCLDRTLYPLLIKKHWLWTRKCFVCKMYTARWVTNNDSFAP 373
+G E +I + H CLD T+ + + K + W +C CK ++
Sbjct: 392 KGKAESLIHCSQCENSGHPSCLDMTMELVSMIKTYPW--QCMECKTCIICGQPHH----- 444
Query: 374 EDPCFFCDVCFRMLH 388
E+ FCD+C R H
Sbjct: 445 EEEMMFCDMCDRGYH 459
>gi|33598912 activin A receptor, type IB isoform c precursor [Homo
sapiens]
Length = 487
Score = 29.3 bits (64), Expect = 6.8
Identities = 12/20 (60%), Positives = 17/20 (85%), Gaps = 1/20 (5%)
Query: 45 GAFGELWRGRLRGAGDLSLR 64
G FGE+WRGR RG GD++++
Sbjct: 216 GRFGEVWRGRWRG-GDVAVK 234
>gi|33598910 activin A receptor, type IB isoform b precursor [Homo
sapiens]
Length = 476
Score = 29.3 bits (64), Expect = 6.8
Identities = 12/20 (60%), Positives = 17/20 (85%), Gaps = 1/20 (5%)
Query: 45 GAFGELWRGRLRGAGDLSLR 64
G FGE+WRGR RG GD++++
Sbjct: 216 GRFGEVWRGRWRG-GDVAVK 234
>gi|4757720 activin A receptor, type IB isoform a precursor [Homo
sapiens]
Length = 505
Score = 29.3 bits (64), Expect = 6.8
Identities = 12/20 (60%), Positives = 17/20 (85%), Gaps = 1/20 (5%)
Query: 45 GAFGELWRGRLRGAGDLSLR 64
G FGE+WRGR RG GD++++
Sbjct: 216 GRFGEVWRGRWRG-GDVAVK 234
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.140 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,818,225
Number of Sequences: 37866
Number of extensions: 830081
Number of successful extensions: 1976
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1970
Number of HSP's gapped (non-prelim): 17
length of query: 411
length of database: 18,247,518
effective HSP length: 105
effective length of query: 306
effective length of database: 14,271,588
effective search space: 4367105928
effective search space used: 4367105928
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.