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Search of human proteins with 8923598
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|8923598 NOP17 [Homo sapiens]
(290 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|8923598 NOP17 [Homo sapiens] 582 e-166
gi|20270333 PIH1 domain containing 2 isoform 1 [Homo sapiens] 51 1e-06
gi|145580586 kintoun isoform 2 [Homo sapiens] 50 2e-06
gi|145580588 kintoun isoform 1 [Homo sapiens] 50 2e-06
gi|130499472 PIH1 domain containing 2 isoform 2 [Homo sapiens] 47 2e-05
gi|224465184 nuclear factor I/A isoform 4 [Homo sapiens] 29 4.2
gi|224465182 nuclear factor I/A isoform 3 [Homo sapiens] 29 4.2
gi|30840980 nuclear factor I/A isoform 2 [Homo sapiens] 29 4.2
gi|197927284 nuclear factor I/A isoform 1 [Homo sapiens] 29 4.2
gi|20070103 TEA domain family member 2 [Homo sapiens] 29 5.5
gi|109134330 PHD finger protein 20-like 1 isoform 2 [Homo sapiens] 28 7.2
gi|111120331 PHD finger protein 20-like 1 isoform 1 [Homo sapiens] 28 7.2
gi|23097308 spectrin repeat containing, nuclear envelope 1 isofo... 28 9.4
gi|154277116 spectrin repeat containing, nuclear envelope 1 isof... 28 9.4
>gi|8923598 NOP17 [Homo sapiens]
Length = 290
Score = 582 bits (1501), Expect = e-166
Identities = 290/290 (100%), Positives = 290/290 (100%)
Query: 1 MANPKLLGMGLSEAEAIGADSARFEELLLQASKELQQAQTTRPESTQIQPQPGFCIKTNS 60
MANPKLLGMGLSEAEAIGADSARFEELLLQASKELQQAQTTRPESTQIQPQPGFCIKTNS
Sbjct: 1 MANPKLLGMGLSEAEAIGADSARFEELLLQASKELQQAQTTRPESTQIQPQPGFCIKTNS 60
Query: 61 SEGKVFINICHSPSIPPPADVTEEELLQMLEEDQAGFRIPMSLGEPHAELDAKGQGCTAY 120
SEGKVFINICHSPSIPPPADVTEEELLQMLEEDQAGFRIPMSLGEPHAELDAKGQGCTAY
Sbjct: 61 SEGKVFINICHSPSIPPPADVTEEELLQMLEEDQAGFRIPMSLGEPHAELDAKGQGCTAY 120
Query: 121 DVAVNSDFYRRMQNSDFLRELVITIAREGLEDKYNLQLNPEWRMMKNRPFMGSISQQNIR 180
DVAVNSDFYRRMQNSDFLRELVITIAREGLEDKYNLQLNPEWRMMKNRPFMGSISQQNIR
Sbjct: 121 DVAVNSDFYRRMQNSDFLRELVITIAREGLEDKYNLQLNPEWRMMKNRPFMGSISQQNIR 180
Query: 181 SEQRPRIQELGDLYTPAPGRAESGPEKPHLNLWLEAPDLLLAEVDLPKLDGALGLSLEIG 240
SEQRPRIQELGDLYTPAPGRAESGPEKPHLNLWLEAPDLLLAEVDLPKLDGALGLSLEIG
Sbjct: 181 SEQRPRIQELGDLYTPAPGRAESGPEKPHLNLWLEAPDLLLAEVDLPKLDGALGLSLEIG 240
Query: 241 ENRLVMGGPQQLYHLDAYIPLQINSHESKAAFHRKRKQLMVAMPLLPVPS 290
ENRLVMGGPQQLYHLDAYIPLQINSHESKAAFHRKRKQLMVAMPLLPVPS
Sbjct: 241 ENRLVMGGPQQLYHLDAYIPLQINSHESKAAFHRKRKQLMVAMPLLPVPS 290
>gi|20270333 PIH1 domain containing 2 isoform 1 [Homo sapiens]
Length = 315
Score = 51.2 bits (121), Expect = 1e-06
Identities = 65/316 (20%), Positives = 122/316 (38%), Gaps = 73/316 (23%)
Query: 19 ADSARFEELLLQASKELQQAQTTRPESTQIQPQPGFCIKTNSSEGK---VFINICHSPSI 75
+D +E+ + Q KE +Q P+P C++T + K +FIN+C I
Sbjct: 25 SDPEGYEKFIQQQLKEGKQLCAA--------PEPQLCLQTRILKPKEKILFINLCQWTRI 76
Query: 76 PPPADVTEEELLQMLEEDQAGFRIPMSLGEPHAELDAKGQGCTAYDVAVNSDFYRRMQNS 135
P P T +P+++G+P + T DVA N D +
Sbjct: 77 PAPQSTTHP--------------VPLTVGKPEDTTEIS-DAYTVIDVAYNPDVLHAAEKD 121
Query: 136 DFLRELVITIAREGLEDKYNLQLNPEWRMMKNRPFMGSIS--QQNIRS---------EQR 184
+ +I +A + +E+K+ L+ + + K R GSI +QN+ E+
Sbjct: 122 QVKKNQLIQMAMKCIEEKFQFTLSHSYHITKFR-IKGSIQRMKQNLMGIQTDSIDLREKM 180
Query: 185 PRIQELGDLYTPAPGRAESGPE-----------------------------KPHLNLWL- 214
R LG + + + P+ P L +
Sbjct: 181 RRELTLGQIRSSTMSNPDHFPQLLLPKDQVSGKAVCLIEEISSTEIQVEMKMPAYELKIV 240
Query: 215 ----EAPDLLLAEVDLPKLDGALGLSLEIGENRLVMGGPQQLYHLDAYIPLQINSHESKA 270
E P + +V+LP ++ L + E+ L++ ++ Y L +P I++ + A
Sbjct: 241 HDHSEKPLKIELKVELPGINSVSLCDLSVSEDDLLIEVSEK-YRLHLNLPKLIDTEMTTA 299
Query: 271 AFHRKRKQLMVAMPLL 286
F +++ L++ MPL+
Sbjct: 300 KFIKEKSTLIITMPLV 315
>gi|145580586 kintoun isoform 2 [Homo sapiens]
Length = 789
Score = 50.1 bits (118), Expect = 2e-06
Identities = 63/310 (20%), Positives = 120/310 (38%), Gaps = 49/310 (15%)
Query: 25 EELLLQASKELQQAQTTRPESTQ------IQPQPGFCIKTN-SSEGKVFINICHSPSIPP 77
EEL ++ +A+ T E + + P+PG ++T+ + F+N+C + +
Sbjct: 41 EELTDPENRRRYEAEITALERERGVEVRFVHPEPGHVLRTSLDGARRCFVNVCSNALVGA 100
Query: 78 PADVTEEELLQMLEEDQAGFRIPMSLGEPHAELDAKGQGCTAYDVAVNSDFYRRMQNSDF 137
P+ + + + +P SL YDV + D + +
Sbjct: 101 PSSRPGSGGDRGAAPG-SHWSLPYSLAPGREYAGRSSSRYMVYDVVFHPDALALARRHEG 159
Query: 138 LRELVITIAREGLEDKYNLQLNPEWRMMKNRPFMGSISQQNIRSE------QRPRIQELG 191
R+++ A E +E ++ ++L+ + G+ +R+ RP + G
Sbjct: 160 FRQMLDATALEAVEKQFGVKLDRRNAKTLKAKYKGTPEAAVLRTPLPGVIPARPDGEPKG 219
Query: 192 DL--------YTPAPG-RAESGPE----------------KPHLNLW----------LEA 216
L Y APG RA S PE + H++L
Sbjct: 220 PLPDFPYPYQYPAAPGPRAPSPPEAALQPAPTEPRYSVVQRHHVDLQDYRCSRDSAPSPV 279
Query: 217 PDLLLAEVDLPKLDGALGLSLEIGENRLVMGGPQQLYHLDAYIPLQINSHESKAAFHRKR 276
P L+ ++LP L A +LE+ L + + Y L +P ++ KA F++ R
Sbjct: 280 PHELVITIELPLLRSAEQAALEVTRKLLCLDSRKPDYRLRLSLPYPVDDGRGKAQFNKAR 339
Query: 277 KQLMVAMPLL 286
+QL+V +P++
Sbjct: 340 RQLVVTLPVV 349
>gi|145580588 kintoun isoform 1 [Homo sapiens]
Length = 837
Score = 50.1 bits (118), Expect = 2e-06
Identities = 63/310 (20%), Positives = 120/310 (38%), Gaps = 49/310 (15%)
Query: 25 EELLLQASKELQQAQTTRPESTQ------IQPQPGFCIKTN-SSEGKVFINICHSPSIPP 77
EEL ++ +A+ T E + + P+PG ++T+ + F+N+C + +
Sbjct: 41 EELTDPENRRRYEAEITALERERGVEVRFVHPEPGHVLRTSLDGARRCFVNVCSNALVGA 100
Query: 78 PADVTEEELLQMLEEDQAGFRIPMSLGEPHAELDAKGQGCTAYDVAVNSDFYRRMQNSDF 137
P+ + + + +P SL YDV + D + +
Sbjct: 101 PSSRPGSGGDRGAAPG-SHWSLPYSLAPGREYAGRSSSRYMVYDVVFHPDALALARRHEG 159
Query: 138 LRELVITIAREGLEDKYNLQLNPEWRMMKNRPFMGSISQQNIRSE------QRPRIQELG 191
R+++ A E +E ++ ++L+ + G+ +R+ RP + G
Sbjct: 160 FRQMLDATALEAVEKQFGVKLDRRNAKTLKAKYKGTPEAAVLRTPLPGVIPARPDGEPKG 219
Query: 192 DL--------YTPAPG-RAESGPE----------------KPHLNLW----------LEA 216
L Y APG RA S PE + H++L
Sbjct: 220 PLPDFPYPYQYPAAPGPRAPSPPEAALQPAPTEPRYSVVQRHHVDLQDYRCSRDSAPSPV 279
Query: 217 PDLLLAEVDLPKLDGALGLSLEIGENRLVMGGPQQLYHLDAYIPLQINSHESKAAFHRKR 276
P L+ ++LP L A +LE+ L + + Y L +P ++ KA F++ R
Sbjct: 280 PHELVITIELPLLRSAEQAALEVTRKLLCLDSRKPDYRLRLSLPYPVDDGRGKAQFNKAR 339
Query: 277 KQLMVAMPLL 286
+QL+V +P++
Sbjct: 340 RQLVVTLPVV 349
>gi|130499472 PIH1 domain containing 2 isoform 2 [Homo sapiens]
Length = 288
Score = 47.0 bits (110), Expect = 2e-05
Identities = 42/174 (24%), Positives = 72/174 (41%), Gaps = 29/174 (16%)
Query: 19 ADSARFEELLLQASKELQQAQTTRPESTQIQPQPGFCIKTNSSEGK---VFINICHSPSI 75
+D +E+ + Q KE +Q P+P C++T + K +FIN+C I
Sbjct: 25 SDPEGYEKFIQQQLKEGKQLCAA--------PEPQLCLQTRILKPKEKILFINLCQWTRI 76
Query: 76 PPPADVTEEELLQMLEEDQAGFRIPMSLGEPHAELDAKGQGCTAYDVAVNSDFYRRMQNS 135
P P T +P+++G+P + T DVA N D +
Sbjct: 77 PAPQSTTHP--------------VPLTVGKPEDTTEIS-DAYTVIDVAYNPDVLHAAEKD 121
Query: 136 DFLRELVITIAREGLEDKYNLQLNPEWRMMKNRPFMGSIS--QQNIRSEQRPRI 187
+ +I +A + +E+K+ L+ + + K R GSI +QN+ Q I
Sbjct: 122 QVKKNQLIQMAMKCIEEKFQFTLSHSYHITKFR-IKGSIQRMKQNLMGIQTDSI 174
>gi|224465184 nuclear factor I/A isoform 4 [Homo sapiens]
Length = 554
Score = 29.3 bits (64), Expect = 4.2
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 39 QTTRPESTQIQPQPGFCIKTNSSEGKVFINICHSPSIPPP 78
Q P++ Q Q GF SS+GKV +P +PPP
Sbjct: 446 QLVCPDAGQQAGQVGFLNPNGSSQGKVHNPFLPTPMLPPP 485
>gi|224465182 nuclear factor I/A isoform 3 [Homo sapiens]
Length = 501
Score = 29.3 bits (64), Expect = 4.2
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 39 QTTRPESTQIQPQPGFCIKTNSSEGKVFINICHSPSIPPP 78
Q P++ Q Q GF SS+GKV +P +PPP
Sbjct: 393 QLVCPDAGQQAGQVGFLNPNGSSQGKVHNPFLPTPMLPPP 432
>gi|30840980 nuclear factor I/A isoform 2 [Homo sapiens]
Length = 498
Score = 29.3 bits (64), Expect = 4.2
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 39 QTTRPESTQIQPQPGFCIKTNSSEGKVFINICHSPSIPPP 78
Q P++ Q Q GF SS+GKV +P +PPP
Sbjct: 401 QLVCPDAGQQAGQVGFLNPNGSSQGKVHNPFLPTPMLPPP 440
>gi|197927284 nuclear factor I/A isoform 1 [Homo sapiens]
Length = 509
Score = 29.3 bits (64), Expect = 4.2
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 39 QTTRPESTQIQPQPGFCIKTNSSEGKVFINICHSPSIPPP 78
Q P++ Q Q GF SS+GKV +P +PPP
Sbjct: 401 QLVCPDAGQQAGQVGFLNPNGSSQGKVHNPFLPTPMLPPP 440
>gi|20070103 TEA domain family member 2 [Homo sapiens]
Length = 447
Score = 28.9 bits (63), Expect = 5.5
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 59 NSSEGKVFINI---CHSPSIPPPADVTEEELLQMLEEDQAGFRIPMSLGEPHA 108
+S + +F++I C SP PP V ++ E + G R G PHA
Sbjct: 244 DSYQRHLFVHISQHCPSPGAPPLESVDVRQIYDKFPEKKGGLRELYDRGPPHA 296
>gi|109134330 PHD finger protein 20-like 1 isoform 2 [Homo sapiens]
Length = 573
Score = 28.5 bits (62), Expect = 7.2
Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 15/95 (15%)
Query: 10 GLSEAEAIGADSARFEELLLQASKELQQAQTTRPE---------STQIQPQPGFCIKTNS 60
GL ++A+G D A +E + + L+QA + +P+ S+ Q + +
Sbjct: 283 GLLASKAVGVDGAEKKEDYNETAPMLEQAISPKPQSQKKNEADISSSANTQKPALLSSTL 342
Query: 61 SEGKVFINICHSPS------IPPPADVTEEELLQM 89
S GK C S I PP EL+Q+
Sbjct: 343 SSGKARSKKCKHESGDSSGCIKPPKSPLSPELIQV 377
>gi|111120331 PHD finger protein 20-like 1 isoform 1 [Homo sapiens]
Length = 1017
Score = 28.5 bits (62), Expect = 7.2
Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 15/95 (15%)
Query: 10 GLSEAEAIGADSARFEELLLQASKELQQAQTTRPE---------STQIQPQPGFCIKTNS 60
GL ++A+G D A +E + + L+QA + +P+ S+ Q + +
Sbjct: 283 GLLASKAVGVDGAEKKEDYNETAPMLEQAISPKPQSQKKNEADISSSANTQKPALLSSTL 342
Query: 61 SEGKVFINICHSPS------IPPPADVTEEELLQM 89
S GK C S I PP EL+Q+
Sbjct: 343 SSGKARSKKCKHESGDSSGCIKPPKSPLSPELIQV 377
>gi|23097308 spectrin repeat containing, nuclear envelope 1 isoform
2 [Homo sapiens]
Length = 8749
Score = 28.1 bits (61), Expect = 9.4
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 122 VAVNSDFYRRMQNSDFLRELVITIAREGLEDKYNLQLNPEWRMMKNRPFMGSISQQ 177
V NS ++ + S E V+ IA+EGLE+K +PE + ++ F + Q+
Sbjct: 929 VETNSRLMKKFEESRAELEKVLRIAQEGLEEKG----DPEELLRRHTEFFSQLDQR 980
>gi|154277116 spectrin repeat containing, nuclear envelope 1 isoform
1 [Homo sapiens]
Length = 8797
Score = 28.1 bits (61), Expect = 9.4
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 122 VAVNSDFYRRMQNSDFLRELVITIAREGLEDKYNLQLNPEWRMMKNRPFMGSISQQ 177
V NS ++ + S E V+ IA+EGLE+K +PE + ++ F + Q+
Sbjct: 922 VETNSRLMKKFEESRAELEKVLRIAQEGLEEKG----DPEELLRRHTEFFSQLDQR 973
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.134 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,112,149
Number of Sequences: 37866
Number of extensions: 587964
Number of successful extensions: 1599
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1583
Number of HSP's gapped (non-prelim): 21
length of query: 290
length of database: 18,247,518
effective HSP length: 101
effective length of query: 189
effective length of database: 14,423,052
effective search space: 2725956828
effective search space used: 2725956828
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.